mRNA_Ecto-sp13_S_contig924.20818.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig924.20818.1
Unique NamemRNA_Ecto-sp13_S_contig924.20818.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: D7G5D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D8_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 5.040e-122
Identity = 265/284 (93.31%), Postives = 266/284 (93.66%), Query Frame = 2 
Query:   65 QRRCRMRLPPGGAAPSASATTSTTTIPSTASAAPXXVSXSPSSSLWPSTADLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDRLLSARPQAGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VAEGLKSSGRRDRSSGRAVAATGDFPKLGMRLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEV 913
            +RRCRMRLPPGGAAPSA ATT     PS  SAAP  VS SPSSSLWPSTADLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDRLLSAR QAGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VAEGL SSGRRD SSGR VAATG FPKLGMRLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSS RTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEV
Sbjct:   79 ERRCRMRLPPGGAAPSACATTXXXXNPSPDSAAPPTVSASPSSSLWPSTADLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDRLLSARHQAGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGLASSGRRDCSSGRLVAATGGFPKLGMRLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSLRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEV 362
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: A0A836C811_9STRA (ArgK protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C811_9STRA)

HSP 1 Score: 283 bits (724), Expect = 6.070e-87
Identity = 144/210 (68.57%), Postives = 166/210 (79.05%), Query Frame = 2 
Query:  596 LGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVEHTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATASDYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVWEQARR----LHVHRPF 1213
            +GIAGPPGAGKS+FIE LG RL  AG RVAVIS+DPSS R+GGSILGDKTRM ELSR P+AFVR CP+ GVLGG++ +TH VVLLCQ A YD VIVETVGLGQ+EVEVE TVD+L L+LPPA GDDLQGSKKGI+E AD +VVNK+DG+LE  AR TA DYS A+ Y R KL  W PPVL CSA +  G+D++WEQ  +    LH H  F
Sbjct:    1 VGIAGPPGAGKSTFIEALGLRLVQAGKRVAVISVDPSSLRSGGSILGDKTRMQELSRTPNAFVRACPSGGVLGGIAAHTHSVVLLCQAARYDVVIVETVGLGQSEVEVEQTVDVLTLLLPPASGDDLQGSKKGIIEAADLVVVNKADGELEGPARLTAGDYSNAMHYNRPKLPFWHPPVLLCSARKGLGIDKMWEQVEKFCAALHEHGEF 210
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: A0A2D4BST0_PYTIN (LAO/AO transport system ATPase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BST0_PYTIN)

HSP 1 Score: 273 bits (697), Expect = 5.750e-82
Identity = 161/349 (46.13%), Postives = 211/349 (60.46%), Query Frame = 2 
Query:  197 LWPSTADLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDRLLSARPQAGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGLKSSGRRDRSSGRAVAATGDFPKLGM---RLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVEHTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATASDYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVWEQARRLHVHRPFLSFDVAQ 1234
            + PST  LV+G++AG+R +LSRAITL ES      +QAEL+LD +L                                                                 RRD   G A  ++     LG+   RLGIAGPPGAGKS+FIE LG+ LT  G++VAV++IDPSSSR+GGSILGDKTRM  LS DP+AFVR  P+RG LGG++++T+++VLLC+ AGYD V+VE+VGLGQ+E+ ++ TVDM++L++PPAGGD+LQGSKKGI+E+AD IVVNK+DG+L+ AA+  A D+  AL   RRK   W P V  CSA+   GVD+VWE           LS  +AQ
Sbjct:    1 MLPSTQRLVEGVIAGNRTALSRAITLAESSLKRDEQQAELMLDTVLKK---------------------------------------------------------------RRDARHGHARQSS----SLGLPSFRLGIAGPPGAGKSTFIESLGQHLTERGHKVAVLAIDPSSSRSGGSILGDKTRMTNLSNDPNAFVRPSPSRGTLGGVAQHTNDIVLLCEAAGYDIVLVESVGLGQSEIIIDDTVDMVMLLVPPAGGDELQGSKKGIMEIADVIVVNKADGELKSAAKHAAVDFMHALQLLRRKDPDWEPKVKMCSAIEGAGVDKVWEVCEEYRSKMXALS-KIAQ 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: A0A8K1CFL8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFL8_PYTOL)

HSP 1 Score: 268 bits (684), Expect = 6.200e-80
Identity = 155/328 (47.26%), Postives = 201/328 (61.28%), Query Frame = 2 
Query:  197 LWPSTADLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDRLLSARPQAGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGLKSSGRRDRSSGRAVAATGDFPKLGMRLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVEHTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATASDYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVWE 1180
            + P T  LV+G+ AG+R +LSRAITLVES       QAELLLD +L  R                                                              R  R+    + A   F     RLGIAGPPGAGKS+FIE LG+ LT  G++VAV++IDPSSSRTGGSILGDKTRM  LS DP+AFVR  P+RG LGG++++T+++VLLC+ AGYD V+VE+VGLGQ+E+ ++ TVDM++L++PPAGGD+LQGSKKGI+E+AD +VVNK+DGDL+ AA+  A D+  A    RRK   W P V  CS++ + GVD+VWE
Sbjct:   15 MLPITKKLVEGVTAGNRTALSRAITLVESTLKSDGEQAELLLDEVLKRR--------------------------------------------------------------RDIRNRQTKLQALPSF-----RLGIAGPPGAGKSTFIEALGQYLTKKGHKVAVLAIDPSSSRTGGSILGDKTRMTYLSNDPNAFVRPSPSRGTLGGVAQHTNDIVLLCEAAGYDIVLVESVGLGQSEIVIDDTVDMVMLLVPPAGGDELQGSKKGIMEIADIVVVNKADGDLKSAAKHAAVDFMHAFQLLRRKDPDWEPKVRMCSSIENTGVDKVWE 275
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: W7TPV1_9STRA (Methylmalonic aciduria type a mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPV1_9STRA)

HSP 1 Score: 266 bits (680), Expect = 1.860e-78
Identity = 158/339 (46.61%), Postives = 202/339 (59.59%), Query Frame = 2 
Query:  194 SLWPSTADLVDGILAGSRASLSRAITLVESHRLDHRRQAELLLDRLLSARPQAGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAEGLKSSGR-RDRSSGRAVAATGDFPKLG-------MRLGIAGPPGAGKSSFIEVLGKRLTSAGN-RVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVEHTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATASDYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVWEQ 1183
            S+ P T  L +G+L G+R +LSRAITL+ES +  HR  AE LLD ++  R +                                                       ++  GR +  +S    A   D  ++G       +R+GIAGPPGAGKS+FIE LGK LT +   RVAVI++DPSSSR+GGSILGDKTRM EL++DP AFVR CP  GVLGG++RYT++VVLLCQ A +D V +E+VGLGQ+E  ++   DMLLL++PPAGGD+LQG KKGI+EVAD IVVNK+DG L  AA+ TA+ Y  AL + RRK   W P V  CSAL    +  VWEQ
Sbjct:   43 SMTPETRQLAEGVLRGNRLALSRAITLIESTKESHRLDAEALLDHVVYERSRR------------------------------------------------------VREKGRLKPGNSTSNAACVADEGRIGTSENVRPLRVGIAGPPGAGKSTFIEALGKYLTDSKKLRVAVIAVDPSSSRSGGSILGDKTRMYELAKDPKAFVRACPTSGVLGGVARYTNDVVLLCQAASFDIVFIESVGLGQSETIIDQASDMLLLLVPPAGGDELQGVKKGIMEVADVIVVNKADGHLLTAAQHTAAAYQHALCFQRRKWDAWMPSVTLCSALERHRIADVWEQ 327
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: A0A485L5N5_9STRA (Aste57867_15959 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L5N5_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.410e-75
Identity = 125/204 (61.27%), Postives = 161/204 (78.92%), Query Frame = 2 
Query:  569 GDFPKLGMRLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVEHTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATASDYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVWE 1180
            G+      R+GIAGPPGAGKS+FIE LG  LT  G++VAV++IDPSSS TGGSILGDKTRM  LS  P AFVR  P RG LGG++++T+E+VLLC+ +GYD V+VE+VGLGQ+E+ ++ TVDM++L++PPAGGD+LQGSKKGI+E+AD +VVNK+DG+L+ AA+ TA DY  AL  ARRK   W P V  CSA+  +GVD VW+
Sbjct:   68 GEGANSSFRVGIAGPPGAGKSTFIEALGLNLTQKGHKVAVLAIDPSSSVTGGSILGDKTRMTHLSNSPHAFVRPSPTRGTLGGVAQHTNEIVLLCEASGYDVVLVESVGLGQSEIIIDDTVDMVMLLVPPAGGDELQGSKKGIMEIADVVVVNKADGELKSAAKHTAVDYMHALQLARRKDPDWKPTVKMCSAIEGDGVDGVWD 271
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: W2LL69_PHYPR (LAO/AO transport system ATPase, variant 3 n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LL69_PHYPR)

HSP 1 Score: 253 bits (646), Expect = 7.450e-75
Identity = 125/203 (61.58%), Postives = 163/203 (80.30%), Query Frame = 2 
Query:  572 DFPKL-GMRLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVEHTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATASDYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVW 1177
            D P+L   RLGIAGPPGAGKS+FIE LG  LT+ G++VAV++IDPSSSR+GGSILGDKTRM++LS DP+AFVR  P+RG LGG++++T+E+VLLC+  GYD ++VE+VGLGQ+E+ ++ TVDM++L++ PAGGDDLQG KKGIVE+AD +VVNK+DGDL+  A+ TA DY  A+   RRK   W P V   SAL  +G+D VW
Sbjct:   91 DPPELTSFRLGIAGPPGAGKSTFIETLGLFLTAQGHKVAVLAIDPSSSRSGGSILGDKTRMEKLSNDPNAFVRPSPSRGTLGGVAQHTNEIVLLCEAGGYDIILVESVGLGQSEIVIDDTVDMVMLLVSPAGGDDLQGQKKGIVEIADIVVVNKADGDLKGPAKHTAVDYMHAMHLMRRKDPDWEPKVKMISALEKKGIDNVW 293
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: A0A024TKX0_9STRA (LAO/AO transport system ATPase n=11 Tax=Aphanomyces TaxID=100860 RepID=A0A024TKX0_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.180e-74
Identity = 124/200 (62.00%), Postives = 158/200 (79.00%), Query Frame = 2 
Query:  581 KLGMRLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVEHTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATASDYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVWE 1180
            K   R+GIAGPPGAGKS+FIE LG  LT  G++VAV++IDPSSS TGGSILGDKTRM  L+  P AFVR  P RG LGG++++T+E+VLLC+  GYD V+VE+VGLGQ+E+ ++ TVD ++LM+PPAGGD+LQGSKKGI+E+AD +VVNK+DG+L+ AA+ TA DY  AL  ARRK   W P V  CSA+  +GVD VW+
Sbjct:   62 KPSFRVGIAGPPGAGKSTFIEALGLSLTKKGHKVAVLAIDPSSSVTGGSILGDKTRMTHLANCPDAFVRPSPTRGTLGGVAQHTNEIVLLCEACGYDIVLVESVGLGQSEIVIDDTVDFVMLMVPPAGGDELQGSKKGIMEIADIVVVNKADGELKSAAKHTAVDYMHALQLARRKDPAWKPVVKMCSAVEGDGVDGVWD 261
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: H3GW23_PHYRM (AAA domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=H3GW23_PHYRM)

HSP 1 Score: 253 bits (646), Expect = 3.020e-74
Identity = 119/196 (60.71%), Postives = 163/196 (83.16%), Query Frame = 2 
Query:  590 MRLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVEHTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATASDYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVW 1177
             RLGIAGPPGAGKS+FIE LG+ LT+ G++VAV++IDPSSSR+GGSILGDKTRM++LS DP+AFVR  P RG LGG++++T+++VLLC+  GYD ++VE+VGLGQ+E+ ++ TVDM++L++PPAGGD+LQG KKGIVE+AD +VVNK+DG+L   A+ TA DY  A+ + RRK + W P V   S+L ++G+D+VW
Sbjct:   90 FRLGIAGPPGAGKSTFIETLGQLLTAQGHKVAVLAIDPSSSRSGGSILGDKTRMEKLSNDPNAFVRPSPTRGTLGGVAQHTNDIVLLCEAGGYDIILVESVGLGQSEIVIDDTVDMVMLLVPPAGGDELQGQKKGIVEIADIVVVNKADGELAGPAKHTAVDYMHAMHFIRRKDADWEPKVKMISSLENKGIDKVW 285
[Close]
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Match: G4ZEZ6_PHYSP (AAA domain-containing protein n=21 Tax=Phytophthora TaxID=4783 RepID=G4ZEZ6_PHYSP)

HSP 1 Score: 252 bits (643), Expect = 4.030e-74
Identity = 120/196 (61.22%), Postives = 161/196 (82.14%), Query Frame = 2 
Query:  590 MRLGIAGPPGAGKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDPSAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVEHTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATASDYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVW 1177
             RLGIAGPPGAGKS+FIE LG+ LT+ G++VAV++IDPSSSR+GGSILGDKTRM++LS DP+AFVR  P+RG LGG++++T+++VLLC+  GYD ++VE+VGLGQ+E+ ++ TVDM++L++PPAGGD+LQG KKGIVE+AD +VVNK+DG+L   A+ TA DY  A+   RRK   W P V   SAL  +G+D+VW
Sbjct:   65 FRLGIAGPPGAGKSTFIETLGQFLTAQGHKVAVLAIDPSSSRSGGSILGDKTRMEKLSNDPNAFVRPSPSRGTLGGVAQHTNDIVLLCEAGGYDIILVESVGLGQSEIVIDDTVDMVMLLVPPAGGDELQGQKKGIVEIADIVVVNKADGELAAPAKHTAVDYMHAMHLMRRKDPDWEPKVKMISALEKKGIDKVW 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig924.20818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5D8_ECTSI5.040e-12293.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C811_9STRA6.070e-8768.57ArgK protein (Fragment) n=1 Tax=Tribonema minus Ta... [more]
A0A2D4BST0_PYTIN5.750e-8246.13LAO/AO transport system ATPase n=1 Tax=Pythium ins... [more]
A0A8K1CFL8_PYTOL6.200e-8047.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W7TPV1_9STRA1.860e-7846.61Methylmalonic aciduria type a mitochondrial n=2 Ta... [more]
A0A485L5N5_9STRA1.410e-7561.27Aste57867_15959 protein n=1 Tax=Aphanomyces stella... [more]
W2LL69_PHYPR7.450e-7561.58LAO/AO transport system ATPase, variant 3 n=6 Tax=... [more]
A0A024TKX0_9STRA1.180e-7462.00LAO/AO transport system ATPase n=11 Tax=Aphanomyce... [more]
H3GW23_PHYRM3.020e-7460.71AAA domain-containing protein n=8 Tax=Phytophthora... [more]
G4ZEZ6_PHYSP4.030e-7461.22AAA domain-containing protein n=21 Tax=Phytophthor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig924contigEcto-sp13_S_contig924:462..6535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score377.9
Seed ortholog evalue6.1e-102
Seed eggNOG ortholog2880.D7G5D8
Preferred nameMMAA
Model size2081
KEGG koko:K07588
Hectar predicted targeting categorymitochondrion
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0009235,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017144,GO:0019001,GO:0031974,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033013,GO:0035639,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046983,GO:0051186,GO:0070013,GO:0071704,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564
Exons8
EggNOG free text desc.cobalamin biosynthetic process
EggNOG OGs2QR2W@2759,COG1703@1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-00_008700.1
Cds size1215
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig924.20818.1prot_Ecto-sp13_S_contig924.20818.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig924 1306..6513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464194.8148894-UTR-Ecto-sp13_S_contig924:461..13051681464194.8148894-UTR-Ecto-sp13_S_contig924:461..1305Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig924 462..1305 -
1681464194.9362535-UTR-Ecto-sp13_S_contig924:6513..65351681464194.9362535-UTR-Ecto-sp13_S_contig924:6513..6535Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig924 6514..6535 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464194.8327522-CDS-Ecto-sp13_S_contig924:1305..14921681464194.8327522-CDS-Ecto-sp13_S_contig924:1305..1492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig924 1306..1492 -
1681464194.8491492-CDS-Ecto-sp13_S_contig924:1892..19621681464194.8491492-CDS-Ecto-sp13_S_contig924:1892..1962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig924 1893..1962 -
1681464194.8614836-CDS-Ecto-sp13_S_contig924:2321..23911681464194.8614836-CDS-Ecto-sp13_S_contig924:2321..2391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig924 2322..2391 -
1681464194.8767884-CDS-Ecto-sp13_S_contig924:3302..34381681464194.8767884-CDS-Ecto-sp13_S_contig924:3302..3438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig924 3303..3438 -
1681464194.8910558-CDS-Ecto-sp13_S_contig924:4060..41911681464194.8910558-CDS-Ecto-sp13_S_contig924:4060..4191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig924 4061..4191 -
1681464194.9037929-CDS-Ecto-sp13_S_contig924:4505..48731681464194.9037929-CDS-Ecto-sp13_S_contig924:4505..4873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig924 4506..4873 -
1681464194.9154232-CDS-Ecto-sp13_S_contig924:5209..54171681464194.9154232-CDS-Ecto-sp13_S_contig924:5209..5417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig924 5210..5417 -
1681464194.926013-CDS-Ecto-sp13_S_contig924:6468..65131681464194.926013-CDS-Ecto-sp13_S_contig924:6468..6513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig924 6469..6513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig924.20818.1

>prot_Ecto-sp13_S_contig924.20818.1 ID=prot_Ecto-sp13_S_contig924.20818.1|Name=mRNA_Ecto-sp13_S_contig924.20818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=405bp
MSGLPRWTMAIASKQRRCRMRLPPGGAAPSASATTSTTTIPSTASAAPPT
VSASPSSSLWPSTADLVDGILAGSRASLSRAITLVESHRLDHRRQAELLL
DRLLSARPQAGAPPPPPPVSQPPPPPPPPPEESVTDSASGGSWSSSLSTP
PHSGTTAAAAVAEGLKSSGRRDRSSGRAVAATGDFPKLGMRLGIAGPPGA
GKSSFIEVLGKRLTSAGNRVAVISIDPSSSRTGGSILGDKTRMDELSRDP
SAFVRGCPARGVLGGLSRYTHEVVLLCQVAGYDPVIVETVGLGQNEVEVE
HTVDMLLLMLPPAGGDDLQGSKKGIVEVADAIVVNKSDGDLEKAARATAS
DYSAALGYARRKLSCWAPPVLRCSALRSEGVDQVWEQARRLHVHRPFLSF
DVAQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig924:462..6535-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig924.20818.1 ID=mRNA_Ecto-sp13_S_contig924.20818.1|Name=mRNA_Ecto-sp13_S_contig924.20818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig924:462..6535- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGAGCCGGCGTACTACCCCGATGAGTGGTCTTCCCCGCTGGACAATGG
CTATCGCCTCGAAACAGGTACCCAGCCTCCATGTTGTTGCTTTGTGCAGA
TCAAAAGCAGACTCCAGCATTCAAACGCCGATCCGCGTTTGCAGTACGTT
GAGGTTTGAACATCATCGCCCAGGTTGGATGAAAATTCGTTGAATGGAGT
TATTTAAAACTCAATGTAGGACTTTTCTTTACTTCCAGGACCGTGCGCGC
TGTGGTGAGTCCACGGGTCCACCCATCTTGCTGCTACAGCAGATCTTTCA
TCTTCACGCGAGACTGTTAGCTGGTGCCAATGAGTATTGGCGTAGATGGA
TGGTGTGGCCAGCGTCGAACTACTCGTGCAAGGTCAGCATCCGGGTAGGC
TGATTCTGCCATTGTTGAACTCACCAGACCTGTAAACCGAGGTCAACCTA
GAGGGAGCTTTCGCGACGTAAGGTATTCGTGCAAGTCGAGGATGGCACCA
TCAGCAGAGACGCGGAGACGCACGATCATTGCTTTGCAATACCAGAAGAT
GCGAAGGTTAAGGTTTCGTGAAGAAGAAGCTCTGGGAGCAAGCTACGACG
ACGAGGCTGATCTAGAGTACTACGACTCCTCGAGCAGCGAACGGCAGCGG
GAACTTGCCGCGGTAGCGGCGATAGGAGTGACGATGGGACTCCCAATGAC
AATGGGGGGCTACCGCTCTGTTCACGAGGTTGAAGAATTTGCTCGCCTGT
GCGCACACGATATACCTCCAGCAGCCGAGAAAGCTGAAGACTGCTGTTGG
TTGCCATCATAGTCTGGCGCGGAAAGAGCAGCGCAAATGCACACCGCCTC
ACGCCGCACCATTCCCTGGTTTTCCCCGCCGCCCAAGGTGGTATATACGG
CAGCTGAAGCGGCCCTCAGATCCGTTACAAGACGGGGGGTGGAGAAGCAC
GAGTTAGGCTCCCGCAGAAATGTTTTTACCGATGTCCGGTGCCTTTCGTA
TAATCAACCCGCCCATCTTTCTCATGTTGACCGTTTCAGCCGTCATGCGC
GCCTGCCATCTTCACCGTTTCTCTCGCCCGCCGTTTACCTTGCCCGCCGA
ACCCAACCATTAAACCAGCGGCGATGCCGCATGCGCCTTCCACCTGGTGG
CGCGGCACCTTCAGCCAGCGCCACCACCTCGACCACTACCATCCCGTCCA
CAGCTAGCGCTGCTCCTCCTACCGTTTCTGCTTCTCCGTCATCGAGCCTG
TGGCCCTCCACCGCGGACCTGGTCGACGGTATCCTCGCCGGAAGCAGGGC
GTCCCTAAGCCGAGCAATCACACTAGGTGGGTTGGGGAAAACGGCAAGGG
GTGTTTTGGCAGAGAGGGGAGAGGGGGGGGAGGTGCGAAAAGGGCGAATT
TGGCTCGTAACGGTGGCATACGTCATAGCCACACGTGTCGTTGCGAGAAA
GGACGGGGTGTGTGGCGGTAGTGTACCTTTGAAAAGCGGGTGATATCCTG
TTTTTTCATGCATCTCTTTTCGGTGCGCCTGAGTGCGCTGTTGGTGCAAC
ATCAATCATCTTATTTTGCTGCCTGTCTACCACTCCTTCCGCTCGCCCCT
GTGAACTGGTTGGTCTCTACAAATCACGACGGGATCTACCCCCTACCAAC
AACGATGAGAAGTGGAATCACATCGCCTGGACCACCGTCGCCAAGCAGAG
CTCCTGCTCGACCGGCTACTCTCAGCTCGACCTCAGGCAGGAGCGCCGCC
GCCGCCGCCGCCGGTTTCCCAACCACCACCACCACCACCGCCCCCGCCAG
AAGAATCGGTCACCGACAGCGCAAGCGGTGGCAGCTGGAGCTCGAGCCTG
AGCACCCCGCCCCACAGCGGGACGACGGCAGCGGCGGCGGTGGCGGAGGG
ACTGAAGTCGTCGGGGCGAAGAGACCGCAGCAGCGGTCGGGCCGTGGCCG
CCACCGGTGACTTCCCGAAGCTGGGGATGAGGCTAGGGATCGCGGGGCCT
CCGGGGGCAGGCAAATCGTCGTTTATCGAGGTGATGAGAGGGGACAAATT
TAATTGTTTGGCGGCAGGGACTGCAATTTTGCGGTAGGGACAGATTTTTG
GGGTAGCTGTGGTGCTCACGTTCTCGGAGCCCGTTGTCGTTATAGTTTGT
GTTGACCATGCTACCGGTGGTTTTGATGCACAGCGTTGTTTGAATTGAAA
CGAGCAGATGCCTAAGGTATGATCCCCCCCCCCCCCCCCGCCGGCCTGCC
GCGTCGAGCTATTCCCCAGCTGATTCAGTGTGGTGCTTGTTCCGTTCGTT
TGCTTCTCATGTCGACCGCCTGCCTTGTGTGCGTGCACACGGAGGTGCTT
GGCAAGAGACTCACTTCTGCGGGTAATCGGGTAGCGGTGATCTCCATAGA
CCCTTCCAGCTCAAGAACAGGTGGATCGATACTGGGAGACAAGACGAGGA
TGGATGAGCTGTCTCGAGACCCAAGGTTCGTACACTAGATCACACACACA
CAGTTTTTGGCCAACGGCTCATGCTCAATACATTGTTGGTACATGTTTTT
CCTGTCTTCGGGTATGCATATGAATTTTCGGATTTTTTGGGCAAGGTATC
CTGGCTATGTGCACAGGAGGGAAAAAATTCAAGTATCGATAATCGAGAGT
TGCGTCTTTGATTGGGTTCGAGCTTTTCAGGAGACGTGTGCACGTCAACA
GCAGTGTTTTGTTTCCTGTAGCAGTCGCGCGGCTTTCTTGGCACGATGGA
TAAATTGCTACGTTGACTGAAAGTGGTAGGATGCAATTTCGAAATCGCGT
AGGTTCCTACGTTAGCCGTTGCTTCTTTTGTATAGAGAGGCATGCAAAAC
ATGAGTGCGCCCCGCCTAATGTGGGAACAATGCTCCCTCCTCTCGAGGAC
GCGTGGTCAATGGACTAATCGCTAAGGCATGCAAAACATAAGAGTACGCC
CCCTCGTTCACGTTGATTGTGTGTCTCTGTTGGCAGAAGGGACGATGTTC
TGTATCGGATTCCACGCAACAGCAAACTTTGTGTCACTTCAGGCCAGAAA
CATGAATCACTGCGCCCCCCCCCCCCGCGCATCCCCTCCTCCTGCAGCGC
ATTCGTCCGCGGCTGTCCGGCCAGAGGAGTACTGGGCGGCCTCTCTAGGT
ACACCCACGAAGTGGTGCTGCTGTGCCAGGTGGCGGGGTACGATCCTGTC
ATCGTCGAGACCGTCGGCCTAGGGCAAAACGAGGTACGGTCAAGCGAGGG
CCAGGGATACCGCAGGAGACGACACGCCCCCCCCAGGCTGCTTTTCATAG
CTCGATTGCTCCACAACTACGCTTGTGCCAACGCCAAAATGGGGGCTTTG
GAAGCGTCGTTGGAAGCGTCAAATCGAGGGCATTGCCGTAGACGTGTCGG
GGCTCTCGATCCACACCATCCACTTTGTTGTGGAGCGATGGCAGTCGACC
TGAGGGGGGTGCAATCTCTCCTCCTCTTAATAGTATGTACGTCAAACCCT
GATGCTGCTTGTTGTGCGAGGTGGTTGTTCGGCGGTAGAGCTCGAATCTC
TTTAAGACCCACCGGACCGGAGGTCATGCCGAATATTCGCCCAAACCAGG
CTCAACACAGTAAAGCGACGCACTACGTAGAATCGCTGAGGAGTGGGAGA
AAGGGACTACTGTAGCTTGGTGATGGAAACGGATTATCATCAGCCAAAGG
TTTCGGGGAGAGGGGCCGGTTGGGGGAAGCGAGCGCACTGCTACGTCGAA
ATATTTAACGAATGTTGGGCGGACTTAACAGGCACGTTTTTCTCGCAAAG
CGCGTCATGGCAAAAGCGCACGCAGTGCCAGTTTAATTTTTTGTCAGCTC
TTTTTCTCTCTTTTTCGCATGTGACTTATCTCCGATGCCCCATCTTTCTT
CTCTCACCTTCCTGCTTCCCGCCTCTATCTCTCCGTATGCATATACTCGT
CTGCCTAGTCTTCTCTTTCTCTCTCTCTCTTCCTCTCCCTCCTTGCCGGT
CTCTTTGCGTTTTTTTTTCTCTTCGTGCGTGTGGGTGTTTTTTCTTCCTG
CCGTTTGTTTCGTCGTCCCCTCGCCACTCCTCCCCTCCCATCCCCGACGA
CACGACGCTGGATATATTCTTTCATTCGTTCGCTTTAAGCATAGGTGGAG
GTGGAGCACACGGTGGACATGCTACTGCTGATGCTTCCCCCTGCAGGCGG
CGACGATTTGCAAGGTTAGGGGCCCAGCGTTCCAGCGATCTGTGAAGCGT
TTTCTGGCACAACGACGTGGTTGCCGCACTGCTTGTACCGTTAAAACACA
CGCCTTGTCTTTCCTTCTGTGTTCATGGGTGTTGTGTGTGTTTTCGTCCT
ATCTACTATGGCGACAGCCCCCCATTTTTTGTGGCGAGATGTGTGCTACA
CGTGTTTCAGAGTACGTAGAGTACTACACTTTTCAATGTAGTTTAGCGCC
CGAGTTTTGGGGTGAAAGAAGAGTACAGCAGTAGTGATTAGCGAACAAGC
CCAGTTGGTTGGTCTTTCGCTGCTCCTGAACAGTTGCTTGATGATGACAA
AACGCAACGTCTTCAACAATCAGGATCGAAGAAGGGGATAGTGGAGGTCG
CCGACGCCATCGTGGTCAACAAGTCGGACGGTGATCTGGAGAAGTGAGTG
GATGTTGAGAGGAAACGGAAGTGTACGAGAAGGAGCAATAATTCACATCT
CTTTGGTGATGACGAGACGCTGAAGACAAAAGAAAGGGAGGGAAGGAACC
CTGGACATTAGGATTTGTCAAGTTTTCTTCGGGCGCGCTTGATCGAAGGA
AGGCCTGTCGGAGCTCCCTCTCCCACCTTCCTGCTCCACGAAACCCCTGA
CTAACTTGTCGCAACACCTTGGGCGAGAGGAAACAAAGGCGAAGTTTTTG
TAGCGTGTAGAAGTAAAGACATGGATGGCGACGCACGATGGTTACGAGGA
TCTTCAGGCGTCAACCCTAGGAGTGCAGCACCTAGTTGCCAACCACCACT
TCAACGTTTTTTTTTGTTTATCCGTGTCGAAAACGAAAAAAAGAGCGGCT
CGAGCCACCGCCAGCGACTACTCGGCGGCGCTCGGCTACGCGAGGAGAAA
GCTGAGCTGCTGGGCTCCGCCGGTGTTGCGCTGCTCGGCGCTGCGGTCAG
AGGGTGTCGACCAAGTGTGGGAGCAGGCAAGGCGCTTGCACGTTCACCGG
CCATTTCTTTCCTTTGATGTTGCACAATAAATCCATATATTTTCATAGAT
AAGGGTCTACGATAAATTGGTGATTTTGTTATAGCGTTAACGGAGCGCTA
CCTGTGTTTCCACAACTTGCCAAGAAGCACTCAGTGATATCTACCCTGCG
GGCAACAGGAGAAATTGTTTTCTGTCTTTGTGGGTCACAACTCTACGAAC
CTAACCTACTACGTCTTTCACCACAAATCCTACACCCTTGGAGAACGTTT
CCCACGTTCTCCTCGGAGAGATTGTCTCTCGGACCGATGTCGATGTCGCC
AACGCTCTCCGAGCCACGAGGAAGCGTTCAACGTTATACGAGAAACCTAG
ATCCGTCTTCCACGAGGCTTCCTCGGATATTTGACCGTGACTTTTGTCCG
AGAGGGATGCGAGGGTGTTGCCCTCGCACACCTCTCCCTCTTAATTTCTG
TCTCCATGTCTCCATCTCATCTCGAGATACTGCCTCTTTACCGAGCATCA
CAGCCTGTCCGGTGATCGAAAACCCCGCCCCATATCTGCGACCGTTGCCT
GAGTGGAACGCCTGCGGATACAGCGTTAGAGATTCGCACCTCCCTGCGGT
GTCTTTGAGTTTGAATCCTTATTGGCGTCAGCCGGCAGTTCTTGCCTGCA
CGTTACTCGAAACACCCCATGTCCACTCGTGGCGTCAACGTATCCGAGGG
GGGGACGCGCTGGCGACCACCCTCCCGGCGAACGGCCCGAAAACTTCAAT
TCTGCCGAAGGAGGCGTGATCTCCGTCAACGGTGCTGCCGGCGGCAACTC
CGATGCTGGGGGTAACGCCGCCGGAGAGAGCGCTGGAGCGAGAGTGCTGG
AACCGTCGAACGCACCGCGAAGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig924:462..6535-

>mRNA_Ecto-sp13_S_contig924.20818.1 ID=mRNA_Ecto-sp13_S_contig924.20818.1|Name=mRNA_Ecto-sp13_S_contig924.20818.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig924:462..6535- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGGTCTTCCCCGCTGGACAATGGCTATCGCCTCGAAACAGCGGCG
ATGCCGCATGCGCCTTCCACCTGGTGGCGCGGCACCTTCAGCCAGCGCCA
CCACCTCGACCACTACCATCCCGTCCACAGCTAGCGCTGCTCCTCCTACC
GTTTCTGCTTCTCCGTCATCGAGCCTGTGGCCCTCCACCGCGGACCTGGT
CGACGGTATCCTCGCCGGAAGCAGGGCGTCCCTAAGCCGAGCAATCACAC
TAGTGGAATCACATCGCCTGGACCACCGTCGCCAAGCAGAGCTCCTGCTC
GACCGGCTACTCTCAGCTCGACCTCAGGCAGGAGCGCCGCCGCCGCCGCC
GCCGGTTTCCCAACCACCACCACCACCACCGCCCCCGCCAGAAGAATCGG
TCACCGACAGCGCAAGCGGTGGCAGCTGGAGCTCGAGCCTGAGCACCCCG
CCCCACAGCGGGACGACGGCAGCGGCGGCGGTGGCGGAGGGACTGAAGTC
GTCGGGGCGAAGAGACCGCAGCAGCGGTCGGGCCGTGGCCGCCACCGGTG
ACTTCCCGAAGCTGGGGATGAGGCTAGGGATCGCGGGGCCTCCGGGGGCA
GGCAAATCGTCGTTTATCGAGGTGCTTGGCAAGAGACTCACTTCTGCGGG
TAATCGGGTAGCGGTGATCTCCATAGACCCTTCCAGCTCAAGAACAGGTG
GATCGATACTGGGAGACAAGACGAGGATGGATGAGCTGTCTCGAGACCCA
AGCGCATTCGTCCGCGGCTGTCCGGCCAGAGGAGTACTGGGCGGCCTCTC
TAGGTACACCCACGAAGTGGTGCTGCTGTGCCAGGTGGCGGGGTACGATC
CTGTCATCGTCGAGACCGTCGGCCTAGGGCAAAACGAGGTGGAGGTGGAG
CACACGGTGGACATGCTACTGCTGATGCTTCCCCCTGCAGGCGGCGACGA
TTTGCAAGGATCGAAGAAGGGGATAGTGGAGGTCGCCGACGCCATCGTGG
TCAACAAGTCGGACGGTGATCTGGAGAAAGCGGCTCGAGCCACCGCCAGC
GACTACTCGGCGGCGCTCGGCTACGCGAGGAGAAAGCTGAGCTGCTGGGC
TCCGCCGGTGTTGCGCTGCTCGGCGCTGCGGTCAGAGGGTGTCGACCAAG
TGTGGGAGCAGGCAAGGCGCTTGCACGTTCACCGGCCATTTCTTTCCTTT
GATGTTGCACAATAA
back to top