mRNA_Ecto-sp13_S_contig93879.20982.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig93879.20982.1
Unique NamemRNA_Ecto-sp13_S_contig93879.20982.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: A0A6H5KSF9_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.010e-28
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRYN 165
            L  RHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVR++
Sbjct:  181 LLSRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRFD 235          
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: D8LU44_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU44_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 5.410e-28
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRYN 165
            L  RHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVR++
Sbjct:  141 LLSRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRFD 195          
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: A0A835Z8N9_9STRA (Calpain catalytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.280e-16
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRYN 165
            L  RHV  +E+D A GD+LT+HV+  + G RV+YP TPM+KG YTNNPHTLVR++
Sbjct:  225 LLSRHVMELETDEASGDYLTLHVFDNSDGARVWYPSTPMYKGTYTNNPHTLVRFD 279          
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: D8LU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU46_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.760e-14
Identity = 37/53 (69.81%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVR 159
            L  RHVTVIESDPAEGDFLTMHVYA TQGKRVYYP+     G     P TL R
Sbjct:  119 LLTRHVTVIESDPAEGDFLTMHVYADTQGKRVYYPENQCLGGF---TPTTLTR 168          
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: A0A7S2R4L7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4L7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.240e-13
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRYN 165
            L  RHVT  E D   GDFLT+HV+   QGKRV+YP  PM KG+YTNNPH L+R++
Sbjct:  478 LLSRHVTKKEDDEHPGDFLTVHVFEN-QGKRVFYPHAPMVKGVYTNNPHNLLRFD 531          
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: A0A507DTC9_9FUNG (Calpain catalytic domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DTC9_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-12
Identity = 27/55 (49.09%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRYN 165
            L  +HVT+ E +    D++T+HVY+GT G++VYYPDTP  +G+Y NNPH L++++
Sbjct:  497 LLTKHVTMTEENT---DYITLHVYSGTNGEKVYYPDTPFVRGVYINNPHILIKFS 548          
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: A0A433QRA9_9FUNG (Calpain catalytic domain-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QRA9_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 3.400e-11
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRYN 165
            L  +H+T+ E +    D++T+H+YAGT G+RV+YP  PM +G Y N+PH LVR+N
Sbjct:  208 LLSKHITIKEENK---DYITLHLYAGTNGERVFYPGNPMKEGTYVNSPHILVRFN 259          
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: A0A433DED8_9FUNG (Calpain catalytic domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DED8_9FUNG)

HSP 1 Score: 65.9 bits (159), Expect = 3.420e-11
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRYN 165
            L  +H+T+ E +    D++T+H+YAGT G+RV+YP  PM +G Y N+PH LVR+N
Sbjct:  608 LLSKHITIKEENK---DYITLHLYAGTNGERVFYPGNPMKEGTYVNSPHILVRFN 659          
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: A0A7R9YFX4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFX4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.620e-10
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 LFCRHVTVIES---DPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVRYN 165
            L  RHVT  E+   D +EGDFL +HVY   +G R++YP+  + +G+Y+NNPH L R++
Sbjct:  347 LLSRHVTKREAEIKDESEGDFLALHVYTKRKGARIFYPEKAVIRGLYSNNPHNLTRFD 404          
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Match: A0A4P9XVN9_9FUNG (Calpain catalytic domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XVN9_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-10
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHTLVR 159
            L  RH+T  +    + +++TMHVYAGT G R++YP  P +KG+Y NNPH L+R
Sbjct:  417 LLSRHIT--QGALQDQEYMTMHVYAGTDGGRMFYPTEPTYKGVYVNNPHVLIR 467          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93879.20982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSF9_9PHAE1.010e-2892.73Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LU44_ECTSI5.410e-2892.73Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A835Z8N9_9STRA3.280e-1660.00Calpain catalytic domain-containing protein n=1 Ta... [more]
D8LU46_ECTSI4.760e-1469.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2R4L7_9STRA1.240e-1360.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A507DTC9_9FUNG1.100e-1249.09Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A433QRA9_9FUNG3.400e-1149.09Calpain catalytic domain-containing protein (Fragm... [more]
A0A433DED8_9FUNG3.420e-1149.09Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7R9YFX4_9STRA1.620e-1046.55Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4P9XVN9_9FUNG2.230e-1049.06Calpain catalytic domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93879contigEcto-sp13_S_contig93879:109..273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score112.5
Seed ortholog evalue6.5e-23
Seed eggNOG ortholog2880.D8LU44
Model size165
KEGG koko:K08582
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
Cds size165
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464206.6130204-CDS-Ecto-sp13_S_contig93879:108..2731681464206.6130204-CDS-Ecto-sp13_S_contig93879:108..273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93879 109..273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93879.20982.1prot_Ecto-sp13_S_contig93879.20982.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig93879 109..273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig93879.20982.1

>prot_Ecto-sp13_S_contig93879.20982.1 ID=prot_Ecto-sp13_S_contig93879.20982.1|Name=mRNA_Ecto-sp13_S_contig93879.20982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
LFCRHVTVIESDPAEGDFLTMHVYAGTQGKRVYYPDTPMFKGIYTNNPHT
LVRYN
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mRNA from alignment at Ecto-sp13_S_contig93879:109..273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig93879.20982.1 ID=mRNA_Ecto-sp13_S_contig93879.20982.1|Name=mRNA_Ecto-sp13_S_contig93879.20982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93879:109..273+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTTTTGCAGACACGTGACGGTGATCGAGTCCGACCCGGCAGAAGGCGA CTTTTTGACGATGCACGTCTACGCGGGCACGCAGGGGAAGCGGGTCTACT ACCCGGACACGCCAATGTTCAAAGGGATTTACACCAACAACCCTCACACG CTCGTCAGGTATAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig93879:109..273+

>mRNA_Ecto-sp13_S_contig93879.20982.1 ID=mRNA_Ecto-sp13_S_contig93879.20982.1|Name=mRNA_Ecto-sp13_S_contig93879.20982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93879:109..273+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTTTTGCAGACACGTGACGGTGATCGAGTCCGACCCGGCAGAAGGCGA
CTTTTTGACGATGCACGTCTACGCGGGCACGCAGGGGAAGCGGGTCTACT
ACCCGGACACGCCAATGTTCAAAGGGATTTACACCAACAACCCTCACACG
CTCGTCAGGTATAAC
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