mRNA_Ecto-sp13_S_contig93737.20974.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig93737.20974.1
Unique NamemRNA_Ecto-sp13_S_contig93737.20974.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: D7G3C7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C7_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.470e-13
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:   25 QAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 123
            QAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV
Sbjct:  159 QAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 191
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: A0A7S1GNN3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNN3_CYCTE)

HSP 1 Score: 59.3 bits (142), Expect = 3.010e-9
Identity = 30/38 (78.95%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   19 FPQ---AWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 123
            FP+   AWHEFEVAHGNEETFREMLR K SVQ SFS V
Sbjct:   86 FPEYWSAWHEFEVAHGNEETFREMLRIKRSVQASFSTV 123
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: A0A7S2V324_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V324_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.540e-9
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   25 QAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 123
            +AWH+FEV HGNE+TFREMLR K SVQ++FSQV
Sbjct:   67 KAWHDFEVGHGNEDTFREMLRVKRSVQVAFSQV 99
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: A0A836CMJ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMJ5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.380e-9
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   28 AWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 123
            AWH+FEVAHGNEETFREMLR K SV MSFS V
Sbjct:   57 AWHDFEVAHGNEETFREMLRVKRSVAMSFSAV 88
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: K0SYC6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SYC6_THAOC)

HSP 1 Score: 57.4 bits (137), Expect = 1.780e-8
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   25 QAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 123
            +AWHEFEV+HGNEETFREMLR K SVQ +FS V
Sbjct:  425 KAWHEFEVSHGNEETFREMLRVKRSVQAAFSTV 457
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: B8C032_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C032_THAPS)

HSP 1 Score: 57.0 bits (136), Expect = 2.430e-8
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   28 AWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 123
            AWHEFEV+HGNEETFREMLR K SVQ +FS V
Sbjct:  677 AWHEFEVSHGNEETFREMLRVKRSVQAAFSTV 708
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: A0A314U9I1_PRUYE (Pre-mRNA-splicing factor SYF1-like n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314U9I1_PRUYE)

HSP 1 Score: 53.1 bits (126), Expect = 4.810e-8
Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   19 FPQAWHEFEVAHGNEETFREMLRTKLSVQMSFSQ 120
            F   WHEFEV HGNE+TFREMLR K SV  S+SQ
Sbjct:   37 FRNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQ 70
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: A0A7S1ZRG7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZRG7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.200e-8
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   25 QAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 123
            +AWH+FEVAHGNEETFREMLR K  VQ +FS V
Sbjct:  849 KAWHDFEVAHGNEETFREMLRVKRGVQAAFSTV 881
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: I0YX29_COCSC (Protein prenylyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX29_COCSC)

HSP 1 Score: 54.7 bits (130), Expect = 1.590e-7
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:   19 FPQAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV 123
            F +AW++FEVAHGNE+TFREMLR K SV  SFSQ+
Sbjct:  735 FWKAWNDFEVAHGNEDTFREMLRIKRSVAASFSQI 769
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BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Match: A0A7S2UKD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKD3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.590e-7
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   31 WHEFEVAHGNEETFREMLRTKLSVQMSFSQV 123
            WHEFEVAHGNEETFREMLR K  +Q +FS V
Sbjct:  349 WHEFEVAHGNEETFREMLRVKRGIQAAFSTV 379
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig93737.20974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C7_ECTSI5.470e-13100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1GNN3_CYCTE3.010e-978.95Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2V324_9STRA3.540e-975.76Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A836CMJ5_9STRA7.380e-984.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0SYC6_THAOC1.780e-878.79Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8C032_THAPS2.430e-881.25Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A314U9I1_PRUYE4.810e-870.59Pre-mRNA-splicing factor SYF1-like n=1 Tax=Prunus ... [more]
A0A7S1ZRG7_9STRA6.200e-875.76Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
I0YX29_COCSC1.590e-771.43Protein prenylyltransferase n=1 Tax=Coccomyxa sube... [more]
A0A7S2UKD3_9STRA1.590e-777.42Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig93737contigEcto-sp13_S_contig93737:12..134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score70.9
Seed ortholog evalue1.6e-10
Seed eggNOG ortholog2880.D7G3C7
Model size123
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
Exons1
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
Cds size123
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464205.8404276-CDS-Ecto-sp13_S_contig93737:11..1341681464205.8404276-CDS-Ecto-sp13_S_contig93737:11..134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig93737 12..134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig93737.20974.1prot_Ecto-sp13_S_contig93737.20974.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig93737 12..134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig93737.20974.1

>prot_Ecto-sp13_S_contig93737.20974.1 ID=prot_Ecto-sp13_S_contig93737.20974.1|Name=mRNA_Ecto-sp13_S_contig93737.20974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
MCCLFFFPQAWHEFEVAHGNEETFREMLRTKLSVQMSFSQV
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mRNA from alignment at Ecto-sp13_S_contig93737:12..134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig93737.20974.1 ID=mRNA_Ecto-sp13_S_contig93737.20974.1|Name=mRNA_Ecto-sp13_S_contig93737.20974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93737:12..134+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTGTCTTTTTTTTTTTCCTCAGGCGTGGCACGAGTTCGAGGTGGC
CCACGGCAACGAGGAGACCTTCCGGGAGATGCTGAGGACGAAGCTCTCGG
TGCAGATGTCGTTTAGCCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig93737:12..134+

>mRNA_Ecto-sp13_S_contig93737.20974.1 ID=mRNA_Ecto-sp13_S_contig93737.20974.1|Name=mRNA_Ecto-sp13_S_contig93737.20974.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig93737:12..134+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTGTCTTTTTTTTTTTCCTCAGGCGTGGCACGAGTTCGAGGTGGC
CCACGGCAACGAGGAGACCTTCCGGGAGATGCTGAGGACGAAGCTCTCGG
TGCAGATGTCGTTTAGCCAGGTG
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