mRNA_Ecto-sp13_S_contig9258.20840.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9258.20840.1
Unique NamemRNA_Ecto-sp13_S_contig9258.20840.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9258.20840.1 vs. uniprot
Match: D7FX16_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX16_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.170e-23
Identity = 58/83 (69.88%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    1 MTAPPPMVPESFASEVAIPSVGQESSVVDRGTAAAAVGAGGEIELWVTALAPLPQDVFAPEVNMGGQCGRYGRRR--LPCFMS 243
            MTAPPP+VP SFA E A  + GQE   +D G AAA  G  G I+LWVTALAPLPQDVFAPEVNM  QCGRYGRRR  LPCF S
Sbjct:  859 MTAPPPIVPGSFAFEGAGTAGGQEPWAIDLGMAAAGAGGWG-IDLWVTALAPLPQDVFAPEVNMAVQCGRYGRRRRRLPCFAS 940
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9258.20840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX16_ECTSI1.170e-2369.88Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9258contigEcto-sp13_S_contig9258:4009..4260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_002230.1
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464196.4665804-CDS-Ecto-sp13_S_contig9258:4008..42601681464196.4665804-CDS-Ecto-sp13_S_contig9258:4008..4260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9258 4009..4260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9258.20840.1prot_Ecto-sp13_S_contig9258.20840.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9258 4009..4260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9258.20840.1

>prot_Ecto-sp13_S_contig9258.20840.1 ID=prot_Ecto-sp13_S_contig9258.20840.1|Name=mRNA_Ecto-sp13_S_contig9258.20840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MTAPPPMVPESFASEVAIPSVGQESSVVDRGTAAAAVGAGGEIELWVTAL
APLPQDVFAPEVNMGGQCGRYGRRRLPCFMSFQ*
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mRNA from alignment at Ecto-sp13_S_contig9258:4009..4260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9258.20840.1 ID=mRNA_Ecto-sp13_S_contig9258.20840.1|Name=mRNA_Ecto-sp13_S_contig9258.20840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9258:4009..4260- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGCTCCTCCCCCCATGGTGCCGGAGAGTTTCGCGTCCGAGGTTGC
GATACCGTCAGTGGGACAAGAGTCGTCCGTAGTTGACCGGGGGACGGCTG
CTGCTGCTGTAGGGGCTGGAGGGGAAATCGAACTGTGGGTCACGGCTCTT
GCCCCTCTTCCTCAGGATGTCTTCGCCCCGGAGGTTAACATGGGCGGGCA
ATGCGGCCGCTACGGCCGCCGCCGCCTCCCCTGCTTCATGTCTTTTCAGT
AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9258:4009..4260-

>mRNA_Ecto-sp13_S_contig9258.20840.1 ID=mRNA_Ecto-sp13_S_contig9258.20840.1|Name=mRNA_Ecto-sp13_S_contig9258.20840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9258:4009..4260- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGCTCCTCCCCCCATGGTGCCGGAGAGTTTCGCGTCCGAGGTTGC
GATACCGTCAGTGGGACAAGAGTCGTCCGTAGTTGACCGGGGGACGGCTG
CTGCTGCTGTAGGGGCTGGAGGGGAAATCGAACTGTGGGTCACGGCTCTT
GCCCCTCTTCCTCAGGATGTCTTCGCCCCGGAGGTTAACATGGGCGGGCA
ATGCGGCCGCTACGGCCGCCGCCGCCTCCCCTGCTTCATGTCTTTTCAGT
AA
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