mRNA_Ecto-sp13_S_contig9274.20866.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: D8LB36_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB36_ECTSI) HSP 1 Score: 171 bits (432), Expect = 2.270e-44 Identity = 136/208 (65.38%), Postives = 146/208 (70.19%), Query Frame = 1
Query: 1 MSPLTFAAEKGSSSVVKILLKHGANVSIKENCGSTALHLSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLLLAKADPQFQQNTSRNLFVPLDILATRGDSDAVRELIRYVGIEGCGGPSRGENALVTAAQDRHVDMV--LLTDARVVDTGGALIAAADYG 618
MSPL FAAEKGS SVVKILLK+GANVSIKEN G TALHLS+Q XXXXXXXXXXXXXXXXXXXXXXXXXXX KVLL AK DPQ QQNTS NLFVPL++LATRGDSDAVREL R+V I+GCGGPSRG NALVTAA+D+HVD++ LLTDA VVDTGGALI AA YG
Sbjct: 1 MSPLMFAAEKGSCSVVKILLKYGANVSIKENGGFTALHLSAQHGHPALTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXPLLIASTQGYKDAS-----------------------KVLLRAKVDPQLQQNTSGNLFVPLNMLATRGDSDAVRELFRHVDIDGCGGPSRGVNALVTAARDKHVDIMVLLLTDAGVVDTGGALITAAHYG 185
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: A0A6H5KJ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ94_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.130e-26 Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 2
Query: 839 MAYTPIETAMRRIHWKKI*GKEDVSDEQLRSVEAIRGLLLHVEAVRAISWLWPGTNPSVAHLAAEGTGKTSRARPPLM 1072
+ YTP+E AMRRI KK+ GKED++DEQLRSVEAIR LLL VEA+RAI+ LWPG NPSVAH AAEGTG+TSRARP LM
Sbjct: 137 LVYTPMEIAMRRILRKKVEGKEDINDEQLRSVEAIRRLLLQVEAIRAIACLWPGNNPSVAHAAAEGTGRTSRARPRLM 214
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 119 bits (297), Expect = 4.370e-25 Identity = 76/176 (43.18%), Postives = 104/176 (59.09%), Query Frame = 2
Query: 617 GGVVSVKHLLQRQK-QTTAERKAYVNAPGLFGATPLLWSIQACRPCSSRIARLLVDAGADTTSTVMMGDVQTFGLMAYTPIETAMRRIHWK-KI*GKEDVSDEQLRSVEAIRGLLLHVEAVRAISWLWPGTNPSVAHLAAEGTGKTSRARPPLMLPLLMTRTKAH--RLLLAPLLR 1132
GG +K LL++ + + T + AYVN G TPLLW IQ RP R+ RLLV+AGADTTS V + + ++ TP+ M + K K+ G+ S EQL +EAIR LLL VEAV A+SWLWP ++ AA GT +T+ + LP+L+TR +A ++ LA LLR
Sbjct: 258 GGETPLKFLLEQARARKTMDEAAYVNTRDRGGVTPLLWGIQHYRP---RVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLR 430
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 111 bits (278), Expect = 4.210e-24 Identity = 77/177 (43.50%), Postives = 101/177 (57.06%), Query Frame = 2
Query: 617 GGVVSVKHLL-QRQKQTTAERKAYVNAPGLFGATPLLWSIQACRPCSSRIARLLVDAGADTTSTVMMGDVQTFGLMAY--TPIETAMRRIHWKKI*GKEDVSDEQLRSVEAIRGLLLHVEAVRAISWLWPGTNPSVAHLAAEGTGKTSRARPPLML--PLLMTRTKAHRLLLAPLLR 1132
G SV+ LL QR+K++ AY N+ G TPL SI+ C + RI RLLVDAGADTTSTV + ++ G + Y TP+ + K + GK ++EQL ++AIR LLL V+AV A+SWLWP PS+ H G R RPPL L P+L R K + +A LLR
Sbjct: 31 GREASVQFLLRQRRKESEMSVHAYANSSDGSGMTPLSCSIEWCSSGNPRIVRLLVDAGADTTSTVRVTNLN--GGVEYNDTPLAVTTSLLREKVVDGKP-ATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPR-RPPLSLTLPILKRRAKTCHVFVATLLR 203
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 103 bits (256), Expect = 9.780e-20 Identity = 67/176 (38.07%), Postives = 100/176 (56.82%), Query Frame = 2
Query: 617 GGVVSVKHLLQRQK-QTTAERKAYVNAPGLFGATPLLWSIQACRPCSSRIARLLVDAGADTTSTVMMGDVQTFGLMAYTPIETAMRRIHWKKI*GKEDVSDEQLRSVEAIRGLLLHVEAVRAISWLWPGTNPSVAHLAAEGTGKT---SRARPPLMLPLLMTRTKAHRLLLAPLLR 1132
GG +K LL++ + + + +R AY+N G T LL IQ CRP R+ +LLV+AGADTTS V++ + TP+ M + + + ++ E+ +E IR LLL EAV A+SWLWP P++ H A+GTG+T S A P ++ ++ RT+ + LLA LLR
Sbjct: 258 GGEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRCRP---RVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGR---SAKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLR 427
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 1.580e-16 Identity = 67/174 (38.51%), Postives = 93/174 (53.45%), Query Frame = 2
Query: 617 GGVVSVKHLLQRQKQT--TAERKAYVNAPGLFGATPLLWSIQACRPCSSRIARLLVDAGADTTSTVMMGDVQTFGLMAYTPIETAMRRIHWKKI*GKEDVSDEQLRSVEAIRGLLLHVEAVRAISWLWPGTNPSVAHLAAEGTGKTSRARPPLMLPLLMTRTKAHRLLLAPLLR 1132
G SVK LL+ + + AY+NA + G TPL+ Q C + RI R+LVDAGADTTS V + +++ + TP+ R+ K + + + E L+ +EAI LLL V+AV A+SWLWP P + A E + LMLP+L RTK L+A LLR
Sbjct: 350 GHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGR-ATETDPEPPLPALKLMLPILKRRTKRRCGLVATLLR 522
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 3.020e-16 Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 2
Query: 629 SVKHLLQRQKQTTAERKAYVNAP-GLFGATPLLWSIQACRPCSSRIARLLVDAGADTTSTVMMGDVQTFGLMAYTPIETAMRRIHWKKI*GKEDVSDEQLRSVEAIRGLLLHVEAVRAISWLWPGTNPSVAHL--AAEGTGKTSRARPPL 1069
SVK LLQ Q YVN FG TPL+ +I+AC S RIAR L+D GADT STV++ + TP+ A R + K+ GK + ++EQLRS++AI LL +EAV A+SWLW ++ + H AA K + A P L
Sbjct: 256 SVKFLLQHQ---AGGGTWYVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGK-NATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMKPTTAGPTL 401
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 7.390e-16 Identity = 76/183 (41.53%), Postives = 98/183 (53.55%), Query Frame = 2
Query: 617 GGVVSVKHLLQRQKQTTAERKAYVNAP-GLFGATPLLWSIQAC--RPCSSRIARLLVDAGADTTSTVMMGDVQTFGL-MAYTPIETAMRRIHWKKI*GKEDVSDEQLRSVEAIRGLLLHVEAVRAISWLWPGTNPSVAHLAAEGTGKT-----SRARPPL--MLPLLMTRTKAHRLLLAPLLR 1132
G + VK LLQ+Q T +E+ AYV+ P G TPL+ +I + CS ++ RLLVDAGADTTS V +Q L + TP+ A + K I ++ + DE LR +E IR LLL VEAV A SWLW P V L A GT T S P L +LP+L R + + A L R
Sbjct: 255 GHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRF-TIQPGTLPVVCTPLSLATEALRIK-IAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVG-LPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCR 434
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 4.540e-15 Identity = 61/153 (39.87%), Postives = 87/153 (56.86%), Query Frame = 2
Query: 629 SVKHLLQRQKQTTAERKAYVNAP-GLFGATPLLWSIQACRPCSSRIARLLVDAGADTTSTVMMGDVQTFGLMAYTPIETAMRRIHWKKI*GKEDVSDEQLRSVEAIRGLLLHVEAVRAISWLWPGTNPSVAHLAAEGTGKTSRARPPLMLPLL 1084
SVK LLQ Q A YVN FG TPL+ +I+AC S RIAR L+DA ADT STV++ + TP+ A + K+ G+++ ++EQLRS++AI LL V+AV A+SWLW ++ ++ + SR +P + PLL
Sbjct: 246 SVKFLLQHQAGGGAW---YVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDAEADTKSTVLVTKSGQWTTSRDTPLGFATHSLRQNKV-GRKNATEEQLRSLKAIHRLLSQVDAVHAVSWLWRSSDTRNSYAVGAAS---SRMKPTIAGPLL 391
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 8.680e-15 Identity = 67/170 (39.41%), Postives = 91/170 (53.53%), Query Frame = 2
Query: 617 GGVVSVKHLLQRQKQTTAERKAYVNAPGLFGATPLLWSIQAC----RPCSSRIARLLVDAGADTTSTVMMGDVQTFGLMAYTPIETAMRRIHWKKI*GKEDVSDEQLRSVEAIRGLLLHVEAVRAISWLWPGTNPSVAHL---AAEGTGKTSRARPPL--MLPLLMTRTK 1099
G SVK+LLQ + AYVN G TPLL SI C + R+ARLLV+AGADTT+ + + L + TP++ + + KK+ G +S ++L +E IR LLL VEAV A SWLWP ++ AAE T T+ A P L +LP+L R +
Sbjct: 241 GREASVKYLLQNHAKHYGPG-AYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTY-ISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRAR 408 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9274.20866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9274.20866.1 >prot_Ecto-sp13_S_contig9274.20866.1 ID=prot_Ecto-sp13_S_contig9274.20866.1|Name=mRNA_Ecto-sp13_S_contig9274.20866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp MSPLTFAAEKGSSSVVKILLKHGANVSIKENCGSTALHLSSQHGHPTVTRback to top mRNA from alignment at Ecto-sp13_S_contig9274:3354..5196+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9274.20866.1 ID=mRNA_Ecto-sp13_S_contig9274.20866.1|Name=mRNA_Ecto-sp13_S_contig9274.20866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9274:3354..5196+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9274:3354..5196+ >mRNA_Ecto-sp13_S_contig9274.20866.1 ID=mRNA_Ecto-sp13_S_contig9274.20866.1|Name=mRNA_Ecto-sp13_S_contig9274.20866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9274:3354..5196+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |