mRNA_Ecto-sp13_S_contig9393.20991.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9393.20991.1
Unique NamemRNA_Ecto-sp13_S_contig9393.20991.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9393.20991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9393contigEcto-sp13_S_contig9393:2829..3499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size346
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004530.1
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464207.1156092-UTR-Ecto-sp13_S_contig9393:2828..29401681464207.1156092-UTR-Ecto-sp13_S_contig9393:2828..2940Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9393 2829..2940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464207.1271214-CDS-Ecto-sp13_S_contig9393:2940..30331681464207.1271214-CDS-Ecto-sp13_S_contig9393:2940..3033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9393 2941..3033 +
1681464207.1382718-CDS-Ecto-sp13_S_contig9393:3358..34991681464207.1382718-CDS-Ecto-sp13_S_contig9393:3358..3499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9393 3359..3499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9393.20991.1prot_Ecto-sp13_S_contig9393.20991.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9393 2941..3499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9393.20991.1

>prot_Ecto-sp13_S_contig9393.20991.1 ID=prot_Ecto-sp13_S_contig9393.20991.1|Name=mRNA_Ecto-sp13_S_contig9393.20991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MRFQRRMRLTGARLPGSMAPDESAWIRSVGEARGLQATESAFLLSAHPCW
PGVFSSAVLGKAWVESFSGELCTTVLL*
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mRNA from alignment at Ecto-sp13_S_contig9393:2829..3499+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9393.20991.1 ID=mRNA_Ecto-sp13_S_contig9393.20991.1|Name=mRNA_Ecto-sp13_S_contig9393.20991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=671bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9393:2829..3499+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCAGAGGAAGAGTCTCTACTGCTGTCGCTGTCAACAGGCGTGTTAGAG
GTGGACGAGGCCCCCCGCTGTAACGAGGACTATCACCCGCGTTACGGCGG
CGTTGGCGCCTGATGCGATTCCAACGTCGCATGCGTCTTACCGGAGCACG
CCTTCCCGGCTCCATGGCTCCTGACGAGTCCGCTTGGATACGCTCCGTTG
GCGAGGTTTGTTGTTGTTTCTGTCTTTTGTTTCCCCCCCCGCGTCATATG
CATGATTGCCGCGGTTGCGTTTTTCGGGTGATGTGGGCGTTTTCCTTTGT
CTTTGAGCGTTTTCCTTTGTCTTTGAACGTGAAATGAGGACGGCATGTTA
CATCACCAGGTGTCAAATTGCATAGTGTTTTTCTAGCTTCGTTTCATGCC
GCATGGTTGCTTGAGTACAACACCCCCGCCGACTGCTACGCCCGTGGATG
TACTCACCTCCAGCAATGCCCCGCCTACCTTTCCTTCACCCATGGTTTGC
TATCGTCTTGCGGCCACCGGTGTTTTTCAGGCGAGGGGTCTACAAGCGAC
CGAGAGCGCGTTCTTGCTTTCGGCGCACCCCTGCTGGCCCGGAGTATTTT
CCTCGGCGGTGTTGGGCAAAGCATGGGTGGAGAGCTTCTCTGGTGAGCTA
TGTACTACCGTACTGCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9393:2829..3499+

>mRNA_Ecto-sp13_S_contig9393.20991.1 ID=mRNA_Ecto-sp13_S_contig9393.20991.1|Name=mRNA_Ecto-sp13_S_contig9393.20991.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9393:2829..3499+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATTCCAACGTCGCATGCGTCTTACCGGAGCACGCCTTCCCGGCTC
CATGGCTCCTGACGAGTCCGCTTGGATACGCTCCGTTGGCGAGGCGAGGG
GTCTACAAGCGACCGAGAGCGCGTTCTTGCTTTCGGCGCACCCCTGCTGG
CCCGGAGTATTTTCCTCGGCGGTGTTGGGCAAAGCATGGGTGGAGAGCTT
CTCTGGTGAGCTATGTACTACCGTACTGCTGTAG
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