mRNA_Ecto-sp13_S_contig9260.20848.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9260.20848.1
Unique NamemRNA_Ecto-sp13_S_contig9260.20848.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9260.20848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9260contigEcto-sp13_S_contig9260:4595..5526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size828
Hectar predicted targeting categoryother localisation
Exons2
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464196.9448173-UTR-Ecto-sp13_S_contig9260:4594..46941681464196.9448173-UTR-Ecto-sp13_S_contig9260:4594..4694Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9260 4595..4694 +
1681464196.9786274-UTR-Ecto-sp13_S_contig9260:5284..55261681464196.9786274-UTR-Ecto-sp13_S_contig9260:5284..5526Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9260 5285..5526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464196.9563386-CDS-Ecto-sp13_S_contig9260:4694..49571681464196.9563386-CDS-Ecto-sp13_S_contig9260:4694..4957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9260 4695..4957 +
1681464196.9672027-CDS-Ecto-sp13_S_contig9260:5061..52841681464196.9672027-CDS-Ecto-sp13_S_contig9260:5061..5284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9260 5062..5284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9260.20848.1prot_Ecto-sp13_S_contig9260.20848.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9260 4695..5284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9260.20848.1

>prot_Ecto-sp13_S_contig9260.20848.1 ID=prot_Ecto-sp13_S_contig9260.20848.1|Name=mRNA_Ecto-sp13_S_contig9260.20848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
MGARHGAQHLVCPCLPPHERAGGRNTSQRVFQKGPQLLLYYLYYYFYYTT
AYKVCFVRSRDTEMQIFVPAWFLDTRERMPTEEPLYVHRGRGLKPRATQA
ADLVLRQGVLVTLSHGIVALHDRVVLRVMLCPNSLLALTSLAKSPNVPQR
RKYITSGLCTT*
back to top

mRNA from alignment at Ecto-sp13_S_contig9260:4595..5526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9260.20848.1 ID=mRNA_Ecto-sp13_S_contig9260.20848.1|Name=mRNA_Ecto-sp13_S_contig9260.20848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9260:4595..5526+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCACAGCAGCACTCCCCCAAAACCGATTTGACCTGTTTCTTACGTAGA
CGGTTGCGCCGCCACCTCCTCACGCTCACTGCGCCACGGTCGCGGCCGCG
ATGGGCGCGAGACACGGCGCGCAGCATCTTGTGTGCCCCTGTCTCCCTCC
TCACGAAAGAGCCGGAGGCAGAAACACATCACAGCGCGTTTTTCAAAAGG
GACCACAACTACTATTGTACTACCTCTACTACTACTTCTACTACACGACG
GCCTACAAAGTGTGTTTTGTACGAAGTAGAGATACGGAGATGCAGATTTT
TGTACCGGCGTGGTTTCTGGATACGCGGGAACGGATGCCGACCGAAGAAC
CCTTGTATGTACAGTACAGCGAGGAAAGGCCTGGGAAATTTCTTCGTTGG
GCGGGTACCTCAAGACGGCGATTGACACCAGTCAACCGTCACCTAAGTCT
GCCACAAGAGCAAAGAGCAGGGGGAGAGGACTGAAACCTAGGGCAACACA
AGCCGCTGATTTGGTTTTGCGACAGGGAGTATTGGTCACGCTTAGTCACG
GTATTGTAGCCCTCCACGATCGAGTCGTGCTTCGGGTTATGTTGTGCCCA
AATAGCCTCCTCGCTCTGACGTCTCTTGCTAAATCACCCAATGTACCACA
ACGTCGAAAGTACATAACTAGCGGGTTGTGTACTACATGACACATGGTTA
CGTGACTCATGTGGTTGGTGAGCTTGGTGAGCTTGGTGACCTCTCCTGGT
GGGAAAGTTGACTGCAAAATGGTTGATTGTTTTCGGCGATCATACGATGC
TTTAGTCTAGAGATATTGAAATACTTGTATCTGAGAGCGAGGCACACAAA
GGCAACGAACCCGTCCATTGTCTTCATTCAACAAAGAGTGTTTGAGGAGG
CGTGAGGACCACGATGTCACGTACACACCGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9260:4595..5526+

>mRNA_Ecto-sp13_S_contig9260.20848.1 ID=mRNA_Ecto-sp13_S_contig9260.20848.1|Name=mRNA_Ecto-sp13_S_contig9260.20848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9260:4595..5526+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGCGAGACACGGCGCGCAGCATCTTGTGTGCCCCTGTCTCCCTCC
TCACGAAAGAGCCGGAGGCAGAAACACATCACAGCGCGTTTTTCAAAAGG
GACCACAACTACTATTGTACTACCTCTACTACTACTTCTACTACACGACG
GCCTACAAAGTGTGTTTTGTACGAAGTAGAGATACGGAGATGCAGATTTT
TGTACCGGCGTGGTTTCTGGATACGCGGGAACGGATGCCGACCGAAGAAC
CCTTGTATGTACACAGGGGGAGAGGACTGAAACCTAGGGCAACACAAGCC
GCTGATTTGGTTTTGCGACAGGGAGTATTGGTCACGCTTAGTCACGGTAT
TGTAGCCCTCCACGATCGAGTCGTGCTTCGGGTTATGTTGTGCCCAAATA
GCCTCCTCGCTCTGACGTCTCTTGCTAAATCACCCAATGTACCACAACGT
CGAAAGTACATAACTAGCGGGTTGTGTACTACATGA
back to top