mRNA_Ecto-sp13_S_contig926.20846.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig926.20846.1
Unique NamemRNA_Ecto-sp13_S_contig926.20846.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig926.20846.1 vs. uniprot
Match: A0A6H5L5A3_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 9.570e-23
Identity = 75/93 (80.65%), Postives = 75/93 (80.65%), Query Frame = -3 
Query: 1312 AEAAAGXXXDGVAARGGNNTGTNEGTVGGVGRVDXXXXXXXXXXXXXXXXADTAAAPARTAGGAGANPAVFDAWEYLGGFGIGQRGQDDGWAV 1590
            AE AAG   D   AR  NNTG NEGTVGGVGRVD   XXXXXXXXXX   ADTAAAPA TAGGAGANPAVFDAWEYLG FGIGQRGQDDGWAV
Sbjct: 1510 AEVAAGAGGDDGEARVSNNTGVNEGTVGGVGRVDEEKXXXXXXXXXXGGNADTAAAPAGTAGGAGANPAVFDAWEYLGVFGIGQRGQDDGWAV 1602
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig926.20846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5A3_9PHAE9.570e-2380.65F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig926contigEcto-sp13_S_contig926:8880..10471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1592
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_002730.1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464196.7874615-CDS-Ecto-sp13_S_contig926:8879..90951681464196.7874615-CDS-Ecto-sp13_S_contig926:8879..9095Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig926 8880..9095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464196.7993088-UTR-Ecto-sp13_S_contig926:9095..104711681464196.7993088-UTR-Ecto-sp13_S_contig926:9095..10471Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig926 9096..10471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig926.20846.1prot_Ecto-sp13_S_contig926.20846.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig926 8880..9095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig926.20846.1

>prot_Ecto-sp13_S_contig926.20846.1 ID=prot_Ecto-sp13_S_contig926.20846.1|Name=mRNA_Ecto-sp13_S_contig926.20846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MKPLIPMRIVRFWPIDGLERSFAHTPCISVLGSGRREKEQPSRRCSTYVL
DLAGRRDSSSITGTRSRASGD*
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mRNA from alignment at Ecto-sp13_S_contig926:8880..10471+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig926.20846.1 ID=mRNA_Ecto-sp13_S_contig926.20846.1|Name=mRNA_Ecto-sp13_S_contig926.20846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1592bp|location=Sequence derived from alignment at Ecto-sp13_S_contig926:8880..10471+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACCCCTAATACCCATGAGAATCGTTCGGTTCTGGCCCATCGACGG
TCTTGAGCGATCATTCGCCCACACCCCGTGCATCTCTGTACTCGGATCAG
GGCGCCGAGAAAAAGAACAGCCATCGCGTCGCTGTTCCACGTACGTACTC
GACTTGGCAGGCAGGCGGGACTCAAGCTCAATCACGGGCACCAGATCGAG
GGCGAGCGGTGATTGAAACATCGTCCCCTCCATGTGACAGCGGCGACGTA
CCATCAATGACAGGCCACAGCTGGCAGGCAGTTGAACCAACATGCCTGCT
TTCGACATACCGGTGAAAAGCTTCGGGGACAACCCTTGCTGACACGGCAC
CATGCGGTTCTGGTGGGGAGTGTTGGGGAGCCACTCGTGGGGCATATTTC
GTTCTCTCACGACGGTTGGTTGCTGTTGGGTATTGTAAGCACAAGATCGC
AGGACTGCAGAACATGACTCGGGGATCACTATTCTTCCTGTGGTACCATC
CGCGCGCCCCCCCTCCCATACGTGTGGTGGACGTACGTGGGCGATTATCG
GGCGTAAGCCGAGAGGCAGACATGGGATGCTATGTGTGTGTCTCGAAGAC
CACGACCGATTACGCACGACAGTTGAAAAAAAATACTCAACTTGTGTCGA
CGAACAAAAAAGACAAGAACAAAAGACAAGCCCCTCACAAACTACAGCGG
TGAGTAGCAGAAAAGGTGATCGAGGCTCAAAAGAACAGGTTACCACATAG
CCAATCAACCGTTCGTGCGCATTATTCGGCACAGGAAAGACCTCAAGAGG
TGTCCCCAACCCAACAACGCGCACAAAGAAAGAAGCGAACGCACACACAG
CCATCTTACACTTCGTGTGACCAACATCATGTCCCTACAGCTGGCCTTCG
TGCCAGCACTGAACCACAACACCACCATCGAGCACAACACCAGACACCAC
CCACGACCACTACCAACATCGGAGAAATTGTCGTGTTCATGGCGGAGGGA
GTAAAAACATGTTAGCTCCCACCTCCTCCTCCTCCTCTTCCTCCTCCTCT
CACAACAGCTCACGCCGACATTCACTAAAAACAAATAAGAGAACGAGTCT
CATGTACAAAAAGTCGCGGGTGGAGCAGTGTCGGAACACCGGCCGCAGTC
GGTCGTCCTGGTGCAGCAGCGTTCTGAACATAGAGTGCCAAGCCGCGCAC
GCAATCAGACGGCGAGCCCACACCACGGTCCCTGCGGTCGGTACCGGCGA
CGGAGACCAGGCGAGAGCTTGAGGATAAAAAAAACGCCACGTAACACGCT
GATATCAATCAGACCGCCCACCCGTCGTCCTGCCCGCGCTGGCCTATCCC
AAACCCGCCGAGATACTCCCACGCGTCGAACACCGCGGGGTTAGCCCCGG
CGCCGCCGGCGGTGCGGGCCGGGGCCGCCGCGGTATCGGCGTTACCCCCG
TCCTCCTTCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCGTCCACTCTACC
AACGCCGCCTACGGTCCCTTCATTTGTTCCGGTGTTGTTACCTCCCCGCG
CCGCGACGCCATCGCCTCCCCCTCCGGCAGCAGCTTCTGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig926:8880..10471+

>mRNA_Ecto-sp13_S_contig926.20846.1 ID=mRNA_Ecto-sp13_S_contig926.20846.1|Name=mRNA_Ecto-sp13_S_contig926.20846.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig926:8880..10471+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACCCCTAATACCCATGAGAATCGTTCGGTTCTGGCCCATCGACGG
TCTTGAGCGATCATTCGCCCACACCCCGTGCATCTCTGTACTCGGATCAG
GGCGCCGAGAAAAAGAACAGCCATCGCGTCGCTGTTCCACGTACGTACTC
GACTTGGCAGGCAGGCGGGACTCAAGCTCAATCACGGGCACCAGATCGAG
GGCGAGCGGTGATTGA
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