mRNA_Ecto-sp13_S_contig92425.20825.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig92425.20825.1
Unique NamemRNA_Ecto-sp13_S_contig92425.20825.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig92425.20825.1 vs. uniprot
Match: D7G376_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G376_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 7.650e-20
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:    1 AVCADGSPGVFYMATNTSSTDYVMFIQGGGACAHDEELCDE 123
            AVCADGSPGVFYMATNTSSTDYVMFIQGGGACA+DEELCDE
Sbjct:   56 AVCADGSPGVFYMATNTSSTDYVMFIQGGGACAYDEELCDE 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92425.20825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G376_ECTSI7.650e-2097.56ABC transporter domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92425contigEcto-sp13_S_contig92425:9..134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score90.1
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog2880.D7G376
Model size126
KEGG koko:K05679,ko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.pectin acetylesterase activity
EggNOG OGsCOG1131@1,KOG0061@2759,KOG4287@1,KOG4287@2759
Cds size126
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464195.4729004-CDS-Ecto-sp13_S_contig92425:8..1341681464195.4729004-CDS-Ecto-sp13_S_contig92425:8..134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig92425 9..134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92425.20825.1prot_Ecto-sp13_S_contig92425.20825.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig92425 9..134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig92425.20825.1

>prot_Ecto-sp13_S_contig92425.20825.1 ID=prot_Ecto-sp13_S_contig92425.20825.1|Name=mRNA_Ecto-sp13_S_contig92425.20825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
AVCADGSPGVFYMATNTSSTDYVMFIQGGGACAHDEELCDE*
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mRNA from alignment at Ecto-sp13_S_contig92425:9..134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig92425.20825.1 ID=mRNA_Ecto-sp13_S_contig92425.20825.1|Name=mRNA_Ecto-sp13_S_contig92425.20825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92425:9..134+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTTTGCGCTGATGGTTCACCCGGGGTCTTCTACATGGCGACAAACAC
GTCATCGACAGACTACGTGATGTTCATTCAAGGAGGGGGAGCGTGTGCAC
ATGATGAAGAGCTCTGTGACGAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig92425:9..134+

>mRNA_Ecto-sp13_S_contig92425.20825.1 ID=mRNA_Ecto-sp13_S_contig92425.20825.1|Name=mRNA_Ecto-sp13_S_contig92425.20825.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92425:9..134+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGTTTGCGCTGATGGTTCACCCGGGGTCTTCTACATGGCGACAAACAC
GTCATCGACAGACTACGTGATGTTCATTCAAGGAGGGGGAGCGTGTGCAC
ATGATGAAGAGCTCTGTGACGAGTAA
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