mRNA_Ecto-sp13_S_contig923.20808.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig923.20808.1
Unique NamemRNA_Ecto-sp13_S_contig923.20808.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: D7FPL8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL8_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 1.240e-65
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQFH 334
            QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQFH
Sbjct:  372 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQFH 482
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: A0A6H5L5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A5_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.310e-56
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENK 298
            QMIVNCKDCITGKD+MDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENK
Sbjct:  121 QMIVNCKDCITGKDNMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENK 219
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: A0A835YLK0_9STRA (Dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK0_9STRA)

HSP 1 Score: 179 bits (455), Expect = 3.870e-50
Identity = 87/110 (79.09%), Postives = 98/110 (89.09%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQF 331
            QMI NCK C+ G DS+DALW+KDP+ELVR+LESCLKLNEA+QEQYRLTK KL + P+GKQFDF+E E+FGKFDLFCRRVIKLIDMFSTIDQF SLSEN+LEGME LI  F
Sbjct:  395 QMIANCKSCVLGGDSVDALWDKDPEELVRRLESCLKLNEAYQEQYRLTKAKLGEAPKGKQFDFNEMEVFGKFDLFCRRVIKLIDMFSTIDQFTSLSENRLEGMEPLIAHF 504
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: A0A482S391_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S391_9ARCH)

HSP 1 Score: 171 bits (433), Expect = 3.490e-47
Identity = 83/111 (74.77%), Postives = 99/111 (89.19%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQFH 334
            QMI NCK  I  ++ +D+LW+ DPQELVR+LESCLKLNEA+QEQYR+TK+KL+QTP+GKQF F+E +IFGKFDLFCRRV KLI MFSTIDQFNSLS+NKLEGM+ LI+QFH
Sbjct:  293 QMIANCKMHIMNENELDSLWDSDPQELVRKLESCLKLNEAYQEQYRITKSKLEQTPKGKQFSFNEMQIFGKFDLFCRRVYKLIYMFSTIDQFNSLSKNKLEGMDKLIEQFH 403
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: A0A6A4ZH60_9STRA (DHC_N1 domain-containing protein (Fragment) n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZH60_9STRA)

HSP 1 Score: 158 bits (399), Expect = 7.210e-44
Identity = 74/111 (66.67%), Postives = 95/111 (85.59%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQFH 334
            QMI NCK+CITG ++ + +W K+P+ELVR L+SCLKLNEA+Q+QYR TK KL   P+GKQF+F+E +IFGKFDLFCRR+IKLIDMF+TI QF+SL ++KLEGME LI +F+
Sbjct:  367 QMITNCKNCITGGETFEVMWTKEPEELVRNLDSCLKLNEAYQQQYRATKDKLFSMPKGKQFEFNEMQIFGKFDLFCRRIIKLIDMFTTIHQFSSLGQHKLEGMEELIGKFN 477
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: A0A7S2GB58_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GB58_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.100e-43
Identity = 73/89 (82.02%), Postives = 81/89 (91.01%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTI 268
            QMIVNCK+ IT   S DALWEK+PQELVRQLESCLKL+EA+QEQYRLTK KLQQ P+GKQFDF+E +IFGKFDLFCRR+IKLIDMFSTI
Sbjct:   31 QMIVNCKNSITEGGSFDALWEKNPQELVRQLESCLKLSEAYQEQYRLTKKKLQQMPKGKQFDFNEMQIFGKFDLFCRRIIKLIDMFSTI 119
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: K3WIV7_GLOUD (Uncharacterized protein n=36 Tax=Oomycota TaxID=4762 RepID=K3WIV7_GLOUD)

HSP 1 Score: 160 bits (404), Expect = 2.890e-43
Identity = 75/111 (67.57%), Postives = 96/111 (86.49%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQFH 334
            QMI NCK C+TG ++ + +W+KDP+ELVR L+SCLKLNEA+Q+QYR+TK KL  TP+GKQF+F+E +IFGKFDLFCRRV KLIDMF+TI QF+SL ++KLEGME LI +F+
Sbjct:  415 QMITNCKHCVTGGETYEVMWDKDPEELVRHLDSCLKLNEAYQQQYRVTKDKLFATPKGKQFEFNEMKIFGKFDLFCRRVTKLIDMFTTIHQFSSLGQHKLEGMEDLIAKFN 525
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: A0A662Y1W2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1W2_9STRA)

HSP 1 Score: 159 bits (403), Expect = 3.860e-43
Identity = 74/111 (66.67%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQFH 334
            QMI NCK C+TG ++ + +WEK+P+ELVR L+SCLKLNEA+Q+QYR+TK KL  TP+GKQF+F+E +IFGKFDLFCRRV+KLIDMF+TI QF+SL +++LEGME LI +F+
Sbjct:  399 QMITNCKQCVTGGETYEVMWEKEPEELVRHLDSCLKLNEAYQQQYRVTKDKLFATPKGKQFEFNEMKIFGKFDLFCRRVMKLIDMFTTIHQFSSLGQHRLEGMEDLIAKFN 509
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: H3GWH2_PHYRM (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=H3GWH2_PHYRM)

HSP 1 Score: 159 bits (403), Expect = 3.920e-43
Identity = 74/111 (66.67%), Postives = 97/111 (87.39%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQFH 334
            QMI NCK C+TG ++ + +W+KDP+ELVR L+SCLKLNEA+Q+QYR+TK KL  TP+GKQF+F+E +IFGKFDLFCRRV+KLIDMF+TI QF+SL +++LEGME LI +F+
Sbjct:  395 QMITNCKHCVTGGETYEVMWDKDPEELVRHLDSCLKLNEAYQQQYRVTKDKLFATPKGKQFEFNEMKIFGKFDLFCRRVMKLIDMFTTIHQFSSLGQHRLEGMEDLIAKFN 505
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BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Match: A0A6A4Z077_9STRA (DHC_N1 domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4Z077_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.050e-43
Identity = 74/111 (66.67%), Postives = 95/111 (85.59%), Query Frame = 2 
Query:    2 QMIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTKLQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLEGMEGLIDQFH 334
            QMI NCK+CITG ++ + +W K+P+ELVR L+SCLKLNEA+Q+QYR TK KL   P+GKQF+F+E +IFGKFDLFCRR+IKLIDMF+TI QF+SL ++KLEGME LI +F+
Sbjct:  131 QMITNCKNCITGGETFEVMWTKEPEELVRNLDSCLKLNEAYQQQYRATKDKLFSMPKGKQFEFNEMQIFGKFDLFCRRIIKLIDMFTTIHQFSSLGQHKLEGMEELIGKFN 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig923.20808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL8_ECTSI1.240e-65100.00Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5L5A5_9PHAE1.310e-5698.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLK0_9STRA3.870e-5079.09Dynein heavy chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482S391_9ARCH3.490e-4774.77Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6A4ZH60_9STRA7.210e-4466.67DHC_N1 domain-containing protein (Fragment) n=2 Ta... [more]
A0A7S2GB58_9STRA2.100e-4382.02Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
K3WIV7_GLOUD2.890e-4367.57Uncharacterized protein n=36 Tax=Oomycota TaxID=47... [more]
A0A662Y1W2_9STRA3.860e-4366.67Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
H3GWH2_PHYRM3.920e-4366.67Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
A0A6A4Z077_9STRA4.050e-4366.67DHC_N1 domain-containing protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig923contigEcto-sp13_S_contig923:7050..8275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score223.4
Seed ortholog evalue5.2e-56
Seed eggNOG ortholog2880.D7FPL8
Model size334
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005623,GO:0005929,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0034622,GO:0035082,GO:0036158,GO:0040011,GO:0042995,GO:0043226,GO:0043933,GO:0044085,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036
Exons4
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size330
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464193.9665833-CDS-Ecto-sp13_S_contig923:7049..70851681464193.9665833-CDS-Ecto-sp13_S_contig923:7049..7085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig923 7050..7085 -
1681464193.980491-CDS-Ecto-sp13_S_contig923:7383..74721681464193.980491-CDS-Ecto-sp13_S_contig923:7383..7472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig923 7384..7472 -
1681464193.9938023-CDS-Ecto-sp13_S_contig923:7863..80051681464193.9938023-CDS-Ecto-sp13_S_contig923:7863..8005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig923 7864..8005 -
1681464194.0068667-CDS-Ecto-sp13_S_contig923:8208..82711681464194.0068667-CDS-Ecto-sp13_S_contig923:8208..8271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig923 8209..8271 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464194.0221653-UTR-Ecto-sp13_S_contig923:8271..82751681464194.0221653-UTR-Ecto-sp13_S_contig923:8271..8275Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig923 8272..8275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig923.20808.1prot_Ecto-sp13_S_contig923.20808.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig923 7050..8271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig923.20808.1

>prot_Ecto-sp13_S_contig923.20808.1 ID=prot_Ecto-sp13_S_contig923.20808.1|Name=mRNA_Ecto-sp13_S_contig923.20808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
MIVNCKDCITGKDSMDALWEKDPQELVRQLESCLKLNEAHQEQYRLTKTK
LQQTPRGKQFDFSETEIFGKFDLFCRRVIKLIDMFSTIDQFNSLSENKLE
GMEGLIDQFH
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mRNA from alignment at Ecto-sp13_S_contig923:7050..8275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig923.20808.1 ID=mRNA_Ecto-sp13_S_contig923.20808.1|Name=mRNA_Ecto-sp13_S_contig923.20808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1226bp|location=Sequence derived from alignment at Ecto-sp13_S_contig923:7050..8275- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGATGATCGTGAACTGCAAAGACTGCATCACGGGCAAGGACAGCATGG
ACGCTCTCTGGGAAAAGGTGTGGGAGACGGCAGTTCGCGGCAACTGGAGC
CATTACCCTCATGCTTCTTGGTTTGGCTAGAGACACATTGTCCGAACACC
GCCTCCTGCAGTACATGGGGCCAACGCCACATAAGACACGAAGGCAGCCA
TCCGGCGGCGGCTTACGCGACAATGGGTGCTGCCTATCCAACACTTTTGC
AATCACGTCTCCTTTCGCAGGACCCCCAAGAACTAGTCCGGCAGCTGGAA
TCGTGCCTCAAGCTCAACGAGGCCCACCAGGAACAGTACCGTCTGACCAA
GACTAAACTGCAGCAGACCCCTAGGGGGAAGCAGTTCGACTTCAGCGAGA
CGGAAATATTTGGTGAGACCAACTGAGATATTTCACAGTGAAAGGTACAC
GGAAGGGAGAGAAACATATGGGGGCGGCGGGAATTGCGGCAGATACCACA
GTCAATGATAAAAGTGGGGTACGATATTGACGATATTCGAGGGGTGGGGA
GTGCACACGGCATGCTGGCCCTGTCCACCGGTTCGAAAGTATGAAAGGCG
TCATCACAGGGGAGTGCGACGCATGTTTTGGCGACGGTCGTACAGACAGA
CCTGGTCTATGGCAAGTTGTGATGATTGCAAGGCTCGTTAAATTTTGACG
TTTGTTTGTTTGACTTTTCTTGTGGACTCGTTCGAATGTGCTCGAATCTG
CCCAAGATCAACAACCTCTGTTGAATTTTGTCCTGATTGATGAACCGCCA
CAGGAAAATTCGACCTGTTCTGTCGAAGGGTGATCAAGCTCATTGACATG
TTCAGCACCATCGACCAGTTTAACTCGCTCTCGGAGAACAAGGTACGGCA
AGTGTTGGGGGCGAACCTTTACGTCGGACGGAAGCACAGGAGGCACGAAG
ACGAACATATGGATTTTAAGTCAATGGTTTGGGCTGAAGAGTCTCTAAGG
TTAACCTGTAGGAGCATGCTACCGAAAGAAAATGCTTTTCTCTGCCCCCC
TCCGGCATTTAAGGGAAAAATGAAGGTCGAAACCAGTCGTATCCGCTCGA
TTGTGGGTGGCGTTCGGCTGAACGATGTCTAGCTTGCTCTCCGTTCGTTT
CCCGATGTTGAAATAATCCCTTTTGCCGCTCCGCCTGAAGTTGGAAGGAA
TGGAAGGCCTTATCGACCAGTTCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig923:7050..8275-

>mRNA_Ecto-sp13_S_contig923.20808.1 ID=mRNA_Ecto-sp13_S_contig923.20808.1|Name=mRNA_Ecto-sp13_S_contig923.20808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig923:7050..8275- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGTGAACTGCAAAGACTGCATCACGGGCAAGGACAGCATGGACGC
TCTCTGGGAAAAGGACCCCCAAGAACTAGTCCGGCAGCTGGAATCGTGCC
TCAAGCTCAACGAGGCCCACCAGGAACAGTACCGTCTGACCAAGACTAAA
CTGCAGCAGACCCCTAGGGGGAAGCAGTTCGACTTCAGCGAGACGGAAAT
ATTTGGAAAATTCGACCTGTTCTGTCGAAGGGTGATCAAGCTCATTGACA
TGTTCAGCACCATCGACCAGTTTAACTCGCTCTCGGAGAACAAGTTGGAA
GGAATGGAAGGCCTTATCGACCAGTTCCAC
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