mRNA_Ecto-sp13_S_contig9270.20862.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9270.20862.1
Unique NamemRNA_Ecto-sp13_S_contig9270.20862.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9270.20862.1 vs. uniprot
Match: A0A6H5L6K6_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6K6_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 1.010e-68
Identity = 150/196 (76.53%), Postives = 158/196 (80.61%), Query Frame = 1 
Query:    4 NPARWAGAIPLPGLVAAATGXXXXXXXAVASVCRPLSPGRLGGNNGDDYSDNKSDGSS------------YGSGRFDDDDNTRNRSSSRGRPMGAAARPAAAPGPRTTSWEDTEEDSSCDGEAGEECDSATPGSSATAPAWMGGSTAALAPGGPMNAKGVPTNGTPGVATRRESGLQRHESGLESALSENERRGTA 555
            NPARWAGAIPLPGLVAAATG XXXXXX   SVCRPLSPGR GGNN +D SD+KSDG+               SGR D+DD TR+RSSSRGRP+GA ARPAAAPGPR TSWEDTEEDSS DG  GEECD  TPGS A APAWMGGSTAALAP GPMNAKGVPTNGT GVATRRE+G QR ESGLESALSE+ER GTA
Sbjct: 1981 NPARWAGAIPLPGLVAAATGGXXXXXXXX-SVCRPLSPGRPGGNNSNDDSDDKSDGNDDXXXXXXXXXXXXXSGRLDEDD-TRSRSSSRGRPLGAVARPAAAPGPRRTSWEDTEEDSSTDGAEGEECDPTTPGSPAPAPAWMGGSTAALAPRGPMNAKGVPTNGTRGVATRRENGFQRRESGLESALSEDERGGTA 2174
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BLAST of mRNA_Ecto-sp13_S_contig9270.20862.1 vs. uniprot
Match: D7FU64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU64_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.300e-29
Identity = 68/84 (80.95%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  307 EEDSSCDGEAGEECDSATPGSSATAPAWMGGSTAALAPGGPMNAKGVPTNGTPGVATRRESGLQRHESGLESALSENERRGTAA 558
            EEDSSCDG  GEECDSATPGS   APAWMG STAA APG P NA GVPT GTPGVATRRESGLQR  SGLESALSE+ER GT A
Sbjct:    2 EEDSSCDGAEGEECDSATPGS--PAPAWMGESTAATAPGPPTNATGVPTKGTPGVATRRESGLQRXXSGLESALSEDERGGTVA 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9270.20862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6K6_9PHAE1.010e-6876.53Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D7FU64_ECTSI6.300e-2980.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9270contigEcto-sp13_S_contig9270:4951..6269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size566
Hectar predicted targeting categorysignal peptide
Exons2
Cds size564
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.8121896-CDS-Ecto-sp13_S_contig9270:4950..52991681464197.8121896-CDS-Ecto-sp13_S_contig9270:4950..5299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9270 4951..5299 +
1681464197.8258936-CDS-Ecto-sp13_S_contig9270:6053..62681681464197.8258936-CDS-Ecto-sp13_S_contig9270:6053..6268Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9270 6054..6268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9270.20862.1prot_Ecto-sp13_S_contig9270.20862.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9270 4951..6268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9270.20862.1

>prot_Ecto-sp13_S_contig9270.20862.1 ID=prot_Ecto-sp13_S_contig9270.20862.1|Name=mRNA_Ecto-sp13_S_contig9270.20862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
ANPARWAGAIPLPGLVAAATGGAGGGGGAVASVCRPLSPGRLGGNNGDDY
SDNKSDGSSYGSGRFDDDDNTRNRSSSRGRPMGAAARPAAAPGPRTTSWE
DTEEDSSCDGEAGEECDSATPGSSATAPAWMGGSTAALAPGGPMNAKGVP
TNGTPGVATRRESGLQRHESGLESALSENERRGTAAAA
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mRNA from alignment at Ecto-sp13_S_contig9270:4951..6269+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9270.20862.1 ID=mRNA_Ecto-sp13_S_contig9270.20862.1|Name=mRNA_Ecto-sp13_S_contig9270.20862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1319bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9270:4951..6269+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAACCCGGCGCGGTGGGCGGGGGCGATACCGCTGCCCGGCCTGGTTGC
GGCCGCTACCGGCGGCGCAGGCGGCGGCGGCGGAGCGGTGGCGTCTGTTT
GTCGGCCGCTTTCTCCGGGTAGACTGGGAGGAAACAACGGCGACGACTAC
AGCGATAACAAGAGCGATGGAAGCAGCTATGGAAGCGGCAGGTTCGACGA
CGATGATAACACCCGGAACAGAAGCAGCAGCCGCGGTCGCCCTATGGGAG
CGGCGGCAAGACCCGCCGCCGCACCAGGACCCCGAACGACAAGTTGGGAG
GACACGGAGGAGGATTCTTCTTGCGATGGCGAAGCGGGGGAAGAGTGCGG
TAAGTGGCTCAACCCCCCTCGAGTATGTGTCACTATCAAGTCGTTCTATT
TCACCTGCGTAGTTGCTAGACCGGCGCTCCGGCACAAAGAGAGACCGGGG
TGCGCGGAGTATGATACAGCAGTCTTCCCCTCTGAAGCCTGTTGGCCGTG
TCTGCCGTGGGTGTATCTTTGGAGGCACATCGTTGCTTTGTTTCGCTTTA
ACCCCAGTCGATTCTTGACTTCCCTTGTCAGCTGAAAATTTCAAACCGGC
CGCCGTTGTCTACACGGGTGCGGTTTGTACCATATGTACGGTTTCGAACC
GACTGCTTGGCATCTCAACAGGCTGCTGTTTTTGACGTTACCTTGCACGA
GCACATTTGTTGTTGTTGTTGCTTTTTCGCCGGCTTGATGAAATGTCAGC
ATCGCCAGCACCAGTGGCTTTTTATGTTACACCCCTGTTGTTTTCATTTC
ACAATACACATGTTTCGTACTTGCTTGGTTGTTCGGCACAATGATGACTC
AACAACCCCTGCGCCAGCACCGGCATGGATCGGTTAGTTTGACACATCGT
TCCACATTTGTTTGTTGTAATCCACATCGCAGATAGCTGTTTTTTGTCGT
ATGCATGCTCACGTTTTTTCGCAGTGGAAATGAATAAATAAGCACTTGTG
CAAAAAAAGTAGCACCAGCACCTGCCTCGTCAGTTCACACTCTAATATTT
TGATTTCACCTTATATTTTGTTTCGTATGCTTGTAATCTCCGGCAACATG
AAGACTCAGCAACACCAGGATCGTCAGCAACAGCACCGGCATGGATGGGG
GGGTCGACCGCGGCATTGGCGCCGGGGGGCCCGATGAATGCGAAAGGGGT
TCCGACGAATGGAACACCGGGGGTAGCGACACGACGGGAGAGCGGCTTGC
AGCGACACGAGAGCGGCTTGGAGAGTGCCTTGAGTGAAAACGAGAGGAGG
GGCACCGCCGCCGCCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9270:4951..6269+

>mRNA_Ecto-sp13_S_contig9270.20862.1 ID=mRNA_Ecto-sp13_S_contig9270.20862.1|Name=mRNA_Ecto-sp13_S_contig9270.20862.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9270:4951..6269+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGAACCCGGCGCGGTGGGCGGGGGCGATACCGCTGCCCGGCCTGGTTGC
GGCCGCTACCGGCGGCGCAGGCGGCGGCGGCGGAGCGGTGGCGTCTGTTT
GTCGGCCGCTTTCTCCGGGTAGACTGGGAGGAAACAACGGCGACGACTAC
AGCGATAACAAGAGCGATGGAAGCAGCTATGGAAGCGGCAGGTTCGACGA
CGATGATAACACCCGGAACAGAAGCAGCAGCCGCGGTCGCCCTATGGGAG
CGGCGGCAAGACCCGCCGCCGCACCAGGACCCCGAACGACAAGTTGGGAG
GACACGGAGGAGGATTCTTCTTGCGATGGCGAAGCGGGGGAAGAGTGCGA
CTCAGCAACACCAGGATCGTCAGCAACAGCACCGGCATGGATGGGGGGGT
CGACCGCGGCATTGGCGCCGGGGGGCCCGATGAATGCGAAAGGGGTTCCG
ACGAATGGAACACCGGGGGTAGCGACACGACGGGAGAGCGGCTTGCAGCG
ACACGAGAGCGGCTTGGAGAGTGCCTTGAGTGAAAACGAGAGGAGGGGCA
CCGCCGCCGCCGCC
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