mRNA_Ecto-sp13_S_contig9349.20949.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9349.20949.1
Unique NamemRNA_Ecto-sp13_S_contig9349.20949.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9349.20949.1 vs. uniprot
Match: A0A6H5K723_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K723_9PHAE)

HSP 1 Score: 512 bits (1319), Expect = 1.320e-171
Identity = 266/313 (84.98%), Postives = 275/313 (87.86%), Query Frame = 1 
Query:  922 VPPKPLRQQSFDPHCKIRDSSLADVCLMPDAKPQLPPPPALDGSVKDWEAAAVTVTTIGTTEWSATSSGGVPYGVQHNRYAHHPGVSPVPSCNSDQGYARTDAIRHQVAPPPTPQVHHERKSSFNLLASMIPDISKVGGRPSSPMVAVWPGAAGGGGTVGRFSSPGVSPSMMTLEDQSEGATLWTREAALARYHRKRKRRPFVKAMRENDPNRKEQNKARERPRNGGKFQKKGKDFVSVKELQRAGDNRSVSGELPPPPARESTPPPTNIRSLNGRPSQGGDTAGAPDGGSSGGSGGSLFLLTPDQVAMLGLK 1860
            +P KPLRQQSFDPHCKIRDS LADVCLMPDAKPQ+PPPPA  G VKDWEAAAVT TT GTTE S TSSGGVPYGVQHNRYAHHPGVS VPSCN DQGY  TD  RHQVAPPPTP+V+HERKSSF+LLASMIPD+SKV GRPS PM A WPGAAGGGG VGRFSSPG S SMM LEDQSEG T WTREAALARYHRKRKRRPFVKAMRENDPNRKEQNKARERPR GGKFQKKGKDFVSVKELQRAGDNRSVSGELPPPPARESTPPPTNIRSLNGRPSQ GDT GAP GG       SL++LTPDQ A LGL+
Sbjct:  300 IPHKPLRQQSFDPHCKIRDSFLADVCLMPDAKPQIPPPPAPGGLVKDWEAAAVTATTTGTTERSGTSSGGVPYGVQHNRYAHHPGVSLVPSCNGDQGYPPTDT-RHQVAPPPTPRVYHERKSSFSLLASMIPDMSKVSGRPSLPMAAAWPGAAGGGGIVGRFSSPGASSSMMILEDQSEGETTWTREAALARYHRKRKRRPFVKAMRENDPNRKEQNKARERPREGGKFQKKGKDFVSVKELQRAGDNRSVSGELPPPPARESTPPPTNIRSLNGRPSQEGDTVGAPGGGXXXXXXXSLYVLTPDQAAKLGLR 611
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BLAST of mRNA_Ecto-sp13_S_contig9349.20949.1 vs. uniprot
Match: D7FPL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL1_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 1.220e-68
Identity = 126/148 (85.14%), Postives = 130/148 (87.84%), Query Frame = 1 
Query: 1432 MMTLEDQSEGATLWTREAALARYHRKRKRRPFVKAMRENDPNRKEQNKARERPRNGGKFQKKGKDFVSVKELQRAGDNRSVSGELPPPPARESTPPPTNIRSLNGRPSQGGDTAGAPDGGSSGGSGGSLFLLTPDQVAMLGLKERESR 1875
            MMTLEDQSEGAT WTREAALARYH KRKRRPFVKAMRENDPNRKEQNKARERPRNGGKFQKKGKDFVSVKELQRAGD+RSVSGELPPP ARESTPPPTNIRSLNGR SQ GDTAGAP          SL+LLTPDQ A LG KER++R
Sbjct:    1 MMTLEDQSEGATEWTREAALARYHHKRKRRPFVKAMRENDPNRKEQNKARERPRNGGKFQKKGKDFVSVKELQRAGDSRSVSGELPPPLARESTPPPTNIRSLNGRLSQEGDTAGAPGXXXXXXXXXSLYLLTPDQAAKLGFKERDNR 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9349.20949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K723_9PHAE1.320e-17184.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPL1_ECTSI1.220e-6885.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9349contigEcto-sp13_S_contig9349:101..3166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1981
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_001010.1
Cds size1023
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464203.8350842-UTR-Ecto-sp13_S_contig9349:100..5991681464203.8350842-UTR-Ecto-sp13_S_contig9349:100..599Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9349 101..599 -
1681464203.8473246-UTR-Ecto-sp13_S_contig9349:1674..20991681464203.8473246-UTR-Ecto-sp13_S_contig9349:1674..2099Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9349 1675..2099 -
1681464203.8812034-UTR-Ecto-sp13_S_contig9349:3132..31661681464203.8812034-UTR-Ecto-sp13_S_contig9349:3132..3166Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9349 3133..3166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464203.8588896-CDS-Ecto-sp13_S_contig9349:2099..22391681464203.8588896-CDS-Ecto-sp13_S_contig9349:2099..2239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9349 2100..2239 -
1681464203.8702385-CDS-Ecto-sp13_S_contig9349:2249..31321681464203.8702385-CDS-Ecto-sp13_S_contig9349:2249..3132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9349 2250..3132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9349.20949.1prot_Ecto-sp13_S_contig9349.20949.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9349 2100..3132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9349.20949.1

>prot_Ecto-sp13_S_contig9349.20949.1 ID=prot_Ecto-sp13_S_contig9349.20949.1|Name=mRNA_Ecto-sp13_S_contig9349.20949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
MAFSSELGLPPGASPSDADRYEMTGQTSFERFSSRQHPLPLYWDKPKALE
RRSISAEEGMVAIALQNLGKPRTPSQPNDTDYGGGGRCDSGTWPMVHLIG
TGGEGVPDLQHVGGRREPETSTAADRNDAQLLLRSASGSRGGIGGLRGEQ
QDIREMQELESSMPTTAPFEGFRSDDGRSSGRSNSRKARLAASRNDVSSQ
PIWRTGDSSSLSRLLDWGYKSSSGSGSSGGEGPGVAQGTTHAAGSSSNGI
SGGGGGGGSASWERHPLTGAGGAAMTHDGIIIDRNSSSSSSSSSTMFHPS
PFDSSRSTPIARSATLPLQTFASCPTPNLNYHHLQRSTAR*
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mRNA from alignment at Ecto-sp13_S_contig9349:101..3166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9349.20949.1 ID=mRNA_Ecto-sp13_S_contig9349.20949.1|Name=mRNA_Ecto-sp13_S_contig9349.20949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3066bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9349:101..3166- (Ectocarpus species13 EcNAP12_S_4_19m)
GGATCACCCAAGGAAGTAAAGAACCGACGCTTACATGGCCTTCAGCAGCG
AATTGGGGCTTCCCCCGGGCGCCAGTCCTAGCGATGCCGATCGCTACGAG
ATGACGGGGCAGACTTCGTTCGAGCGTTTCTCGAGTCGTCAGCATCCGCT
TCCGCTTTACTGGGACAAGCCTAAAGCCCTGGAAAGGAGGTCGATTAGCG
CGGAGGAGGGAATGGTCGCCATTGCCCTCCAAAACCTCGGGAAGCCGCGA
ACGCCGAGCCAGCCTAATGATACCGACTATGGCGGGGGTGGGCGCTGCGA
TTCGGGCACTTGGCCGATGGTGCATCTCATCGGTACGGGCGGCGAAGGTG
TCCCAGATTTGCAACACGTCGGAGGGCGACGAGAACCTGAGACCTCCACT
GCTGCTGATCGCAACGACGCGCAGCTCCTGCTGAGGAGTGCGAGCGGGAG
CCGCGGCGGCATCGGCGGCCTCAGGGGGGAGCAGCAGGACATCCGAGAGA
TGCAGGAGCTGGAGTCCTCTATGCCTACTACAGCTCCGTTCGAAGGCTTT
CGCTCTGACGACGGCAGGAGCAGCGGCAGGAGCAACAGCAGGAAGGCCAG
ATTAGCCGCTTCTCGGAATGATGTCTCAAGCCAGCCAATCTGGCGTACGG
GAGACTCGAGCTCGTTGAGTCGCTTGCTGGACTGGGGCTACAAGAGCAGC
AGCGGCAGTGGGAGCAGTGGCGGCGAAGGGCCGGGGGTGGCCCAGGGCAC
AACGCACGCCGCTGGAAGCAGCAGCAACGGCATCAGCGGCGGCGGCGGCG
GCGGCGGCAGCGCCTCCTGGGAACGTCATCCCCTCACCGGCGCCGGCGGA
GCTGCTATGACACACGACGGCATCATCATCGACAGGAACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCCATGTTCCACCCAAGCCCCTTC
GACAGCAGTCGTTCGACCCCCATTGCAAGATCCGCGACTCTTCCCTTGCA
GACGTTTGCCTCATGCCCGACGCCAAACCTCAACTACCACCACCTCCAGC
GCTCGACGGCTCGGTGAAGGACTGGGAGGCGGCCGCGGTTACGGTAACCA
CAATAGGCACAACGGAATGGAGCGCAACCAGCAGCGGTGGTGTACCATAC
GGTGTCCAACACAACCGCTACGCCCATCACCCAGGCGTTAGTCCAGTGCC
CTCCTGCAATAGCGACCAAGGCTACGCCCGAACAGATGCGATACGACACC
AAGTAGCTCCGCCTCCCACCCCGCAAGTCCACCATGAGAGGAAGTCGAGC
TTCAATCTTCTCGCGAGCATGATCCCTGACATTTCCAAGGTGGGCGGCCG
GCCGAGCTCGCCAATGGTGGCGGTGTGGCCGGGAGCAGCAGGTGGTGGTG
GTACCGTAGGGAGATTCAGTTCGCCGGGAGTGTCGCCATCGATGATGACC
CTGGAGGACCAATCTGAAGGCGCGACACTGTGGACGCGAGAGGTAAGATC
TAGTATTGTAGACTGCTTCTATTATTTTAGGCGTGTTGTCCAGAAACGCT
GGCTGCTGCGTTGCCCGCCAGTCTATTTTTCGACTTCTTCTGTAGTTGAT
TCAGGGCTGCAGAAAATGACGCGGAAACCGTTCACAACCATATCCTGATT
TTTTTTTTGCGATGTTTCCCCACGGTGTCTTACAAAAGATGCGTGCAATA
CCGCTTTTCCTCCGAAGGCAAAGAAGCGATTCATTCGTATGCTAGTCACC
CAAAACCTGAATTGCAGTTTGTTCCGAAGATGTCGCAAGCTATCTACCTT
GGTACAATATTTGTTACTAAATAACCGTGACTTGTGGTGCTGGAGTTTAT
CGGGGGAAAATAATTTTCCGTGAAAATTCGTCGGCTGGAACGGACGTATG
TGAATGTTGCCCCTTCGCACCGGACGCACTTGGGCGAAGTTTGCGGGTCT
CTTGTTTCCACTTCCCGCTCACCTGGTTTGTTTTGTTTCAGCCGTTACGG
CGGCGGGCACTTCAAGCGTAGCTCTCCGAATATTTGCAATTTTTCCTGAC
GACAGAAGTAGTACACTGGCTGGGCCAGGCTTTTGGCGCTACGTTGTGAC
TTTTGCACGGGCTGGCGCAGCGCTTTCTGTCATTTCGTCGACTCAACTCC
ACCACTATGTTAGTAGACACTGACCTCTCGCCCCCCGAAGGTGTGCATAG
GAGGACTGGTTTGGGTAGTCGTCTTCGTATGCATAAGAATTGGCCCTATT
GGCGATTGCTTTGGCTTCGCGATAGGGAATACCTGTACAAGAATAGCCAA
GATCAACTACAAAATCGCAACACCCGAACAACGAATGAAGGCATTTTCAG
GCGGCGCACACTCCAAGAATTTCTGTCCAACAGGGACAAAGCTCCACTTT
CGAGTCCACTTCAAGCCTACAGCGGTCGGTGGTCAACTGAGAACGTCTCC
CTTGAGCACACTCATACCTCAACTCTTTCTGTGTGTGCTCGTTGGCATGT
TTAGAAAGAGATACAACAACTTGCCTCCTCTTGCGACACCGCTGTGGTGT
GCTTCACAATCACGCAGGCTGCCCTCGCCCGCTACCATCGCAAGAGAAAG
CGCCGGCCGTTCGTCAAGGCGATGCGCGAGAACGACCCCAACCGCAAGGA
GCAAAACAAGGCCAGAGAAAGGCCAAGAAACGGTGGCAAGTTCCAGAAAA
AGGGTAAAGACTTCGTTTCCGTGAAGGAGCTGCAAAGGGCTGGAGACAAC
CGCTCCGTCAGCGGAGAGTTACCGCCGCCCCCCGCGCGCGAGTCGACACC
ACCGCCCACGAATATTAGGTCCCTCAATGGTAGACCATCCCAGGGGGGTG
ATACAGCGGGCGCCCCCGACGGCGGCAGCAGTGGCGGCAGCGGCGGCTCC
CTGTTTTTGCTCACTCCTGATCAGGTCGCCATGTTAGGCTTAAAGGAGAG
GGAAAGCAGGTAGTTGAGTTGTACGCTGCGTACCGGAAATGTTTGAGTTT
GTCGGTTTTGCCCTTGCCAGTGGTTTCCTAGAGTCGGGGCCTGCATCGAT
CAATCCAAGCGGTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9349:101..3166-

>mRNA_Ecto-sp13_S_contig9349.20949.1 ID=mRNA_Ecto-sp13_S_contig9349.20949.1|Name=mRNA_Ecto-sp13_S_contig9349.20949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9349:101..3166- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTTCAGCAGCGAATTGGGGCTTCCCCCGGGCGCCAGTCCTAGCGA
TGCCGATCGCTACGAGATGACGGGGCAGACTTCGTTCGAGCGTTTCTCGA
GTCGTCAGCATCCGCTTCCGCTTTACTGGGACAAGCCTAAAGCCCTGGAA
AGGAGGTCGATTAGCGCGGAGGAGGGAATGGTCGCCATTGCCCTCCAAAA
CCTCGGGAAGCCGCGAACGCCGAGCCAGCCTAATGATACCGACTATGGCG
GGGGTGGGCGCTGCGATTCGGGCACTTGGCCGATGGTGCATCTCATCGGT
ACGGGCGGCGAAGGTGTCCCAGATTTGCAACACGTCGGAGGGCGACGAGA
ACCTGAGACCTCCACTGCTGCTGATCGCAACGACGCGCAGCTCCTGCTGA
GGAGTGCGAGCGGGAGCCGCGGCGGCATCGGCGGCCTCAGGGGGGAGCAG
CAGGACATCCGAGAGATGCAGGAGCTGGAGTCCTCTATGCCTACTACAGC
TCCGTTCGAAGGCTTTCGCTCTGACGACGGCAGGAGCAGCGGCAGGAGCA
ACAGCAGGAAGGCCAGATTAGCCGCTTCTCGGAATGATGTCTCAAGCCAG
CCAATCTGGCGTACGGGAGACTCGAGCTCGTTGAGTCGCTTGCTGGACTG
GGGCTACAAGAGCAGCAGCGGCAGTGGGAGCAGTGGCGGCGAAGGGCCGG
GGGTGGCCCAGGGCACAACGCACGCCGCTGGAAGCAGCAGCAACGGCATC
AGCGGCGGCGGCGGCGGCGGCGGCAGCGCCTCCTGGGAACGTCATCCCCT
CACCGGCGCCGGCGGAGCTGCTATGACACACGACGGCATCATCATCGACA
GGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCACCATGTTCCACCCAAGC
CCCTTCGACAGCAGTCGTTCGACCCCCATTGCAAGATCCGCGACTCTTCC
CTTGCAGACGTTTGCCTCATGCCCGACGCCAAACCTCAACTACCACCACC
TCCAGCGCTCGACGGCTCGGTGA
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