mRNA_Ecto-sp13_S_contig92892.20880.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig92892.20880.1
Unique NamemRNA_Ecto-sp13_S_contig92892.20880.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: A0A6H5KS38_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS38_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.870e-8
Identity = 22/27 (81.48%), Postives = 22/27 (81.48%), Query Frame = 1
Query:    1 AAENGHLEVLVWARENGCPWNERTCVN 81
            AA NGHLEVL WAR NGCPWNE TC N
Sbjct:  109 AAANGHLEVLQWARSNGCPWNEETCSN 135          
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: A0A7S1FU95_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU95_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.000e-6
Identity = 20/24 (83.33%), Postives = 20/24 (83.33%), Query Frame = 1
Query:    1 AAENGHLEVLVWARENGCPWNERT 72
            AAE GHLEVL WARE GCPWN RT
Sbjct:    7 AAEGGHLEVLQWARERGCPWNIRT 30          
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: A0A835YQA0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.860e-6
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 1
Query:    1 AAENGHLEVLVWARENGCPWNERTCVNAS 87
            AAE GHLE+L WAR +GC WNE+TC  A+
Sbjct:   87 AAEGGHLEILKWARADGCRWNEQTCSGAA 115          
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: A0A7S1SV63_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SV63_9CHLO)

HSP 1 Score: 47.4 bits (111), Expect = 2.030e-5
Identity = 17/28 (60.71%), Postives = 22/28 (78.57%), Query Frame = 1
Query:    4 AENGHLEVLVWARENGCPWNERTCVNAS 87
            A  GHLE+L WAR++GCPW+ R C NA+
Sbjct:    1 AAGGHLELLKWARDSGCPWSARLCSNAA 28          
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: A0A2H4UWE0_9VIRU (Ankyrin repeat domain-containing protein n=1 Tax=Bodo saltans virus TaxID=2024608 RepID=A0A2H4UWE0_9VIRU)

HSP 1 Score: 48.9 bits (115), Expect = 2.240e-5
Identity = 20/26 (76.92%), Postives = 21/26 (80.77%), Query Frame = 1
Query:    1 AAENGHLEVLVWARENGCPWNERTCV 78
            AA NGHLE L +A ENGCPWNE TCV
Sbjct:  154 AALNGHLECLKYAHENGCPWNEWTCV 179          
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: A0A285Q1W0_9VIRU (Uncharacterized protein n=1 Tax=Cedratvirus lausannensis TaxID=2023205 RepID=A0A285Q1W0_9VIRU)

HSP 1 Score: 45.4 bits (106), Expect = 2.330e-5
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 1
Query:   10 NGHLEVLVWARENGCPWNERTCVNASR 90
            +G+LE+L WAR NGCPWN+  C+ A +
Sbjct:    2 SGYLEILQWARANGCPWNKNKCLRACK 28          
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: A0A6G8MYC0_9VIRU (Ankyrin repeat-containing protein n=1 Tax=Cedratvirus kamchatka TaxID=2716914 RepID=A0A6G8MYC0_9VIRU)

HSP 1 Score: 48.5 bits (114), Expect = 2.730e-5
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 1
Query:    1 AAENGHLEVLVWARENGCPWNERT 72
            AA+NGHLE+L WAR NGCPWN+ T
Sbjct:   90 AAKNGHLEILKWARANGCPWNKWT 113          
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: S4VSK0_9VIRU (Ankyrin repeat domain containing protein n=1 Tax=Pandoravirus salinus TaxID=1349410 RepID=S4VSK0_9VIRU)

HSP 1 Score: 47.4 bits (111), Expect = 3.160e-5
Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:    1 AAENGHLEVLVWARENGCPWNERTC 75
            AA  GHL+VL WAR NGC W+ERTC
Sbjct:    5 AAGGGHLDVLQWARANGCEWDERTC 29          
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: A0A835YTQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTQ8_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.850e-5
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 1
Query:   13 GHLEVLVWARENGCPWNERTCVNASRG 93
            GHLEVL WAR NGCPW++ TC  A+ G
Sbjct:  179 GHLEVLQWARANGCPWDKSTCTLAASG 205          
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Match: S4VVM5_9VIRU (Ankyrin repeat domain containing protein n=2 Tax=Pandoravirus TaxID=2060084 RepID=S4VVM5_9VIRU)

HSP 1 Score: 47.8 bits (112), Expect = 5.860e-5
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 1
Query:    4 AENGHLEVLVWARENGCPWNERTCVNASRG 93
            A  GHL+VL WAR+NGCPW+  TC  A+ G
Sbjct:   71 AAAGHLDVLKWARQNGCPWDAWTCAEAAYG 100          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92892.20880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KS38_9PHAE5.870e-881.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1FU95_9STRA6.000e-683.33Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A835YQA0_9STRA8.860e-665.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1SV63_9CHLO2.030e-560.71Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2H4UWE0_9VIRU2.240e-576.92Ankyrin repeat domain-containing protein n=1 Tax=B... [more]
A0A285Q1W0_9VIRU2.330e-555.56Uncharacterized protein n=1 Tax=Cedratvirus lausan... [more]
A0A6G8MYC0_9VIRU2.730e-575.00Ankyrin repeat-containing protein n=1 Tax=Cedratvi... [more]
S4VSK0_9VIRU3.160e-572.00Ankyrin repeat domain containing protein n=1 Tax=P... [more]
A0A835YTQ8_9STRA3.850e-566.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
S4VVM5_9VIRU5.860e-560.00Ankyrin repeat domain containing protein n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92892contigEcto-sp13_S_contig92892:397..537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size141
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464198.7591076-CDS-Ecto-sp13_S_contig92892:396..5371681464198.7591076-CDS-Ecto-sp13_S_contig92892:396..537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig92892 397..537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92892.20880.1prot_Ecto-sp13_S_contig92892.20880.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig92892 397..537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig92892.20880.1

>prot_Ecto-sp13_S_contig92892.20880.1 ID=prot_Ecto-sp13_S_contig92892.20880.1|Name=mRNA_Ecto-sp13_S_contig92892.20880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
AAENGHLEVLVWARENGCPWNERTCVNASRGGHDDVLRWAIANGCA*
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mRNA from alignment at Ecto-sp13_S_contig92892:397..537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig92892.20880.1 ID=mRNA_Ecto-sp13_S_contig92892.20880.1|Name=mRNA_Ecto-sp13_S_contig92892.20880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92892:397..537- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGAGAACGGTCACCTGGAGGTGTTGGTGTGGGCGAGGGAGAACGG GTGTCCCTGGAACGAGAGGACCTGCGTCAACGCCTCGCGGGGGGGACACG ACGACGTGCTTCGATGGGCCATTGCCAACGGCTGTGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig92892:397..537-

>mRNA_Ecto-sp13_S_contig92892.20880.1 ID=mRNA_Ecto-sp13_S_contig92892.20880.1|Name=mRNA_Ecto-sp13_S_contig92892.20880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92892:397..537- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGCGGAGAACGGTCACCTGGAGGTGTTGGTGTGGGCGAGGGAGAACGG
GTGTCCCTGGAACGAGAGGACCTGCGTCAACGCCTCGCGGGGGGGACACG
ACGACGTGCTTCGATGGGCCATTGCCAACGGCTGTGCGTGA
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