mRNA_Ecto-sp13_S_contig9353.20956.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9353.20956.1
Unique NamemRNA_Ecto-sp13_S_contig9353.20956.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9353.20956.1 vs. uniprot
Match: D8LRI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRI0_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 6.700e-70
Identity = 120/144 (83.33%), Postives = 126/144 (87.50%), Query Frame = 1 
Query:    1 MVIIMSGAVWAGIVVTKCVISKVLVWTALERCMWQDENREHETNSSDEEARDDGEDVPEEYAQEVDXXXXXXQQPVDGATKRTLGTLKQGSGRELTPREDRLQSESSTGDNSLDSRSDGSGEGDDYVPNSTMMMVTDYLFHFYV 432
            MVII+SGAVWAGI+VTKCVISKVLVW ALERC+  DENREH+TNSSDEEARDDGEDVPE  AQEVD      QQPV GATKRTLGTLKQG GRE T R DRLQ ESSTGDNSLDSRSDGSGEG DYVP+STMMMVTD+LFHFYV
Sbjct:    1 MVIIVSGAVWAGIMVTKCVISKVLVWKALERCVRPDENREHKTNSSDEEARDDGEDVPE-LAQEVDDEEEEDQQPVIGATKRTLGTLKQGDGREPTSRVDRLQPESSTGDNSLDSRSDGSGEGGDYVPDSTMMMVTDFLFHFYV 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9353.20956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRI0_ECTSI6.700e-7083.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9353contigEcto-sp13_S_contig9353:4174..5376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size435
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_004590.1
Cds size435
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464204.395951-CDS-Ecto-sp13_S_contig9353:4173..42891681464204.395951-CDS-Ecto-sp13_S_contig9353:4173..4289Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9353 4174..4289 +
1681464204.4071934-CDS-Ecto-sp13_S_contig9353:4573..46461681464204.4071934-CDS-Ecto-sp13_S_contig9353:4573..4646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9353 4574..4646 +
1681464204.4176662-CDS-Ecto-sp13_S_contig9353:4852..49361681464204.4176662-CDS-Ecto-sp13_S_contig9353:4852..4936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9353 4853..4936 +
1681464204.430911-CDS-Ecto-sp13_S_contig9353:5214..53761681464204.430911-CDS-Ecto-sp13_S_contig9353:5214..5376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9353 5215..5376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9353.20956.1prot_Ecto-sp13_S_contig9353.20956.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9353 4174..5376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9353.20956.1

>prot_Ecto-sp13_S_contig9353.20956.1 ID=prot_Ecto-sp13_S_contig9353.20956.1|Name=mRNA_Ecto-sp13_S_contig9353.20956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MVIIMSGAVWAGIVVTKCVISKVLVWTALERCMWQDENREHETNSSDEEA
RDDGEDVPEEYAQEVDDDEEEDQQPVDGATKRTLGTLKQGSGRELTPRED
RLQSESSTGDNSLDSRSDGSGEGDDYVPNSTMMMVTDYLFHFYV*
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mRNA from alignment at Ecto-sp13_S_contig9353:4174..5376+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9353.20956.1 ID=mRNA_Ecto-sp13_S_contig9353.20956.1|Name=mRNA_Ecto-sp13_S_contig9353.20956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9353:4174..5376+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAATAATCATGAGCGGAGCTGTCTGGGCGGGCATCGTGGTGACCAA
GTGCGTAATCTCCAAGGTCTTGGTATGGACGGCCCTCGAACGATGCATGT
GGCAGGACGAGAACAGGTGAGACACCCCCCTTCGATTCAGCACTGCTTTA
CATCAGTACGTGTAGATTTAGTAGTGCACAATAAGTTTGGAAAAATGAAT
GATTTATCGTAATGTAGCCATCCCTGCGTTGGGAGCGAGGGTCGATGTAG
GACGAGAGAACATCTCACAACAAGCAAGCGCAATCCGCGACCTCACTACG
CTACCCGCCACGATACTGATCCTCTTGCCACTGACAACCCACCCATACGC
TGCAAATATCACATGACATACGGACATACGTGTGTCATTGAATTCCGCAG
GGAACACGAGACCAATAGTAGTGACGAAGAAGCACGCGATGATGGTGAAG
ATGTGCCAGAAGAGTATGCCCAGGTATTTAGGTAAAGCTGTGCAACCGTT
GTTTAAGGACTCAGGTCAAAGTTGGTACCCAACGTGCAGCGGCGAATCCG
AATTCATTCGCGACTCGTCGATGATTTAGGCTATTTGGTCCCTCAGCTAG
TGGTATGTGGTGGTAGTTCGTACCATGTTTGCTCATCGCTAGGGCCGCAC
CCGGTTGGTTCACGCGCCCTCCGCAACAGGAAGTCGACGACGATGAGGAA
GAGGACCAGCAGCCCGTGGATGGCGCCACGAAAAGGACTCTCGGCACACT
GAAGCAAGGTAGTGTTGCATGTGCGTATGAAAAGTATTTCTCTCCTCACC
ACACGAGTTGCAATGGTCACTAACTGCAATCAGTTCATTTCTTGTTCGTT
TACATAACAGTGTATTCTTCCATGAACAATCTGTCTATGTATTTACATGT
AGACTAGAGGTCATATTTCAGAACTAGACCTCTACACTCCGGGAGAACTC
ATGGCCAAACGTTCTGGAACATGCTGCACCTCATCGCTACCTATGCATAC
AGATGCATAAGTCCAACTGTGCACGTATTGTACCAGGTGAGGGCCGGGAG
CTGACACCGCGGGAGGACCGCTTGCAGTCCGAGTCGTCTACCGGGGACAA
CTCGCTGGACTCCCGGTCGGACGGCAGTGGCGAGGGAGATGACTACGTCC
CTAATTCGACGATGATGATGGTCACTGATTATTTGTTTCATTTTTACGTT
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9353:4174..5376+

>mRNA_Ecto-sp13_S_contig9353.20956.1 ID=mRNA_Ecto-sp13_S_contig9353.20956.1|Name=mRNA_Ecto-sp13_S_contig9353.20956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9353:4174..5376+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAATAATCATGAGCGGAGCTGTCTGGGCGGGCATCGTGGTGACCAA
GTGCGTAATCTCCAAGGTCTTGGTATGGACGGCCCTCGAACGATGCATGT
GGCAGGACGAGAACAGGGAACACGAGACCAATAGTAGTGACGAAGAAGCA
CGCGATGATGGTGAAGATGTGCCAGAAGAGTATGCCCAGGAAGTCGACGA
CGATGAGGAAGAGGACCAGCAGCCCGTGGATGGCGCCACGAAAAGGACTC
TCGGCACACTGAAGCAAGGTAGTGGCCGGGAGCTGACACCGCGGGAGGAC
CGCTTGCAGTCCGAGTCGTCTACCGGGGACAACTCGCTGGACTCCCGGTC
GGACGGCAGTGGCGAGGGAGATGACTACGTCCCTAATTCGACGATGATGA
TGGTCACTGATTATTTGTTTCATTTTTACGTTTGA
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