mRNA_Ecto-sp13_S_contig9309.20901.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9309.20901.1
Unique NamemRNA_Ecto-sp13_S_contig9309.20901.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9309.20901.1 vs. uniprot
Match: D7G8N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8N6_ECTSI)

HSP 1 Score: 409 bits (1052), Expect = 6.720e-143
Identity = 202/215 (93.95%), Postives = 206/215 (95.81%), Query Frame = 1 
Query:  103 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQPKQPLPGAKELTPAEKEDAVAAAKKQADYNPEPWKNNGVWDNKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRHVVTHWTGLGAVATRDSVVSEGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTR 747
            MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRP   QPLPGAKELTP EK+ AVAAAKKQADYNPEPWKNNGVW+NKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPR+    WTGLGAVATRDSVV+EGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTR
Sbjct:    1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRP---QPLPGAKELTPTEKQAAVAAAKKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRNERNKWTGLGAVATRDSVVAEGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTR 212
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9309.20901.1 vs. uniprot
Match: A0A6H5LBR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR7_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 1.200e-104
Identity = 158/195 (81.03%), Postives = 160/195 (82.05%), Query Frame = 1 
Query:  103 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQ---------------------------------PKQPLPGAKELTPAEKEDAVAAAKKQADYNPEPWKNNGVWDNKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRHVVTH 588
            MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQ                                 PKQ LPGAKELTPAEK+ AVAAAKKQADYNPEPWKNNGVW+NKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRHVVTH
Sbjct:    1 MIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQQMTRSRRFLSPLVRSCAQSHRFINNCHTVDRSKPKQSLPGAKELTPAEKQAAVAAAKKQADYNPEPWKNNGVWENKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRHVVTH 195
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9309.20901.1 vs. uniprot
Match: A0A6H5J9N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N5_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.250e-45
Identity = 95/235 (40.43%), Postives = 128/235 (54.47%), Query Frame = 1 
Query:   46 PLYETRHYYVNVEKCLLDLMIRPVGVTYQSGIGKSTLIKSWSMRYTKTRRRPQPKQPLPGAKELTPAEKEDAVAAAKKQADYNPEPWKNNGVWDNKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNSLADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRHVVTHWTGLGAVATRDSVVSEGDNMSSLG-ADHADKKRWADLELPFADFLLNARLVLTR 747
            P+ E R YY++V+ CLL+ + R  G TY+ G+     IK WSM YTKTR              +  +           ++  + +       W+ +  SF+VNG+           LH Y + S+H KCH++GNSL  RI  D+ + +KL ESTWTTT LH  L  GT GPLT+PR     W G+G  A+  SVV+E  NM+ LG ADHA   RW +L+LP ADF+L AR VL R
Sbjct:   65 PMREERRYYIDVKTCLLEHVTRQPGSTYEEGVVFP--IKFWSMSYTKTR-------------SIGRSSXXXXXXXXXXRSGSDADTSHGKPKWEVRFQSFIVNGKEVTDPASQMSFLHVYLTCSSHAKCHVLGNSLVQRIYSDELLKDKLMESTWTTTWLHSALMEGTHGPLTYPRTTTNKWMGIGCPASHKSVVAETLNMTPLGGADHARTARWTELDLPLADFMLGARRVLLR 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9309.20901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G8N6_ECTSI6.720e-14393.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LBR7_9PHAE1.200e-10481.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9N5_9PHAE2.250e-4540.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9309contigEcto-sp13_S_contig9309:4801..6369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop1
Start0
Seed ortholog score70.1
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog7739.XP_002597731.1
Model size750
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2DAM2@1,2TJVI@2759,39GRE@33154,3C1VI@33208
Cds size750
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464200.4839349-CDS-Ecto-sp13_S_contig9309:4800..50041681464200.4839349-CDS-Ecto-sp13_S_contig9309:4800..5004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9309 4801..5004 +
1681464200.500213-CDS-Ecto-sp13_S_contig9309:5613..59971681464200.500213-CDS-Ecto-sp13_S_contig9309:5613..5997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9309 5614..5997 +
1681464200.5104177-CDS-Ecto-sp13_S_contig9309:6207..63691681464200.5104177-CDS-Ecto-sp13_S_contig9309:6207..6369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9309 6208..6369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9309.20901.1prot_Ecto-sp13_S_contig9309.20901.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9309 4801..6369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9309.20901.1

>prot_Ecto-sp13_S_contig9309.20901.1 ID=prot_Ecto-sp13_S_contig9309.20901.1|Name=mRNA_Ecto-sp13_S_contig9309.20901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
AAFKSLPGCTTNDGLPLYETRHYYVNVEKCLLDLMIRPVGVTYQSGIGKS
TLIKSWSMRYTKTRRRPQPKQPLPGAKELTPAEKEDAVAAAKKQADYNPE
PWKNNGVWDNKIVSFVVNGEAWHSRERMYGLLHHYHSGSAHTKCHMMGNS
LADRILVDDRVTEKLSESTWTTTALHHGLQYGTQGPLTHPRHVVTHWTGL
GAVATRDSVVSEGDNMSSLGADHADKKRWADLELPFADFLLNARLVLTR*
back to top

mRNA from alignment at Ecto-sp13_S_contig9309:4801..6369+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9309.20901.1 ID=mRNA_Ecto-sp13_S_contig9309.20901.1|Name=mRNA_Ecto-sp13_S_contig9309.20901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1569bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9309:4801..6369+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCGTTCAAGTCTCTCCCCGGTTGCACCACGAACGACGGCTTACCACT
GTACGAGACCCGGCACTACTACGTGAACGTCGAGAAGTGCCTCCTGGACC
TCATGATCCGCCCAGTCGGCGTAACCTACCAGTCCGGTATCGGCAAGAGC
ACCCTCATCAAGAGCTGGAGCATGCGCTACACCAAGACTCGTAGGCGCCC
TCAGGTAAGGTTGACTACCTACAGCACGTGCCTTCGCGGCGTGCTTTTAG
TTGTTTTCTCCTGCTTACATGTTCGGTCGTCGTTGACGTCGTATCTCCCT
CGGTCCCAAAACTAGCAAACAACTGCTCCTAATGAAGAGGAGTGGGGGGA
GGAAGGGGGGGGATCACCTATTTAGCTGTCGGGAACGATATCGACGGAAT
GCTGCGCGCCTTGCAGAAAACATCGAACTCGGATGTTTGTGTACTCGATG
CGTTGTGGGTATCGATATATAGTTGACTGTGATGCCGGCACCTGCTTCAA
GGAGATACCACCAACTCTCGGTTTCCGTGCGTGCGTACACGTTTGTTTAC
AGTCGCGTGCAACCATCCCCGCCGATGTATTCTCTCATGATTTTGGAATT
GGCGACAACACTTGTTACTTATATCGGACTGAACAACGTGTTTAACAGGC
GGCCTGGGCTCCCTCTCCCCCAAACACACGCTTTACCTCTTCACTACCAT
ATATCCGCACATAGCAAATGGCACGCTCACGACGTTGTCTGTCTCCCCTC
GTCCGCTCGTGCGCCCAATCTCATCGTTTCATCAACAACTGCCACACCGT
CGATCGATCAAAGCCCAAGCAGCCCCTCCCCGGCGCCAAGGAGCTCACCC
CCGCCGAGAAGGAGGATGCCGTTGCCGCTGCCAAGAAGCAGGCCGACTAC
AACCCCGAGCCCTGGAAGAACAACGGCGTGTGGGACAACAAGATCGTCTC
GTTCGTCGTGAACGGGGAGGCCTGGCACTCCCGGGAGCGCATGTATGGCT
TGCTGCACCACTACCACAGCGGGAGCGCGCACACGAAGTGCCACATGATG
GGCAACTCTCTCGCCGACCGCATCCTCGTGGACGATCGCGTCACGGAGAA
GCTGTCGGAGAGCACGTGGACCACCACCGCCTTGCACCACGGCCTCCAGT
ACGGCACCCAAGGGCCCCTGACCCACCCCAGGCATGTCGTGACCCACGTC
TGACGATGCAAGCGTACCTCCACTGGACTGCTTGGTGTCACTTGTGAATA
AAGGAAGAGTCGATTTTTTTCGTGTTTGCCGGTTATTTTTATCTCGTGAA
GTCACGATGTATTTTGCTCCACCGGGATTCCGGCTCAGGCAACAAGTTTA
TGTTGTCGCCCCCTTCCCCCCACCTCTTGCATTTTGAACAGGAACGAACG
CAACAAGTGGACTGGACTTGGCGCCGTCGCTACCCGCGACTCCGTGGTGT
CGGAGGGGGACAACATGAGCTCCCTCGGAGCCGATCACGCGGACAAGAAA
CGCTGGGCTGACCTAGAGCTTCCCTTCGCGGACTTCCTGCTCAACGCTCG
CCTGGTGCTGACCCGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9309:4801..6369+

>mRNA_Ecto-sp13_S_contig9309.20901.1 ID=mRNA_Ecto-sp13_S_contig9309.20901.1|Name=mRNA_Ecto-sp13_S_contig9309.20901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9309:4801..6369+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCGTTCAAGTCTCTCCCCGGTTGCACCACGAACGACGGCTTACCACT
GTACGAGACCCGGCACTACTACGTGAACGTCGAGAAGTGCCTCCTGGACC
TCATGATCCGCCCAGTCGGCGTAACCTACCAGTCCGGTATCGGCAAGAGC
ACCCTCATCAAGAGCTGGAGCATGCGCTACACCAAGACTCGTAGGCGCCC
TCAGCCCAAGCAGCCCCTCCCCGGCGCCAAGGAGCTCACCCCCGCCGAGA
AGGAGGATGCCGTTGCCGCTGCCAAGAAGCAGGCCGACTACAACCCCGAG
CCCTGGAAGAACAACGGCGTGTGGGACAACAAGATCGTCTCGTTCGTCGT
GAACGGGGAGGCCTGGCACTCCCGGGAGCGCATGTATGGCTTGCTGCACC
ACTACCACAGCGGGAGCGCGCACACGAAGTGCCACATGATGGGCAACTCT
CTCGCCGACCGCATCCTCGTGGACGATCGCGTCACGGAGAAGCTGTCGGA
GAGCACGTGGACCACCACCGCCTTGCACCACGGCCTCCAGTACGGCACCC
AAGGGCCCCTGACCCACCCCAGGCATGTCGTGACCCACTGGACTGGACTT
GGCGCCGTCGCTACCCGCGACTCCGTGGTGTCGGAGGGGGACAACATGAG
CTCCCTCGGAGCCGATCACGCGGACAAGAAACGCTGGGCTGACCTAGAGC
TTCCCTTCGCGGACTTCCTGCTCAACGCTCGCCTGGTGCTGACCCGGTGA
back to top