mRNA_Ecto-sp13_S_contig9314.20908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9314.20908.1
Unique NamemRNA_Ecto-sp13_S_contig9314.20908.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: D7FRE2_ECTSI (Checkpoint protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE2_ECTSI)

HSP 1 Score: 396 bits (1017), Expect = 1.340e-137
Identity = 203/206 (98.54%), Postives = 205/206 (99.51%), Query Frame = 2 
Query:   86 MRFKAKIVQDKLLAFAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVIDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPRFGE 703
            MRFKAKIVQDKLLAFAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLS+ETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTV+DRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPRF E
Sbjct:    1 MRFKAKIVQDKLLAFAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSIETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVVDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPRFEE 206
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: A0A7S3YAY1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAY1_HETAK)

HSP 1 Score: 220 bits (560), Expect = 4.920e-69
Identity = 107/204 (52.45%), Postives = 152/204 (74.51%), Query Frame = 2 
Query:   86 MRFKAKIVQDKLLAFAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVIDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPRF 697
            MRFKAKI Q  L   +G+I  +EK+   CV++LTE+ + +S++ES  + + V++E+ Q+ LF +YRIES + N IL E   + L +AL SG+ +P CQ+KLAKR G+PCL+VETRALE+++ HD+PVK++   +  ++L P+V  PQVQLELPR RS RTVIDR+K I++ +++DADM G + FRV+  +A IKTFYSNLTPRF
Sbjct:    2 MRFKAKIGQASLGVLSGLISILEKVSQVCVIYLTESSMRISIKES-QDDIQVFSEISQERLFTDYRIESLSNNCILLEVGTANLGRALASGRRAPACQLKLAKRGGRPCLAVETRALEVDIAHDLPVKLLRPGDVRFHLAPEVPRPQVQLELPRGRSFRTVIDRVKGINQHVYIDADMSGTITFRVQTDNAVIKTFYSNLTPRF 204
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: A0A7S1TZY9_9STRA (Checkpoint protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZY9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 4.400e-60
Identity = 103/208 (49.52%), Postives = 139/208 (66.83%), Query Frame = 2 
Query:   86 MRFKAKIVQDKLLAFAGVIGAIEKIGTAC----VVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVIDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPRF 697
            MRFKA++ QD LL   GVI  +EK         ++HL+     L++  + +E   V+AEL  D LF EYRIES++ + IL EA  + L +A  SG+ +P C +KL KR GQPCL +ETRALE++V HDIPVKV+ A E E Y PP+V +P VQLELP  R LRTV+DR+K  D+++ +D DM G L  R +  +A+IKTF+ NL+PRF
Sbjct:    1 MRFKARLFQDMLLVVEGVIMCLEKATAGATPTVLLHLSPGGAKLALPTASTEEPQVFAELAADKLFAEYRIESQSDDCILLEAGLANLARAFRSGRAAPLCLLKLTKRRGQPCLCLETRALEVDVTHDIPVKVLKAAEIEAYAPPEVPAPSVQLELPASRQLRTVVDRLKPFDRYVSLDGDMHGSLTLRAQSGEASIKTFFPNLSPRF 208
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: A0A7S2SUZ2_9STRA (Checkpoint protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUZ2_9STRA)

HSP 1 Score: 201 bits (510), Expect = 6.460e-60
Identity = 102/205 (49.76%), Postives = 140/205 (68.29%), Query Frame = 2 
Query:   86 MRFKAKIVQDKLLAFAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDV--YAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVIDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPR 694
            MRFKAK+  +KL  F GV   +EKIG   VVHL++T + L ++    +G DV  ++ L Q  LFH++RIES++GN IL +     LL AL+S + +P CQ+KL KR GQ  L +ETRALE++V+HDIPV VM A+E +YY PP V  PQVQLELP  R+L+TVIDR+K I +++++  +M G L  R E     I+T++SNL PR
Sbjct:   44 MRFKAKLSNEKLGVFQGVAATLEKIGPLGVVHLSDTSIQLCIRNDSGQGDDVLAFSALEQKELFHDWRIESQSGNCILLQLTLQNLLDALHSARNAPQCQLKLTKRNGQAALCLETRALEVDVIHDIPVTVMRASEYQYYCPPDVPQPQVQLELPMSRNLKTVIDRLKNISRYIYLHGEMTGALTLRAETDSLVIQTYFSNLRPR 248
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: A0A4D9CSQ4_9STRA (Checkpoint protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSQ4_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.480e-56
Identity = 93/206 (45.15%), Postives = 141/206 (68.45%), Query Frame = 2 
Query:   86 MRFKAKIVQDKLLAFAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVIDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPRFGE 703
            M+F+A +    L    GV    E+ G +C+++L+E  +  +  + GS+ V  ++E+ Q+ +F EYRI S A N+ILFE   S L++A +S KT+   +IKLAKRAGQPC+ +E RAL++E++H++P++VM A + +YY+PP V  P+VQLELP  RS+RTV++R K +D+F FVD DM G L  R++     ++TFYSNL PR+ E
Sbjct:    1 MKFRAGLAAKDLGILNGVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRIKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLERFKIMDRFCFVDGDMSGALRLRLQNDRCHVQTFYSNLIPRYVE 206
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: A0A7R9U1B3_9STRA (Checkpoint protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1B3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 6.110e-43
Identity = 68/115 (59.13%), Postives = 90/115 (78.26%), Query Frame = 2 
Query:  353 SGKTSPTCQIKLAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVIDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPRF 697
            SG+T+P CQ+KL KR GQPCL +ETRALE++V HDIPVKV+ A+E E Y PP+V SP VQLEL + R LRT++DR+K  DK+L++D+ M G +  RV+  + T+KTF+ NLTPRF
Sbjct:    2 SGRTAPLCQLKLTKRGGQPCLCLETRALEVDVTHDIPVKVLKASEIEAYAPPEVPSPTVQLELMQSRQLRTIVDRLKVFDKYLYIDSSMAGNMTLRVQSGEVTVKTFFPNLTPRF 116
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: W7TDG5_9STRA (Checkpoint protein hus1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDG5_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.700e-40
Identity = 71/163 (43.56%), Postives = 113/163 (69.33%), Query Frame = 2 
Query:   86 MRFKAKIVQDKLLAFAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVID 574
            M+F+A +    L    GV    E+ G +C+++L+E  +  +  + GS+ V  ++E+ Q+ +F EYRI S A N+ILFE   S L++A +S KT+   ++KLAKRAGQPC+ +E RAL++E++H++P++VM A + +YY+PP V  P+VQLELP  RS+RTV++
Sbjct:    1 MKFRAGLAAKDLGNLNGVAQCFERFGPSCLIYLSERSIRFASPKLGSDEVRAFSEIQQEKVFSEYRIASLANNSILFEIGLSNLIKAFSSAKTAHFVRMKLAKRAGQPCICLEARALDMELLHEVPIRVMRAADIQYYMPPDVAMPRVQLELPYNRSMRTVLE 163
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: H3H3X3_PHYRM (Checkpoint protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=H3H3X3_PHYRM)

HSP 1 Score: 129 bits (325), Expect = 7.310e-33
Identity = 69/209 (33.01%), Postives = 121/209 (57.89%), Query Frame = 2 
Query:   86 MRFKAKIVQDKLLAFAGVIGAIEKIGTA------CVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVIDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPR 694
            MRF+  + +D L     V  +  ++G+       CV  LT   + ++++  G+E +  +A L    LFH+  ++SRA N I F  +     QAL SGK +    ++L KR G   L + TRA++I++V  IP++V+P +  E+Y  P V +PQ+ +E+P  R+LR+++DR+KA+ K + V+A   G L+ R++    T++T +++L  R
Sbjct:    1 MRFRGTLAKDALAVLLDVAQSFARLGSQSSAKANCVFTLTPETLSIALKSGGAEELQSFARLQVGRLFHDVVVQSRAENHIGFLCDVRHFQQALTSGKDASAVMLRLLKRDGSNFLCLRTRAVDIDIVQSIPIEVLPMSTVEHYREPSVPAPQIAIEMPPLRALRSIVDRLKAMHKTMTVEASKTGTLILRIDTHPLTLQTLFAHLRYR 209
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: A0A836CCR8_9STRA (Checkpoint protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCR8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 7.080e-31
Identity = 83/224 (37.05%), Postives = 122/224 (54.46%), Query Frame = 2 
Query:   86 MRFKAKIVQDKLLAFAGVIGAIEKIGTA-CVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQ-PCLSVETR--ALEIEVVHDIPVK-----VMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVIDRMKA-----------IDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPRF 697
            MRF+ KI +D L   + ++  +EK+ ++ CV+ L++  + ++V  +G + V  +AEL  + +F +Y +                                KLAKRAG  P L VE+    +E+ V  DIPVK     +M A EA+YY  P V   QVQLE+P QRS+R V+DRMK            IDK+L++DA+M GQLV R+E   ATIKTF++ L+PR+
Sbjct:    1 MRFRTKITKDSLFHLSSLVATLEKVSSSNCVILLSKDLMRITVVATGPDDVQAFAELQPEHVFEDYNM--------------------------------KLAKRAGGVPHLVVESHMSTMEMNVAQDIPVKASGRFLMNAEEADYYKAPVVPVSQVQLEMPVQRSMRAVVDRMKGKCSPPGKRCRCIDKYLYLDANMRGQLVVRLETDSATIKTFFTQLSPRY 192
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BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Match: A0A3M6VA71_9STRA (Checkpoint protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VA71_9STRA)

HSP 1 Score: 124 bits (311), Expect = 8.670e-31
Identity = 68/209 (32.54%), Postives = 117/209 (55.98%), Query Frame = 2 
Query:   86 MRFKAKIVQDKLLAFAGVIGAIEKIG------TACVVHLTETRVHLSVQESGSEGVDVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIKLAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQLELPRQRSLRTVIDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNLTPR 694
            MRF+  + +D L     V  +  ++G      T CV  LT   + ++++  G+E +  +A L    LFH+Y + S+A N I F  +     QAL+SGK +    ++L KR G   L + TRA++I++V  IP+ V+  +  E+Y  P V +PQ+ +E+P  R+LR+++DR+K + K L V     G L+ R++    T++T +++L  R
Sbjct:    1 MRFRGTLAKDALAVLLDVAQSFARLGSQNNAKTNCVFTLTPETLSIALKCGGTEELQSFARLQTRRLFHDYVVHSQANNHIYFLCDVRHFQQALSSGKDASGVMLRLLKRDGNNFLCLRTRAVDIDIVQSIPITVLAMSTVEHYKEPSVPAPQIAIEMPPLRALRSIVDRLKVMHKTLTVKISKMGTLILRIDTLPVTLQTLFAHLKYR 209
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9314.20908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE2_ECTSI1.340e-13798.54Checkpoint protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S3YAY1_HETAK4.920e-6952.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1TZY9_9STRA4.400e-6049.52Checkpoint protein n=2 Tax=Phaeomonas parva TaxID=... [more]
A0A7S2SUZ2_9STRA6.460e-6049.76Checkpoint protein n=1 Tax=Rhizochromulina marina ... [more]
A0A4D9CSQ4_9STRA1.480e-5645.15Checkpoint protein n=1 Tax=Nannochloropsis salina ... [more]
A0A7R9U1B3_9STRA6.110e-4359.13Checkpoint protein n=1 Tax=Pinguiococcus pyrenoido... [more]
W7TDG5_9STRA2.700e-4043.56Checkpoint protein hus1 n=1 Tax=Nannochloropsis ga... [more]
H3H3X3_PHYRM7.310e-3333.01Checkpoint protein n=23 Tax=Peronosporaceae TaxID=... [more]
A0A836CCR8_9STRA7.080e-3137.05Checkpoint protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A3M6VA71_9STRA8.670e-3132.54Checkpoint protein n=2 Tax=Peronospora effusa TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9314contigEcto-sp13_S_contig9314:2..3547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score397.5
Seed ortholog evalue3.8e-108
Seed eggNOG ortholog2880.D7FRE2
Preferred nameHUS1
Model size703
KEGG koko:K02870,ko:K10903,ko:K10996
KEGG Pathwayko03010,ko04218,map03010,map04218
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000785,GO:0000792,GO:0000793,GO:0000794,GO:0001932,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0007049,GO:0007093,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007338,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0009314,GO:0009411,GO:0009416,GO:0009566,GO:0009628,GO:0009653,GO:0009790,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010212,GO:0010389,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010948,GO:0010972,GO:0016043,GO:0016310,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030717,GO:0030720,GO:0030896,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033313,GO:0033314,GO:0033554,GO:0034641,GO:0035038,GO:0035861,GO:0036211,GO:0040020,GO:0042325,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044773,GO:0044774,GO:0044778,GO:0044818,GO:0045786,GO:0045835,GO:0045930,GO:0045934,GO:0046483,GO:0048468,GO:0048477,GO:0048519,GO:0048523,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051246,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070193,GO:0070194,GO:0070925,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090734,GO:0104004,GO:1901360,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421,GO:2000112,GO:2000113,GO:2000241,GO:2000242
Exons6
EggNOG free text desc.meiotic DNA integrity checkpoint
EggNOG OGsKOG3999@1,KOG3999@2759
Ec32 ortholog descriptionCell cycle checkpoint, Hus1
Ec32 orthologEc-21_002610.2
Cds size618
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9314.20908.1prot_Ecto-sp13_S_contig9314.20908.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9314 2..3462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464200.8184726-CDS-Ecto-sp13_S_contig9314:1..651681464200.8184726-CDS-Ecto-sp13_S_contig9314:1..65Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9314 2..65 -
1681464200.8314116-CDS-Ecto-sp13_S_contig9314:660..7731681464200.8314116-CDS-Ecto-sp13_S_contig9314:660..773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9314 661..773 -
1681464200.8410895-CDS-Ecto-sp13_S_contig9314:1236..13321681464200.8410895-CDS-Ecto-sp13_S_contig9314:1236..1332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9314 1237..1332 -
1681464200.8504412-CDS-Ecto-sp13_S_contig9314:1792..19631681464200.8504412-CDS-Ecto-sp13_S_contig9314:1792..1963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9314 1793..1963 -
1681464200.8614354-CDS-Ecto-sp13_S_contig9314:2797..29221681464200.8614354-CDS-Ecto-sp13_S_contig9314:2797..2922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9314 2798..2922 -
1681464200.870727-CDS-Ecto-sp13_S_contig9314:3413..34621681464200.870727-CDS-Ecto-sp13_S_contig9314:3413..3462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9314 3414..3462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464200.8795655-UTR-Ecto-sp13_S_contig9314:3462..35471681464200.8795655-UTR-Ecto-sp13_S_contig9314:3462..3547Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9314 3463..3547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9314.20908.1

>prot_Ecto-sp13_S_contig9314.20908.1 ID=prot_Ecto-sp13_S_contig9314.20908.1|Name=mRNA_Ecto-sp13_S_contig9314.20908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp
MRFKAKIVQDKLLAFAGVIGAIEKIGTACVVHLTETRVHLSVQESGSEGV
DVYAELIQDMLFHEYRIESRAGNAILFEANASLLLQALNSGKTSPTCQIK
LAKRAGQPCLSVETRALEIEVVHDIPVKVMPANEAEYYLPPKVHSPQVQL
ELPRQRSLRTVIDRMKAIDKFLFVDADMGGQLVFRVEKADATIKTFYSNL
TPRFGE
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mRNA from alignment at Ecto-sp13_S_contig9314:2..3547-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9314.20908.1 ID=mRNA_Ecto-sp13_S_contig9314.20908.1|Name=mRNA_Ecto-sp13_S_contig9314.20908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9314:2..3547- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTCTGCGTGAGGCAGCGAGAGATCAACTGCACCGTCGTGGGGAAGAA
GAGAAGAGGCTGCGCTACTGTAGAACGTGGGGAACATGAGATTCAAGGCC
AAGATCGTGCAGGATAAGCTGCTTGCATTTGCAGGTAAGCCCCACGCGGT
GATGTGGACGGGACACCACTAAATACCTTTATTTTGAAATCGCCGGCTTC
GCCACTGCTGTACGAGGAAATTCGGGCCTGTTTGCTCGTGTGCTCGTTTA
TTCCAACAGTTTCTCAGTCATGTGATAATGTATCCCGCTGGGCTGTGGGT
ATATCTCGAACGGGTAGTCCTTCTGTGTGTCTCCTTATTTTTGGGAATAA
AACTAATCTTCAGTACAAGTCGAAGTTGAACAAGGGTTTACAATATGTCA
ATCTCTTCACCCGGAACGTTCATGCTAGTTGTCGAAGAAACACAAACCGC
TGCCTCACGCTGCGTTTCTCACCGCGGTGCAATCTCCTCCTGCTGCTGCT
GCTGCTGCTGCTGCTGGGGCGGTGGCTACGGCTCACGGGATGGTGATGAC
GATGCTGACGTTGGTGACGGTAATGGCGTCGATCGCGGTCCTTGGTGTGT
GTGGATGGGACACTTCGTCGGACAGGGGTGATAGGGGCCATCGAGAAGAT
AGGGACCGCGTGCGTTGTGCACCTGACGGAGACAAGAGTACACCTCTCCG
TGCAGGAGAGCGGCTCGGAAGGGGTAGACGTCTACGCGGAGCTGATTCAG
GTGGGGTTGTCGTCGTCGTCGTAGCGGTTGTTGATGTGATGGTATTGTTG
TCTAGGCTCACGAGAGCATCAGGAGGAGTGCCTTCCCTGCAATCTCGTGA
GCCCTCGGCCGAGAGGAAATCAGTCTGCCGGGAGGGATTAGAAATTTATC
TATAGATCTTATGTGTCCACTTTTGCGTGTGCATTCCGTCATTTGCCCCA
ACCGGCTTTTAATGGTGGAGACTTTGTGTGGGAGATAGCCGTGTGTTGAC
GCCGCTGACTCTGTAGTAACTTGTTCTGCTTTCTCAGGGATGAGCTTGGG
GTGGTGTCGTCGGCTGATCTCGGTGTCGGCTATCCTTTGCATGCTGTCGC
CTTGTGTTATTCCACGTGCCCACCTGTGACCCGCTGTTTTCGCGTGACGG
GTCGTCGTCGCACGATTGGCTACAGGTTTCTTCTGCCGGTCGGTAGGCGT
CCGTCATTCCTTCGTGCTTGCTGCACGTTCGTTCCGCGGCCAGTGCTGCT
TCGTGTTTGTGTGTACGCCTGGCTTTCCGGCGGCGTGTTGTAGGCTTTAC
CTGTCCCTGGACCTTTGAGAAATATTTCCTTCGTCGACCCCTTGGACTGG
TGTATACATCGCGCACGTCCGTGGTCATTTGGGAGGAAGAAGGTGCAGCT
CCGCCAAGCAATGCGCCACCAGGAACATAGTAAGCACCGGCAAACAACAA
CCCCTTCTCGCCCACCCCGTACCTGAGCCCTGCGTCTTTTCATCTGGGTG
TGGTCTGTGCCGTAACGCCCCTGTGCGTTGCCGGTCGATGCGTTATTTTT
TTTTTATTCCGTGCATGAAAACGTTGCGTTGCAGGATATGTTGTTCCACG
AGTACCGCATTGAGAGCAGGGCGGGTAACGCGATCCTCTTCGAGGCGAAC
GCTTCTCTCCTGCTGCAGGCCCTCAACTCCGGGAAGACGTCGCCGACTTG
CCAGATCAAGCTCGCGAAAAGGGCCGGGCAGCCGTGCCTTTCGGTAGAGA
CGAGGGTGAGAGAGCAAACAAGACAGAACTAGATCACAAGGAGGAGGGCC
GGGGAGGTCATACAGGTGTGAGTGGACATGAGAGTGTGGTTTACGAAAGG
GCTGAGCAGCGGTTCCTTTCAAATCCATCTAGGGCGAAAAAAGCCATAAC
GGCGGAAGTCAAGACCTGTATTGACGTCATGCATTCTTGTTGCGCGGGTC
TGTGCATTGCGCTCTGTCGATTCCACAGGCTCCGACCGTGTGGTGCACGG
CCGAACGCTACGTGTACAACACCGTCTTTCCCGTTAGGCCCATATGGTGT
AGTTTGCCTTGCTACCCGTCGGCAGTAAATGAGTTTCGTGCTGTGACCGG
AAGGCTGGCCCGAAACCTCGCACCCCCCGCCTTTTTTTTCTGTCTGCGTG
CTACGTGTTTTGTGTCGCGGTGCAACTTTGATTTTGGTGTGCAATCGCAC
GTGCGAGGGGAGCAGGCGCTAGAGATCGAAGTCGTCCACGACATTCCCGT
GAAGGTCATGCCGGCAAATGAGGCAGAGTACTACCTGCCGCCGAAGGTCC
ATTCGCCGCAGGTGAGGAATACAGGAAGGACACTTGGTTTGCACCTACTG
TTTCGTAGTGGGTGGATGGCAGAAGACCAGAGCGTTTTTTTTTTGTTTGC
GTTTGCTCGGCTGAGTGCCGCAAAATTGTCGTCGCCTTTGTCATTGTTTG
CCCTTGTTCTTTGTGCGGCACTTCTCGCGTGGTGCGCCACTCGATCGCCG
GCTTGCCTCGTCCACTTTTTTTCTGTATGGTCCCGCGCTCGTATTCCTTG
TTCTTGTTGGTCGAAAAGTCTCGCCAGAGTTCATTTTTTCGCCAGCGCAG
TGCCAACCGCCGCCCATCATTGCCCACCAAAAGACATTGGTGCTGCAGCA
CCTGCTACTAACTGCGACTGCTGAGCCCGCTGCGCGTTGGTGATTCGGTT
CGTTCTTTTTCCAACCCTCTTTTCTCCCTCCTTAATTTCCGCTCCACCCC
GACCATCTACCCTGCCCGGCGAAGGTTCAACTAGAGCTTCCCCGCCAGCG
CTCTTTGCGCACCGTGATCGACCGCATGAAGGCCATAGACAAGTTCCTCT
TCGTGGACGCGGACATGGGCGGACAGTTGGTTTTCAGGTGATGTACGATC
TAATTACTTGGGGGCTTTTTTTTTTCTTGTTCACAGTGGCGCGGGTGGCT
TGCGAATTGAATCTTGGTAGGATGCGGCTCACCCTTCCGCGTGTGTCTCG
CCCCCAACGCCTCACGACGGGTACGCGACCGTCGTTACGGCATCGTACAA
GCGGAAATTCTACGAGGGGAATACTACGGCATGCGCCGTCGACCCATGGC
GGGGAGCGGCGGGCTAAGAGAGGGGACAGGGCGGGGAGCAGCGCGGGCGG
GGCGCGGACTCAATTTTTTGTCTTAAGCGTGCCGACCCCTCGCGCATCCC
GGCCAGCTACAACGGAGCACGGCGCCTGTTCCTAGTATCGGAGGGGGGCT
CGGGGCTTGCGGGGCGAGGGGGGGGGCGGGGGAGGAGGGAATTTGCTTCG
GCGCTTGCTTGAAATGAGCAGGCGGCCTTGTAGAGACGCCCGCCTCGTAA
GGACGCAAACCGATTAGTTTCTTGTATTTTGCATATTTCCGTCCAATTCT
TTGTTTTTTTCAAGCTCTACCACCACAATCCAAGTTGTAAAGTTTGCGTT
TCGTTGATTTTGTGTTCTCCCCCGTGGTGCAGGGTAGAGAAGGCCGACGC
CACGATCAAGACCTTCTATTCCAACCTTACCCCAAGATTCGGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9314:2..3547-

>mRNA_Ecto-sp13_S_contig9314.20908.1 ID=mRNA_Ecto-sp13_S_contig9314.20908.1|Name=mRNA_Ecto-sp13_S_contig9314.20908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9314:2..3547- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGATTCAAGGCCAAGATCGTGCAGGATAAGCTGCTTGCATTTGCAGG
GGTGATAGGGGCCATCGAGAAGATAGGGACCGCGTGCGTTGTGCACCTGA
CGGAGACAAGAGTACACCTCTCCGTGCAGGAGAGCGGCTCGGAAGGGGTA
GACGTCTACGCGGAGCTGATTCAGGATATGTTGTTCCACGAGTACCGCAT
TGAGAGCAGGGCGGGTAACGCGATCCTCTTCGAGGCGAACGCTTCTCTCC
TGCTGCAGGCCCTCAACTCCGGGAAGACGTCGCCGACTTGCCAGATCAAG
CTCGCGAAAAGGGCCGGGCAGCCGTGCCTTTCGGTAGAGACGAGGGCGCT
AGAGATCGAAGTCGTCCACGACATTCCCGTGAAGGTCATGCCGGCAAATG
AGGCAGAGTACTACCTGCCGCCGAAGGTCCATTCGCCGCAGGTTCAACTA
GAGCTTCCCCGCCAGCGCTCTTTGCGCACCGTGATCGACCGCATGAAGGC
CATAGACAAGTTCCTCTTCGTGGACGCGGACATGGGCGGACAGTTGGTTT
TCAGGGTAGAGAAGGCCGACGCCACGATCAAGACCTTCTATTCCAACCTT
ACCCCAAGATTCGGTGAG
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