mRNA_Ecto-sp13_S_contig9267.20856.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9267.20856.1
Unique NamemRNA_Ecto-sp13_S_contig9267.20856.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9267.20856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9267contigEcto-sp13_S_contig9267:1803..2462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size660
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.4210496-UTR-Ecto-sp13_S_contig9267:1802..18641681464197.4210496-UTR-Ecto-sp13_S_contig9267:1802..1864Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9267 1803..1864 +
1681464197.4463205-UTR-Ecto-sp13_S_contig9267:2203..24621681464197.4463205-UTR-Ecto-sp13_S_contig9267:2203..2462Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9267 2204..2462 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.433735-CDS-Ecto-sp13_S_contig9267:1864..22031681464197.433735-CDS-Ecto-sp13_S_contig9267:1864..2203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9267 1865..2203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9267.20856.1prot_Ecto-sp13_S_contig9267.20856.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9267 1865..2203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9267.20856.1

>prot_Ecto-sp13_S_contig9267.20856.1 ID=prot_Ecto-sp13_S_contig9267.20856.1|Name=mRNA_Ecto-sp13_S_contig9267.20856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MDTPWILTNTDEQKYFQIKTHVGGHHAIIFERRGRQLTNTRLTSKHVRLT
TMMSLYLLCRNATREETTACNVQQTSQTPAMFPGSIRYAVGIVASFVKTH
NTTLIEVLPMRS*
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mRNA from alignment at Ecto-sp13_S_contig9267:1803..2462+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9267.20856.1 ID=mRNA_Ecto-sp13_S_contig9267.20856.1|Name=mRNA_Ecto-sp13_S_contig9267.20856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9267:1803..2462+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTTATGATCGTTTACGGTAGGGTGGCTGCGTAATTTTTGTGATACAG
GCGCAGTGCGCCATGGATACGCCATGGATACTAACTAATACCGATGAACA
AAAGTATTTCCAAATTAAAACACACGTGGGTGGACACCACGCAATAATCT
TCGAACGAAGGGGACGCCAGTTGACCAATACACGATTGACTTCGAAACAC
GTACGCCTTACCACGATGATGAGCCTTTACCTCTTGTGCCGAAACGCCAC
GCGGGAGGAAACCACCGCTTGTAATGTACAACAAACCAGCCAGACTCCCG
CGATGTTTCCGGGTTCAATTCGCTATGCTGTAGGCATCGTCGCCTCGTTT
GTTAAAACCCACAACACCACCTTAATCGAAGTGCTTCCTATGAGAAGCTG
ACTGTAACAAGAGAGACGACATGCCCACCCCTCAGATATACGCCCTCCCC
TGCAAGTCGACCGCCGCCACGAAGCAAGGCAGAAACGACGGAAGACACCG
AACTCTTACGACAAGAGACAGACCATTGCCGAGGGCCCGAGCGGCAAAAA
GCAAGCCGAAAAGGCGTCAACAAAGTTAGGATGAGTTTGAAAACAAGAAT
CAAGGGCGTCGGATGTCATATCCGTCGGTCAGCCACACACACCGACACAG
ATCCCACTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9267:1803..2462+

>mRNA_Ecto-sp13_S_contig9267.20856.1 ID=mRNA_Ecto-sp13_S_contig9267.20856.1|Name=mRNA_Ecto-sp13_S_contig9267.20856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9267:1803..2462+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATACGCCATGGATACTAACTAATACCGATGAACAAAAGTATTTCCA
AATTAAAACACACGTGGGTGGACACCACGCAATAATCTTCGAACGAAGGG
GACGCCAGTTGACCAATACACGATTGACTTCGAAACACGTACGCCTTACC
ACGATGATGAGCCTTTACCTCTTGTGCCGAAACGCCACGCGGGAGGAAAC
CACCGCTTGTAATGTACAACAAACCAGCCAGACTCCCGCGATGTTTCCGG
GTTCAATTCGCTATGCTGTAGGCATCGTCGCCTCGTTTGTTAAAACCCAC
AACACCACCTTAATCGAAGTGCTTCCTATGAGAAGCTGA
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