mRNA_Ecto-sp13_S_contig9327.20923.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9327.20923.1
Unique NamemRNA_Ecto-sp13_S_contig9327.20923.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: A0A6H5JFB5_9PHAE (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFB5_9PHAE)

HSP 1 Score: 553 bits (1426), Expect = 5.390e-191
Identity = 272/277 (98.19%), Postives = 275/277 (99.28%), Query Frame = 1
Query:    1 QVFMCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQEEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMSTSEAKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDYETLPNAIVPVMSELFKAPLTPEEEYYALEV 831
            QVFMCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQ+EIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGM QRPSRSTPCLRSMGSPPDETAKLLGMSTSEAK APFERYCAAHLATLVESALESVDDAA+SGGAEGHAVDYETLPNAIVPVMSELFKAPLTPEEEYYALE+
Sbjct:   95 QVFMCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQDEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMTQRPSRSTPCLRSMGSPPDETAKLLGMSTSEAKKAPFERYCAAHLATLVESALESVDDAAASGGAEGHAVDYETLPNAIVPVMSELFKAPLTPEEEYYALEI 371          
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: A0A7S2GE74_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GE74_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.270e-53
Identity = 114/277 (41.16%), Postives = 156/277 (56.32%), Query Frame = 1
Query:    4 VFMCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQEEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMSTSEAKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDYETLPNAI-VPVMSELFKAPLTPEEEYYALEV 831
            V +C LD DTY+  P K PMF+DLV  S  C+G       +S L+ E++A+P+G L+PTGFVFH SRCGSTL A+++GS  H++ +SES PP A+           E+ V  LRTV+L M ++S+H   FFKFQS     I  +  AFP TPW FV+R+PV VMMS   FK G     +    CLR+   P     K++     E  +   E +CA HLA L E A       A +  A G  ++YE LP  + + V+ + F+AP+  E +   LEV
Sbjct:  121 VTLCKLDYDTYWRNPDKLPMFRDLVAASK-CRGKNVKEEKLSVLKAEMEADPDGTLQPTGFVFHESRCGSTLVADMLGSQAHHLTFSESSPPAAIAG-------KGERHVGILRTVMLLMCRSSYHTRCFFKFQSVNAPRIRIFAAAFPETPWAFVFREPVQVMMS--HFKGG-----TGGAVCLRARNRPEKGHRKIIS-ELGETDHLSAEEFCAVHLAYLSECAYS-----AYTSTANGLLLNYEDLPEILPMKVLKDHFRAPVDSEGQARMLEV 376          
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: A0A7S2SP01_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP01_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.540e-52
Identity = 109/266 (40.98%), Postives = 158/266 (59.40%), Query Frame = 1
Query:    4 VFMCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQEEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMSTSEAKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDYETLPNAIVP-VMSELFKAPL 798
            V +C L+ D Y+ +P   PMFK LV  S  C+G+      +S L++E++A+P+G L+PTGFVFH +RCGSTL A+++ S PH++V+SES PP +V +           R + LR V+L M ++ +H   FFKFQS  T  I  +++AFP  PW FV+R+PV VMMS   FK G     +    CLRS  SP      +LG+S+   +    E +CAAHLA L +SAL     AA    + G  + YE LP+A++  ++ + F AP+
Sbjct:  135 VTLCKLNYDKYWREPSSLPMFKHLVGASN-CRGSNYRTERLSTLKKEMEADPDGTLQPTGFVFHETRCGSTLVADMLASHPHHLVFSESSPPASVAAT---------GRASVLRDVMLLMCRSHYHTRCFFKFQSINTPRIGVFQQAFPEVPWAFVFREPVQVMMS--HFKGG-----TSGAVCLRSKSSPTKAHLAILGVSSG--RRVSNEDFCAAHLAYLSQSAL-----AAFERSSNGMMLSYEDLPDAVISKLLPQHFAAPV 376          
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: A0A7S2H7V9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H7V9_9STRA)

HSP 1 Score: 181 bits (459), Expect = 7.790e-51
Identity = 114/279 (40.86%), Postives = 160/279 (57.35%), Query Frame = 1
Query:   10 MCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQEEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLL---GFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMSTSEAKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDYETLPNAIVP--VMSELFKAPLTPEEEYYALEV 831
            +C LD D+Y+  P   PMFKDLV  S  C G  S +  +S L++E++A+P+G L+PTGFVFH SRCGSTL A+++GS  H++V+SES PP ++ S           RV  LR V+L M ++S+H   FFKFQS     I  Y  AFP+ PW FV+R+PV VMMS L   G  AG          C+RS  SP  +  +++      + +   E +CA HLA L ESA E+    ++     G  ++YE LP+ I+P  V+ + F+ PL  E +   L V
Sbjct:  104 LCKLDYDSYWRNPNNLPMFKDLVGKSK-CSGKNSKSAKLSVLKKEMEADPDGTLQPTGFVFHESRCGSTLVADMLGSQAHHLVFSESAPPSSIASRGPNA-----HRV--LRDVMLLMCRSSYHTRCFFKFQSINAPRIKTYLAAFPDVPWTFVFREPVQVMMSHLKGSGSHAG--------AVCMRSRRSPTAKHKQIIAELGKGSSSVSAEEFCAVHLAYLSESAYEAFTSTST-----GMLLNYEDLPS-ILPSKVVGDHFRVPLDAEGQTRMLNV 360          
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: A0A7S3ZKE9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZKE9_9STRA)

HSP 1 Score: 181 bits (460), Expect = 1.280e-50
Identity = 114/274 (41.61%), Postives = 155/274 (56.57%), Query Frame = 1
Query:    1 QVFMCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQEEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGK--TSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLL-GMSTSEAKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDYETLPNAIVP-VMSELFKAPLTPEE 810
            +V +C L  DTY+  P K PMF+DL   S   +G   T  ++ +   + +  P   ++P+GFVFH SR GSTL AN++ + P NIVYSES PP AV++ C    C+++++   L+ +I  MG   T++H H+FFKFQS+    I     AFP TPW+FVYRDPV  MMS   FK G+      + PCLR   SPP  T K+L   S ++A     E YCAAHLA L  SAL+     A      G  VDY ++P A+   V  + F   L PE+
Sbjct:  123 RVSLCKLAFDTYWRDPSKTPMFRDLASASRCGRGRAGTLNTLYEDMRKKNIKP---VKPSGFVFHESRVGSTLVANMLAAVPTNIVYSESAPPPAVLNHCRS--CSKQRKTDILQKLIALMGASPTNYHTHLFFKFQSATVPNIRSLLDAFPETPWLFVYRDPVQTMMS--HFKNGVG-----NGPCLRQRRSPPPATIKILKAESAAKASRTSPENYCAAHLAMLTSSALD-----ADGSSDRGLLVDYASMPGALEAYVFPKHFGLSLAPED 379          
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: A0A4D9CT70_9STRA (JmjC domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT70_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.510e-46
Identity = 99/255 (38.82%), Postives = 135/255 (52.94%), Query Frame = 1
Query:   10 MCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQEEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMSTSEAKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDYETLPNAIVPVM 774
            +C  D   Y   P ++PM +DLV         +    S+  + E         L+PTGF+FH SR GSTL AN++ S P N+VYSE   P  V+ LC   GC+EE  V  LR  ILAMG++  H H F KF SS    +    KAFP TPW ++YRDPV +++S   F+ G      R  PC+R+  + P     +L      A     E YCAAHL  L ++ALE ++      G++GHAV YETL   ++ V+
Sbjct:  162 LCQFDISPYHRNPEQFPMSRDLVGAFCSKNRLKHKLASVHAVDERAGKQ----LQPTGFIFHESRVGSTLVANMLASVPTNLVYSEPSVPAHVIHLCKSAGCSEETTVRLLRMAILAMGRSHHHDHFFIKFSSSTVVDMDLILKAFPETPWAYIYRDPVEIIVS--NFQRG------RGGPCIRAKKNAPKAVQDILKTDRRGASRVSDEEYCAAHLTMLCQAALEQME----LPGSKGHAVAYETLVEDVLRVL 400          
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: A0A7S2XNG6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNG6_9STRA)

HSP 1 Score: 167 bits (422), Expect = 5.460e-45
Identity = 110/267 (41.20%), Postives = 150/267 (56.18%), Query Frame = 1
Query:   13 CSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATS--ISKLQEEIDAN--------PEGYLEPTGFVFHMSRCGSTLTAN-LMGSSP-HNIVYSESKPPVAVMSLC--DQVGCTEEQRVAALRTVILAMGKTSF--HKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMSTSE-AKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDYETLPNAI 762
            C L+   + + P KYPMF+DLV  S  CQ +  T     I++L  E DA         P   +EPTGFVFH SRCGSTL AN L+G  P H+ VYSES PP+  ++ C  D   C  E      R V+  MG+T+     ++FFK QS+ ++ I  ++ AFP+TPW+FVYR+PV VMMS L      R        C+RS  SPP     L+     E A +  +E YCAAHLA + ESA++++  +A+     G AV+Y TLP+ +
Sbjct:  127 CQLNFAAHKNDPSKYPMFRDLVAASPDCQKSHVTLDLKYIAELAREFDAEMTELGTKVPHA-MEPTGFVFHESRCGSTLVANSLIGMDPKHHRVYSESAPPLQALTACGEDYQSCDVEIAADLFRDVVYLMGRTNDAEESNLFFKIQSAGSKNIATFQTAFPHTPWIFVYREPVQVMMSQL------RVARIEQANCVRSRRSPPKRIKSLVQKIIREHASDLDYEDYCAAHLAVICESAVKALQTSAN-----GLAVNYNTLPDIL 381          
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: A0A7S3GTU2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GTU2_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.020e-44
Identity = 108/279 (38.71%), Postives = 144/279 (51.61%), Query Frame = 1
Query:    4 VFMCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQEEIDANPEG----YLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMSTSEAKNAPFERYCAAHLATLVESALES-------VDDAASSGGAEGHAVDYETLPNAIVPVMSELFKA-PLTP 804
            V +C L+   Y   P+  PMFKDLV  S  C GA     S+  L +EI  NP       + P GFVFH SR GSTL AN M S P+ +V+SES P  + M  C+   CT E  V   R V   MG++ FHKH+FFKFQS     ++   +AFP+ PW FVYR PV  MMS L       Q    + PC+RS   PP +  + +    +   +AP E +CAAHL  L   A+ +       VD A +     G  + Y++LP  +  ++  LF+  PL P
Sbjct:    9 VILCKLNFQKYAESPHLSPMFKDLVGNSK-CMGANRRRESLKTLMQEIADNPNDPNSRVVPPNGFVFHESRVGSTLIANFMASDPYAMVFSESTPMASAMLHCES--CTHEYNVQLFRDVTTLMGRSPFHKHLFFKFQSITVTSMNIALEAFPDVPWAFVYRQPVQTMMSHLDPAKSNNQA---NAPCMRSKRHPPRDVQEAI-TQFAPGWSAPNEAWCAAHLNMLCNYAIRNFEKYGTRVDPATNQVVQRGVLIPYDSLPGFVPQILLPLFRINPLPP 280          
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: F2UI36_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UI36_SALR5)

HSP 1 Score: 169 bits (428), Expect = 3.360e-44
Identity = 104/254 (40.94%), Postives = 146/254 (57.48%), Query Frame = 1
Query:    1 QVFMCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQEEIDANPEGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQVGCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMSTSEAKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDYETLPNAI 762
            +V +C L+ + Y  +PYKYPMFKDL+++S  C+G   T T ++ L+  I   PE  L+P GFVFH SR GSTL AN++ + P N+V+SES PP A+   C        ++   +R ++ AM  +  HK +FFKFQS     I  Y +AFP  PW+FVYRDPV VM S    K     +     PCLR+  SP     + +      +KN   E +CAAHLATL +SAL ++D + +     G AV+Y  LP+ +
Sbjct:   83 KVELCRLNIEAYTAEPYKYPMFKDLLRVSN-CKGNTMTVT-LNDLRFGI---PET-LDPAGFVFHESRVGSTLIANILAADPDNLVFSESAPPPAIALHCP---APLPEKAEMMRVLLRAMSNSVRHKRLFFKFQSVNANAIPLYTEAFPEVPWMFVYRDPVEVMASHFKQKVPAGAK----VPCLRAKNSPTPLHRRYI-----RSKNPSDEEFCAAHLATLCDSALHALDSSPN-----GIAVNYHDLPDVL 313          
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Match: A0A7S4JXS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JXS8_9STRA)

HSP 1 Score: 161 bits (407), Expect = 8.850e-43
Identity = 108/289 (37.37%), Postives = 148/289 (51.21%), Query Frame = 1
Query:   13 CSLDRDTYFHQPYKYPMFKDLVKLSGGCQGA--QSTATSISKLQE------------EIDANPEGYLEPTGFVFHMSRCGSTLTANLMGS-SPHNI-VYSESKPPVAVMSLCDQVG--CTEE--QRVAALRTVILAMGKTSF--HKHMFFKFQSSQTRFIHYYRKAFPNTPWVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMSTSEAKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDY-ETLPNAIVPVMSELFKAPLTPEE 810
            C+LD   +   P   PMF+DLV  S  C     +     ++KL               ++      +EPTGFVFH SRCGSTL AN + + SP +  VYSES PP+  M  C + G  C        A L+  +  MG+T+    +H+FFK QS  TRFI  +R+AFP+TPW+FVYRDPV VMMS L      R        C+R   SPP+    L+     +  +   E YCAAHLAT+  SAL  ++ + +     GHAV+Y + + +    V+   FK PL  +E
Sbjct:  140 CALDWALHKADPSSVPMFRDLVGKSQDCSNGSFRMDLKEVAKLARAHDNEAMRAAGGRVEDAATRAMEPTGFVFHESRCGSTLAANTLAAMSPDSSRVYSESPPPLKAMIACGEAGEKCAGSIGSAAALLKDAVYMMGRTNDPEERHLFFKVQSIGTRFIKVFRRAFPDTPWIFVYRDPVQVMMSHLDMPHMERAN------CVRPRASPPNSVRDLVRSEGMKVSSLTHEEYCAAHLATICNSALAELESSET-----GHAVNYNDIIDDLTTRVIPHHFKVPLNDQE 417          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9327.20923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFB5_9PHAE5.390e-19198.19JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2GE74_9STRA1.270e-5341.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SP01_9STRA4.540e-5240.98Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2H7V9_9STRA7.790e-5140.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3ZKE9_9STRA1.280e-5041.61Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A4D9CT70_9STRA2.510e-4638.82JmjC domain-containing protein n=3 Tax=Monodopsida... [more]
A0A7S2XNG6_9STRA5.460e-4541.20Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3GTU2_9STRA1.020e-4438.71Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F2UI36_SALR53.360e-4440.94JmjC domain-containing protein n=1 Tax=Salpingoeca... [more]
A0A7S4JXS8_9STRA8.850e-4337.37Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9327contigEcto-sp13_S_contig9327:15..3569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score539.7
Seed ortholog evalue8.2e-151
Seed eggNOG ortholog2880.D7FL26
Model size831
KEGG koko:K10277
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.tRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
EggNOG OGsKOG2132@1,KOG2132@2759
Ec32 ortholog descriptionSecreted sulfotransferase domain and cupin superfamily protein
Ec32 orthologEc-05_006990.1
EC1.14.11.27
Cds size822
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9327.20923.1prot_Ecto-sp13_S_contig9327.20923.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9327 15..3560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.7008667-CDS-Ecto-sp13_S_contig9327:14..1851681464201.7008667-CDS-Ecto-sp13_S_contig9327:14..185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9327 15..185 -
1681464201.718173-CDS-Ecto-sp13_S_contig9327:610..7451681464201.718173-CDS-Ecto-sp13_S_contig9327:610..745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9327 611..745 -
1681464201.7285364-CDS-Ecto-sp13_S_contig9327:1035..11191681464201.7285364-CDS-Ecto-sp13_S_contig9327:1035..1119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9327 1036..1119 -
1681464201.7385082-CDS-Ecto-sp13_S_contig9327:1545..16561681464201.7385082-CDS-Ecto-sp13_S_contig9327:1545..1656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9327 1546..1656 -
1681464201.7486055-CDS-Ecto-sp13_S_contig9327:2096..22881681464201.7486055-CDS-Ecto-sp13_S_contig9327:2096..2288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9327 2097..2288 -
1681464201.7605968-CDS-Ecto-sp13_S_contig9327:3029..30981681464201.7605968-CDS-Ecto-sp13_S_contig9327:3029..3098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9327 3030..3098 -
1681464201.7756157-CDS-Ecto-sp13_S_contig9327:3500..35601681464201.7756157-CDS-Ecto-sp13_S_contig9327:3500..3560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9327 3501..3560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464201.7880263-UTR-Ecto-sp13_S_contig9327:3560..35691681464201.7880263-UTR-Ecto-sp13_S_contig9327:3560..3569Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9327 3561..3569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9327.20923.1

>prot_Ecto-sp13_S_contig9327.20923.1 ID=prot_Ecto-sp13_S_contig9327.20923.1|Name=mRNA_Ecto-sp13_S_contig9327.20923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MCSLDRDTYFHQPYKYPMFKDLVKLSGGCQGAQSTATSISKLQEEIDANP
EGYLEPTGFVFHMSRCGSTLTANLMGSSPHNIVYSESKPPVAVMSLCDQV
GCTEEQRVAALRTVILAMGKTSFHKHMFFKFQSSQTRFIHYYRKAFPNTP
WVFVYRDPVPVMMSLLGFKAGMRQRPSRSTPCLRSMGSPPDETAKLLGMS
TSEAKNAPFERYCAAHLATLVESALESVDDAASSGGAEGHAVDYETLPNA
IVPVMSELFKAPLTPEEEYYALEV
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mRNA from alignment at Ecto-sp13_S_contig9327:15..3569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9327.20923.1 ID=mRNA_Ecto-sp13_S_contig9327.20923.1|Name=mRNA_Ecto-sp13_S_contig9327.20923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9327:15..3569- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTTCATGTGCAGCTTGGACCGGGATACATACTTCCACCAGCCGTA CAAGTATCCCATGTTCAAGGTGAGTGAATGTGGTATCGTGCTACCCGTGC TGCCATCACAGCAGTGTAGATCTCCTACTGATACATGCATGGACGTGCTG TACGCCTGTGCATTGCTAATGTAGGCTAGTGCTGTAGGTGTTCGTTCGAT TCTTCACTGACCACGAACATCAAAAGTGGTATGGCGTGGTGTTGTATGGT GAGGCCGCGTTGACCGAAAGGGTGCATTTTTTCGCCCACCACCAATATTG CTGTGCACGATGGAGAGAATCCCGTGTTGTACGAGGTGCTGTATCGGCTT TCTATCGTAGTAGGGTTTTGAATCAACTGTCGGAGGTGCAGGCTGTGGTT GCTATTTATACATTCTCCGCACCTCTCTATCTCACCGTGCCACCGTGCTG TTAATGCATGTACTCTGGCAGGACCTGGTGAAGCTGTCCGGTGGGTGTCA AGGAGCACAATCTACAGCTACTAGCATCTCCAAGTTGCAAGTAAGTGCAC GGTTTCTTTTCGTACTGTAGTCTTCATACTTTTACGACCACGCATGCCGC TAGGACACTCCAGAGATATTTCGTTCGGGTGATAAAGTTTGAAATGTATG GTGCCAAAGCACATGGTTCCGAGCGTGCCGTAGTATCGATCGTGTGTGCT TTCAATCAAGTGGGTTCAAACAATGGTGCACCGGTCGCCCCGGTCTAGTG GGTACCCTCTCAGTCTACGAAGGGCCAGGCCACGGGTCCGAGTCCCTGCA GAGTGATTTTTTTCTCATCATGTAAATCCTGGTCTCCGTTGGAAGCGACG CGCCGCAAAGCTCATTGTAAGTAAATTTGATCGACTTCGTAAGTCGCGAG GGAAGGGATTGCTGTACCCTACTCGCGATAAAAATCATTTCAGGCAGCAA CCGCAGGAGGGGGACCAACCCCCCCCTCCTATGTGACCCCGGTTGGGTCG TCTAGCTACTAGTAGAAGTGGAGGATGGGGGCCAGAGGGGCAGACGACAG AGTCCAATGATGGGAGAAAAAAAAAAAATGCCCCGTTGTGATAGATACGA TGTTCAAGGTTGGGCATTGCATCGCATATCTGACGTCCGATCCGATCAAT CTACAAGTAGGTCAGGCGTGGTGACACTATCTATGCACGGCTGCTGACTC TCTCTTTTATTCCGTCACTTCTCTGTCCTCCCCGAACTTGTTGGTACCCT AATGGACAATCATCGTCATCATCAACAACAGGAGGAGATCGACGCTAATC CTGAGGGCTACCTTGAGCCAACGGGGTTCGTGTTCCACATGTCGCGGTGT GGCTCCACCCTCACGGCGAACCTCATGGGGTCCTCCCCCCACAATATTGT CTACTCGGAGTCCAAGCCGCCAGTCGCTGTCATGTCGCTGTGCGATCAAG TGGGCTGCACGGAGGAACAGAGGGTGAGAAGTGACAATCATGGTGATCAC GAAAATCAGCCCCTCGACGGCATATGTAGCACCGTTGTTTTTTTTTGTAC GGATGCTGCGTTTTGTTCGTTAGTCGTAGTCAGCGCGTGCCATCCCTTTG AGCACATCGAAATACGGCAATTAAGGAAGCAGTCGCATATGTAGGCGCTG GTAAGTGCTTGTATGGGCTGCGTTTGGTAGGGCTTGTTGGCGTGGGCAGC AGTTGGTTATTGGTCTTGGCGACGAAGAAATGAGCGGGGGAGTCAAAGAC GGGCCTCGAGGGGGGGTGTTCGACGTCGACGTTTGTGGAACATGCTGTTG CTCTATTATAGTTGTGCTTTTCGCCGTCCAACGTGAATGTATGACATACT CCGGGCGTTGGTTGGTCTCTCAAACCACAAATGTATTTTGGTCGTGGTGT GTGTTGACGACAGGTGGCAGCGCTTCGGACGGTTATTCTGGCCATGGGCA AGACATCCTTCCACAAGCACATGTTCTTCAAGTTCCAGTCTAGCCAGACC CGGTTCATCCACTACTACCGGAAGGTTTGTTACTTTCTTGCGTTTGCTTT ATTGTTCATTGCAGGCAGTATCGTGCATGTGCAGGTGACTGACCTCCATC CCGGTGTGGCCGATGGCGTGGAGAAAGTTTTTGCGACGATGGTGACAGAA ACTTGCACCGTCGAATGGCGTCGGTAGTCGGGCCCCCCTTTTCCTGCTGG GCGTTGTAAGCAAGGGGGCCATTCTGACGCGTGCCTTCAGATGAGACCAG CATCCCAATGAGCAAGGAGACGTGTCGACGCCGCCTATCTATGGCATGTG TACAGTACGCACGAGGCACTCTGCCAGCAGTGCCCTGGTAAATTTTAAAT TATTGTGAAATGGACATGATGACAACCCTGGTCCTCGAACCGGCATTCGT TTTCGTACTCGTCTACTGTACCTTGTTGCGCTTCGTCGGGGATTATGCAG GCCTTCCCAAACACACCATGGGTCTTCGTGTACCGCGACCCTGTGCCGGT GATGATGTCGTTGTTGGGCTTCAAGGCTGGAATGGTGAGTGACCCTTTGG CCTTCGGCCGCCACGCTGTTAGGGTGTTCGGGTGTTGATATCGAGAATTG GCATACAGGAAATGACGTGGCGATTGTTTGATACTGCCGACGGCTTTGTG CTGCTGCCATTCTGTCTGTTTGGTTCTGCGTAATGGCCGCCATGTCCTGT CGTGATCGGCGTACACCATGTACCGTGTGCGTCGTTACGTACAGTTCACC CCGAAATTGTTGTTTCCCTGCCAATGACGCTCCCCCCTCTCTTTGCACAC GCCTGCCGTGTATTCGCTCTTCAGCGCCAACGTCCGAGCCGAAGTACGCC GTGCCTGCGCTCCATGGGTTCGCCCCCCGATGAGACCGCGAAGCTGTTGG GGATGTCGACGTCAGAGGCTAAGAACGCTCCCTTCGAGCGCTATTGCGCC GCACACTTGGTGAGAGTCTGAACCAAGTCTGAGATGGCGTCGACCATTGG AGTGGATGCTTCCTTGCGTTTTATTCCCCTCGGCCTGTCTAGAAGATGCA CACCTGTACGCTTGCAACTTCATGACGCGTCCACTTCGCCAGAGTCTAGT CATTCTCTGGCACCTTGTATTGCTGGGATCATTCTGAGGGCTTCTTCTTA AGGCCCTCCATGCTGTTGCGATTCAATCTCGGCCCCAGCTTGTGGTGGTC AACGTCGCGTCGGCAGGCGAAGACGTGCGCTGCGTACAAGCTTTGAATGG CTCTTGTTGGTTGTTGCCTGGCTTGTAGCAACGATGTGGAATGGCTGCGC TGGAATCGATGACAAGACAATGTTCAAGGTTCTCACCCTAGAACCACGAT CGATGTCTGTGCGTTGTCGCTTCCCTGCGTGCAGGCGACGCTGGTGGAGT CGGCGTTGGAATCCGTGGATGACGCCGCGTCAAGCGGGGGGGCTGAAGGG CATGCGGTGGACTACGAAACCCTTCCCAACGCCATCGTTCCCGTGATGTC GGAGCTGTTCAAGGCGCCACTCACGCCGGAAGAGGAGTACTACGCGCTCG AGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9327:15..3569-

>mRNA_Ecto-sp13_S_contig9327.20923.1 ID=mRNA_Ecto-sp13_S_contig9327.20923.1|Name=mRNA_Ecto-sp13_S_contig9327.20923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9327:15..3569- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCAGCTTGGACCGGGATACATACTTCCACCAGCCGTACAAGTATCC
CATGTTCAAGGACCTGGTGAAGCTGTCCGGTGGGTGTCAAGGAGCACAAT
CTACAGCTACTAGCATCTCCAAGTTGCAAGAGGAGATCGACGCTAATCCT
GAGGGCTACCTTGAGCCAACGGGGTTCGTGTTCCACATGTCGCGGTGTGG
CTCCACCCTCACGGCGAACCTCATGGGGTCCTCCCCCCACAATATTGTCT
ACTCGGAGTCCAAGCCGCCAGTCGCTGTCATGTCGCTGTGCGATCAAGTG
GGCTGCACGGAGGAACAGAGGGTGGCAGCGCTTCGGACGGTTATTCTGGC
CATGGGCAAGACATCCTTCCACAAGCACATGTTCTTCAAGTTCCAGTCTA
GCCAGACCCGGTTCATCCACTACTACCGGAAGGCCTTCCCAAACACACCA
TGGGTCTTCGTGTACCGCGACCCTGTGCCGGTGATGATGTCGTTGTTGGG
CTTCAAGGCTGGAATGCGCCAACGTCCGAGCCGAAGTACGCCGTGCCTGC
GCTCCATGGGTTCGCCCCCCGATGAGACCGCGAAGCTGTTGGGGATGTCG
ACGTCAGAGGCTAAGAACGCTCCCTTCGAGCGCTATTGCGCCGCACACTT
GGCGACGCTGGTGGAGTCGGCGTTGGAATCCGTGGATGACGCCGCGTCAA
GCGGGGGGGCTGAAGGGCATGCGGTGGACTACGAAACCCTTCCCAACGCC
ATCGTTCCCGTGATGTCGGAGCTGTTCAAGGCGCCACTCACGCCGGAAGA
GGAGTACTACGCGCTCGAGGTG
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