mRNA_Ecto-sp13_S_contig9391.20987.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9391.20987.1
Unique NamemRNA_Ecto-sp13_S_contig9391.20987.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9391.20987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9391contigEcto-sp13_S_contig9391:3103..3850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size748
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464206.9348984-UTR-Ecto-sp13_S_contig9391:3102..32541681464206.9348984-UTR-Ecto-sp13_S_contig9391:3102..3254Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9391 3103..3254 +
1681464206.9684894-UTR-Ecto-sp13_S_contig9391:3635..38501681464206.9684894-UTR-Ecto-sp13_S_contig9391:3635..3850Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9391 3636..3850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464206.9488156-CDS-Ecto-sp13_S_contig9391:3254..36351681464206.9488156-CDS-Ecto-sp13_S_contig9391:3254..3635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9391 3255..3635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9391.20987.1prot_Ecto-sp13_S_contig9391.20987.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9391 3255..3635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9391.20987.1

>prot_Ecto-sp13_S_contig9391.20987.1 ID=prot_Ecto-sp13_S_contig9391.20987.1|Name=mRNA_Ecto-sp13_S_contig9391.20987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MSFSKQLFPRNRAHSATENSLRTQNENALVTTQMKPPENAIQATTTKQAT
AHLTATVPKRSCEDPTPPGKRTNKRPTTPLKSRGGGCPPSAKTPPSRTGP
QQPICFSLQYPMYFYVFIHKTIVQKK*
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mRNA from alignment at Ecto-sp13_S_contig9391:3103..3850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9391.20987.1 ID=mRNA_Ecto-sp13_S_contig9391.20987.1|Name=mRNA_Ecto-sp13_S_contig9391.20987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=748bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9391:3103..3850+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGCCCCTCCTCGTGCCCATTCCGAAACTGGCACACGTACATGCCACGT
ACCCCGGCACATCTTTGCCCGCGTATCACACCTAGTGGTACTGGATGAAT
TTTGCTGTCCATAGACGCCGCGAAGCGTGACACACATGAGAAATACATAG
GAATGAGTTTCTCCAAGCAACTCTTCCCCCGCAATCGAGCGCATTCCGCT
ACCGAAAACAGTCTACGCACCCAAAATGAAAATGCCCTCGTTACAACACA
GATGAAACCACCTGAAAATGCAATACAAGCAACAACAACGAAACAGGCGA
CAGCCCATCTCACGGCAACCGTGCCAAAGAGATCATGTGAGGACCCAACG
CCGCCAGGCAAACGCACAAACAAGCGTCCAACAACGCCCCTCAAGAGCAG
AGGTGGCGGTTGCCCCCCCTCCGCAAAAACGCCTCCATCACGCACAGGAC
CTCAGCAACCTATCTGTTTCTCTCTACAGTACCCCATGTATTTTTACGTG
TTCATCCATAAAACAATCGTACAGAAGAAGTAGCAGGAGGGGACTATATC
GCCTTTGTTTACACGCGTGGCAAAGTGCGTGAAAAGAACATGTTTCAGGT
GCTGTACGCTGTTTATTCAAGACTATAGTGCTGCAAAAGGCCATCCTCAC
TATCCTAACCGAAGCCCTACTCACAAAATTCTAACCCTCCAAGCCCCCTG
GACTATGCCATGCCTGAGTCTCACCCGACCCCCTTCGTGGCCCCTTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9391:3103..3850+

>mRNA_Ecto-sp13_S_contig9391.20987.1 ID=mRNA_Ecto-sp13_S_contig9391.20987.1|Name=mRNA_Ecto-sp13_S_contig9391.20987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9391:3103..3850+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTTTCTCCAAGCAACTCTTCCCCCGCAATCGAGCGCATTCCGCTAC
CGAAAACAGTCTACGCACCCAAAATGAAAATGCCCTCGTTACAACACAGA
TGAAACCACCTGAAAATGCAATACAAGCAACAACAACGAAACAGGCGACA
GCCCATCTCACGGCAACCGTGCCAAAGAGATCATGTGAGGACCCAACGCC
GCCAGGCAAACGCACAAACAAGCGTCCAACAACGCCCCTCAAGAGCAGAG
GTGGCGGTTGCCCCCCCTCCGCAAAAACGCCTCCATCACGCACAGGACCT
CAGCAACCTATCTGTTTCTCTCTACAGTACCCCATGTATTTTTACGTGTT
CATCCATAAAACAATCGTACAGAAGAAGTAG
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