mRNA_Ecto-sp13_S_contig9273.20865.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9273.20865.1
Unique NamemRNA_Ecto-sp13_S_contig9273.20865.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9273.20865.1 vs. uniprot
Match: D7G874_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G874_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 4.750e-56
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 2 
Query:  854 RSYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCSTAGGRDNVHMLETRNVVEGGLSHTQEIRLHNLTTGEDCVTNRVWTRVPMTEEHHAAVGPL 1156
            RSYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCSTAGGRDNVHMLETR+VVEGGL+HTQEIRLHNLTTGEDCVTNRVW RVPMTEEH AA+GPL
Sbjct:  183 RSYTLDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCSTAGGRDNVHMLETRHVVEGGLAHTQEIRLHNLTTGEDCVTNRVWMRVPMTEEHQAALGPL 283
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BLAST of mRNA_Ecto-sp13_S_contig9273.20865.1 vs. uniprot
Match: D7G875_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G875_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 5.370e-42
Identity = 81/130 (62.31%), Postives = 104/130 (80.00%), Query Frame = 2 
Query:  839 RLTCSRSYT----LDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSANCST-AGGRDNVHMLETRNVVEGGLSHTQEIRLHNLTTGEDCVTNRVWTRVPMTEEHHAAVGPL*MGWPTGGSSSSATVARDS 1213
            R TC+ ++T    LDEEKVKY+ + RTR+SE++S+P SGPTG+VRSAN +  +GGRD+VHMLE+R+++EG LSHTQEIRLHNLTTGE CVTNRVWTRVPMT+EH A +G L +      SSSSA + R++
Sbjct:   67 RRTCANNFTESFKLDEEKVKYDGIVRTRISELVSMPSSGPTGYVRSANSTAISGGRDDVHMLESRHIMEGSLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQATIGLLLLAEEP--SSSSARILREN 194
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BLAST of mRNA_Ecto-sp13_S_contig9273.20865.1 vs. uniprot
Match: A0A6H5JV86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV86_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 5.400e-39
Identity = 78/128 (60.94%), Postives = 101/128 (78.91%), Query Frame = 2 
Query:  845 TCSRSYT----LDEEKVKYNEVTRTRVSEVLSVPCSGPTGFVRSA-NCSTAGGRDNVHMLETRNVVEGGLSHTQEIRLHNLTTGEDCVTNRVWTRVPMTEEHHAAVGPL*MGWPTGGSSSSATVARDS 1213
            TC+ ++T    L EEKVK++ + RTR+SEV+S+P S PTG+VRSA + + +GGRD+VHMLE+R+++EGGLSHTQEIRLHNLTTGE CVTNRVWTRVPMT+EH A +G L +      SSSSA + R +
Sbjct:   29 TCANNFTESFKLGEEKVKHDGILRTRISEVVSMPSSRPTGYVRSARSTAVSGGRDDVHMLESRHIMEGGLSHTQEIRLHNLTTGEHCVTNRVWTRVPMTDEHQAMMGLLLLAEEP--SSSSARILRQN 154
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BLAST of mRNA_Ecto-sp13_S_contig9273.20865.1 vs. uniprot
Match: D7FQR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR1_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-5
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 2 
Query:  860 YTLDEEKVKYNEVTRTRVSEVLSVPCSGPT-GFVRSANCSTAGGRDNVHMLETRNVVEGGLSHTQEIRLHNLTTGEDCVTNRVWTRVPMT 1126
            Y LD+EK+            ++S+P  G   G V + +  TA G+  +H++ETR +++ G  H QE+ L NLTTG  CVT R W RV +T
Sbjct:   90 YELDKEKITDGRSGPKHC--MVSLPNPGCLDGLVLTTSMPTAQGQ--MHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVT 175
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BLAST of mRNA_Ecto-sp13_S_contig9273.20865.1 vs. uniprot
Match: A0A6H5JWZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.710e-5
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 2 
Query:  950 GFVRSANCSTAGGRDNVHMLETRNVVEGGLSHTQEIRLHNLTTGEDCVTNRVWTRVPMT 1126
            G V + +  TA G+  +H++ETR +++ G  H QE+ L NLTTG  CVT R W RV +T
Sbjct:   75 GLVLTTSMPTAQGQ--MHLVETRQLLDKGHVHAQELHLSNLTTGARCVTKRTWVRVAVT 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9273.20865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G874_ECTSI4.750e-5695.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G875_ECTSI5.370e-4262.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV86_9PHAE5.400e-3960.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQR1_ECTSI1.150e-538.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWZ5_9PHAE1.710e-545.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9273contigEcto-sp13_S_contig9273:4066..6421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1897
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_001220.1
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.9598968-UTR-Ecto-sp13_S_contig9273:4065..45161681464197.9598968-UTR-Ecto-sp13_S_contig9273:4065..4516Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9273 4066..4516 +
1681464197.9940577-UTR-Ecto-sp13_S_contig9273:5683..64211681464197.9940577-UTR-Ecto-sp13_S_contig9273:5683..6421Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9273 5684..6421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.9715712-CDS-Ecto-sp13_S_contig9273:4516..51161681464197.9715712-CDS-Ecto-sp13_S_contig9273:4516..5116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9273 4517..5116 +
1681464197.983223-CDS-Ecto-sp13_S_contig9273:5575..56831681464197.983223-CDS-Ecto-sp13_S_contig9273:5575..5683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9273 5576..5683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9273.20865.1prot_Ecto-sp13_S_contig9273.20865.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9273 4517..5683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9273.20865.1

>prot_Ecto-sp13_S_contig9273.20865.1 ID=prot_Ecto-sp13_S_contig9273.20865.1|Name=mRNA_Ecto-sp13_S_contig9273.20865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp
MTETAERCNRFQPTPHKRGGRPSLGCGRTRECLYQRGRVLSFGILESPRS
PCQGERKHSMPASEMEGAQEVLYTTALTRIVAQSTYIKHPCQTKAASRYE
QDSECNLRPLSPPSKVLRVLTLTLTPVALRLTCSRSYTLDEEKVKYNEVT
RTRVSEVLSVPCSGPTGFVRSANCSTAGGRDNVHMLETRNVVEGGLSHTQ
EIRLHNLTTGEDCVTNRVWTRVPMTEEHHAAVGPL*
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mRNA from alignment at Ecto-sp13_S_contig9273:4066..6421+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9273.20865.1 ID=mRNA_Ecto-sp13_S_contig9273.20865.1|Name=mRNA_Ecto-sp13_S_contig9273.20865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2356bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9273:4066..6421+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGAGGTGCGCCCGCTGTTCGACGTTACGGCTGCCGGTTGCGTTGTTTC
GCGCCTTGACTCCTGGCTGGTAACAGCAGTACTACTCTCTGAAACCACCT
CACTCGCCCCCGTGTTATTTTGTAGATGCCTTGCGCTTGAGTGACCGCTC
TTGCAGTCTGCGTCATTTGAGGTCCAGTGTGTACACCCTGTGGTCGTTAA
CGGACCTCGTCGTGGCACGTACACCGATGTGCACTTAGTCAAGCCCCACA
GGATAACTCTGGTTGGTGTGGCCTTTCTCGCTGCCGGTCCCGCCCACAAT
CCAGGAAAACAAGAGGCTTCTCTTTCTTTCATTCCTCTCCCGGCACCCTC
GTGTGTAGAGAGCGGGGCGGCGGAGACGTGTGTAACCCTAACCTGCCATT
GTTTCCGTTCCGAAGGAGGAAAGCGCGTTCTGAAGAACTATTCCACCGGT
GATGACTGAGACGGCAGAACGGTGCAATCGTTTTCAGCCTACACCGCACA
AAAGGGGCGGGCGTCCTTCGCTCGGATGTGGGCGGACGCGTGAATGCTTG
TATCAGAGGGGTCGCGTTTTGTCGTTTGGGATTTTGGAGTCGCCCCGCTC
GCCTTGTCAAGGGGAGCGGAAACACAGCATGCCTGCTTCAGAAATGGAAG
GTGCGCAGGAGGTCTTGTACACCACAGCACTCACTCGAATCGTCGCACAA
AGTACATACATCAAGCACCCATGCCAGACAAAGGCCGCATCGCGTTATGA
ACAAGACTCCGAATGCAATCTCCGTCCCCTCTCCCCGCCCTCGAAAGTCC
TACGAGTACTCACCCTCACCCTTACCCCTGTCGCTTTACGCTTGACTTGT
TCGAGAAGCTACACGCTCGACGAGGAAAAGGTCAAGTACAACGAAGTCAC
CCGTACTAGGGTGTCCGAGGTGCTTTCCGTCCCGTGTTCAGGTCCCACGG
GGTTCGTCCGTTCCGCCAATTGTAGCACCGCCGGCGGAAGGGACAACGTG
CACATGCTCGAGACGCGAAACGTCGTGGAAGGGGGTCTTTCTCACACCCA
GGTTAGTTTGTTGAGGGTGCGGGACACCTTCCTCGTTGCTTCAGCTGTTT
TGGGGGTGGCCAGGAGGTTTTCCACTTTCCGCGTGGCTGAGCGCACTGTG
GCGTTACTGGGCCTCTACACCATTGATCTCACCACGTTTTTTGCCGTTTG
GAAATCGGCCTTCGCTACACTTGACTCATTCATGATCTCGCATGTTTTGA
GTGCGAAAATATCTTCGTACTCGTCTCGCTGTAGGTGGATTTAAGTATCG
ATAACGTTCTCAGACGCGAGGAAGGGTCTCGGAACTGATTTCGACGGAGG
GCAAGATACACGAAGAAGGCAGGGTTGGTTTTTGACCAGACCTGATTTTT
CGACGGTAAAACGCGATTCTGGCACCACGACACGCCACCAACCACCACCC
GAGCGACATTTACGTCACCACTAGGCCACGAACCCCGTGTACAAACCGCC
CTTCAACCAGGAGATACGCCTCCACAATCTCACCACCGGAGAGGACTGTG
TCACCAACAGAGTCTGGACGCGGGTACCGATGACCGAAGAGCACCATGCG
GCCGTTGGCCCGCTTTAGATGGGATGGCCGACGGGGGGAAGCAGCAGTAG
CGCGACAGTCGCACGGGACAGCAAGTAGAGTGTGAGAGACAGACGACGTC
GTCATGTACAAAGGGGAGAGAGAGGTACAATAGCAAGAGTCAAGCCCCTC
GAGTTAACAACACAACCAACCGTGTGAGATGTCTGCCGTATCCGTCACAG
TTATGTGTCTTATGGCTACGGTTGTACTACGAATTTTGTGGTGATGAATG
GGGACCCGCGAGGCTTGCGTCCGCTTCGAGGTTCTGTTGAGCACAGCAGC
AATAGAAGATCTGCTTGAATATCTTTGTACTTGTATAGATCGATGAATCC
ACAAAATATATAGATCAATTGAATAAAATGAGAGTTTGTATATATTTTTT
CATTGCCAGTCGTTCAGAGCCATAGCACCAAGTTTTTTTTTGTTCTCAGC
CCGCCGGTAGGGTGTCGATGGGTGTAAAGGAGGACGGGGTGCGGCCTTAC
CGCTGTTTCGGTGAATTGAAAGTCGCTATTTTTAATGTATGTTGGTCGTG
CGGCTGGGGGTGGGAAAGCCGCCTTTACGATTGGGCACGGCAACAGCTAA
ATGGTATGTTCTTTGGCGTAGACAGAATTAGTAAGTGTGTAGGATCCTCG
ACTGTGTTTGTGTGTTCTCAACCCTCTTTTTCTTGTGTTTTCCTTGTTGT
CGTGTTTATGTTTCAGCCTTCACTTTTTTCTTAGTGTTTGTTCGGCCAGC
ACCGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9273:4066..6421+

>mRNA_Ecto-sp13_S_contig9273.20865.1 ID=mRNA_Ecto-sp13_S_contig9273.20865.1|Name=mRNA_Ecto-sp13_S_contig9273.20865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9273:4066..6421+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGAGACGGCAGAACGGTGCAATCGTTTTCAGCCTACACCGCACAA
AAGGGGCGGGCGTCCTTCGCTCGGATGTGGGCGGACGCGTGAATGCTTGT
ATCAGAGGGGTCGCGTTTTGTCGTTTGGGATTTTGGAGTCGCCCCGCTCG
CCTTGTCAAGGGGAGCGGAAACACAGCATGCCTGCTTCAGAAATGGAAGG
TGCGCAGGAGGTCTTGTACACCACAGCACTCACTCGAATCGTCGCACAAA
GTACATACATCAAGCACCCATGCCAGACAAAGGCCGCATCGCGTTATGAA
CAAGACTCCGAATGCAATCTCCGTCCCCTCTCCCCGCCCTCGAAAGTCCT
ACGAGTACTCACCCTCACCCTTACCCCTGTCGCTTTACGCTTGACTTGTT
CGAGAAGCTACACGCTCGACGAGGAAAAGGTCAAGTACAACGAAGTCACC
CGTACTAGGGTGTCCGAGGTGCTTTCCGTCCCGTGTTCAGGTCCCACGGG
GTTCGTCCGTTCCGCCAATTGTAGCACCGCCGGCGGAAGGGACAACGTGC
ACATGCTCGAGACGCGAAACGTCGTGGAAGGGGGTCTTTCTCACACCCAG
GAGATACGCCTCCACAATCTCACCACCGGAGAGGACTGTGTCACCAACAG
AGTCTGGACGCGGGTACCGATGACCGAAGAGCACCATGCGGCCGTTGGCC
CGCTTTAG
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