mRNA_Ecto-sp13_S_contig931.20903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig931.20903.1
Unique NamemRNA_Ecto-sp13_S_contig931.20903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig931.20903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig931contigEcto-sp13_S_contig931:10696..11095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size400
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464200.5863338-UTR-Ecto-sp13_S_contig931:10695..107061681464200.5863338-UTR-Ecto-sp13_S_contig931:10695..10706Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig931 10696..10706 +
1681464200.6159856-UTR-Ecto-sp13_S_contig931:11051..110951681464200.6159856-UTR-Ecto-sp13_S_contig931:11051..11095Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig931 11052..11095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464200.6016302-CDS-Ecto-sp13_S_contig931:10706..110511681464200.6016302-CDS-Ecto-sp13_S_contig931:10706..11051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig931 10707..11051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig931.20903.1prot_Ecto-sp13_S_contig931.20903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig931 10707..11051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig931.20903.1

>prot_Ecto-sp13_S_contig931.20903.1 ID=prot_Ecto-sp13_S_contig931.20903.1|Name=mRNA_Ecto-sp13_S_contig931.20903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MRDYIARMVTYGRNCVACARTRHLGTQALGCPVPPFIGGRHSFSVLAPRG
ALHASTDRRGAILLLNLPAVSSRILKPYLLPSPIYKASTLDYSCPHVPRH
PLVEKFEGEDIFAR*
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mRNA from alignment at Ecto-sp13_S_contig931:10696..11095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig931.20903.1 ID=mRNA_Ecto-sp13_S_contig931.20903.1|Name=mRNA_Ecto-sp13_S_contig931.20903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig931:10696..11095+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCAGCATAAGATGAGAGACTACATAGCGCGCATGGTCACATATGGCCGC
AATTGTGTGGCGTGTGCTAGAACGCGACACCTTGGGACCCAAGCTCTAGG
TTGCCCGGTGCCTCCTTTCATCGGCGGGCGACATAGCTTTTCCGTGCTTG
CTCCTAGAGGCGCTCTCCACGCAAGCACAGATAGACGCGGCGCAATATTG
CTGTTGAACCTTCCTGCGGTATCCTCCCGCATCCTAAAACCCTACCTCTT
ACCTTCTCCCATCTACAAGGCATCCACACTAGACTATAGTTGTCCCCACG
TACCCCGGCACCCCCTTGTCGAGAAGTTCGAAGGAGAAGACATCTTCGCG
AGGTAAAACAGGCGGAAAAGGTGGGACCCAAAGTGACCCCAAAAGTCGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig931:10696..11095+

>mRNA_Ecto-sp13_S_contig931.20903.1 ID=mRNA_Ecto-sp13_S_contig931.20903.1|Name=mRNA_Ecto-sp13_S_contig931.20903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig931:10696..11095+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGACTACATAGCGCGCATGGTCACATATGGCCGCAATTGTGTGGC
GTGTGCTAGAACGCGACACCTTGGGACCCAAGCTCTAGGTTGCCCGGTGC
CTCCTTTCATCGGCGGGCGACATAGCTTTTCCGTGCTTGCTCCTAGAGGC
GCTCTCCACGCAAGCACAGATAGACGCGGCGCAATATTGCTGTTGAACCT
TCCTGCGGTATCCTCCCGCATCCTAAAACCCTACCTCTTACCTTCTCCCA
TCTACAAGGCATCCACACTAGACTATAGTTGTCCCCACGTACCCCGGCAC
CCCCTTGTCGAGAAGTTCGAAGGAGAAGACATCTTCGCGAGGTAA
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