mRNA_Ecto-sp13_S_contig9265.20853.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9265.20853.1
Unique NamemRNA_Ecto-sp13_S_contig9265.20853.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9265.20853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9265contigEcto-sp13_S_contig9265:4472..5050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size579
Hectar predicted targeting categorysignal peptide
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.3062615-UTR-Ecto-sp13_S_contig9265:4471..44871681464197.3062615-UTR-Ecto-sp13_S_contig9265:4471..4487Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9265 4472..4487 +
1681464197.3253028-UTR-Ecto-sp13_S_contig9265:4820..50501681464197.3253028-UTR-Ecto-sp13_S_contig9265:4820..5050Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9265 4821..5050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464197.3161726-CDS-Ecto-sp13_S_contig9265:4487..48201681464197.3161726-CDS-Ecto-sp13_S_contig9265:4487..4820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9265 4488..4820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9265.20853.1prot_Ecto-sp13_S_contig9265.20853.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9265 4488..4820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9265.20853.1

>prot_Ecto-sp13_S_contig9265.20853.1 ID=prot_Ecto-sp13_S_contig9265.20853.1|Name=mRNA_Ecto-sp13_S_contig9265.20853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MHSRCGRSTMTRRTLLCLYCLCHETPVAPDVARLPRVCSSAATILSFLCG
PRAADRNHSCLCLKVGTPAIPPFSPRGSTADNSACRLVLHSSVFFHHYVG
LHHQPTENAV*
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mRNA from alignment at Ecto-sp13_S_contig9265:4472..5050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9265.20853.1 ID=mRNA_Ecto-sp13_S_contig9265.20853.1|Name=mRNA_Ecto-sp13_S_contig9265.20853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9265:4472..5050+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTTACAGGGATGCATGCATTCGCGTTGCGGCCGAAGTACGATGACGC
GCCGAACCCTGTTGTGTTTGTATTGTTTGTGTCATGAAACACCAGTAGCA
CCCGATGTTGCTCGTCTTCCACGCGTCTGCAGCTCTGCCGCAACGATCTT
GTCCTTTCTCTGTGGACCACGGGCGGCTGACCGCAACCACTCCTGTCTTT
GTTTAAAGGTTGGCACGCCGGCAATTCCACCCTTTTCTCCCCGAGGCTCG
ACTGCAGACAATTCTGCATGTAGACTTGTGCTACACTCGAGTGTATTTTT
CCACCACTACGTCGGCTTGCACCATCAACCTACTGAGAACGCCGTCTAGC
CTTTTGCGGCAGGATCATTGTTTCCACGCCGCGTCCGCTGCGATGAGGGT
TTTGTCGCATATTCCGCCACTTACTGTGTCGTTTTTCATCTAATTTTACG
GCGTTGGCGTCATTTACGTCAGGTATGGGTCTGTGCGCCAACATTACTCC
ACGTTTTCGGTTTTACGCCTGACATTTGCTGCCACCGCACCACTTCATGG
CGTACACCATGAGTATGACCTCGCAGGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9265:4472..5050+

>mRNA_Ecto-sp13_S_contig9265.20853.1 ID=mRNA_Ecto-sp13_S_contig9265.20853.1|Name=mRNA_Ecto-sp13_S_contig9265.20853.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9265:4472..5050+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATTCGCGTTGCGGCCGAAGTACGATGACGCGCCGAACCCTGTTGTG
TTTGTATTGTTTGTGTCATGAAACACCAGTAGCACCCGATGTTGCTCGTC
TTCCACGCGTCTGCAGCTCTGCCGCAACGATCTTGTCCTTTCTCTGTGGA
CCACGGGCGGCTGACCGCAACCACTCCTGTCTTTGTTTAAAGGTTGGCAC
GCCGGCAATTCCACCCTTTTCTCCCCGAGGCTCGACTGCAGACAATTCTG
CATGTAGACTTGTGCTACACTCGAGTGTATTTTTCCACCACTACGTCGGC
TTGCACCATCAACCTACTGAGAACGCCGTCTAG
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