mRNA_Ecto-sp13_S_contig9222.20802.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9222.20802.1
Unique NamemRNA_Ecto-sp13_S_contig9222.20802.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9222.20802.1 vs. uniprot
Match: D7FIH7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH7_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 1.030e-94
Identity = 146/152 (96.05%), Postives = 150/152 (98.68%), Query Frame = 3 
Query:    3 GSLRDTAKGRSSTLSEVLGQTRHLWTKGTAECPQVARAKGGLITVFGAAEDLLLFLCGSGECDELTLADMLSTLAKVVVALCRQGGKHQRATETAFLSSSGTSSIYSKACLVIDEMIPGGILESLDSDAILSSIKLQKPTSAAPVAGSKKGR 458
            GSLRDTAKGRSSTLSEVLGQTRHLWTKGT+ECPQVARAKGGLI VFGA EDLLLFLCGSGECDELTLADML+TLAKV+VALCRQGGKHQRATETAFLSS+GTSSIYSKACLVIDEMIPGGILESLDSDAILSSIKLQKPTSAAPVAGSKKGR
Sbjct:   42 GSLRDTAKGRSSTLSEVLGQTRHLWTKGTSECPQVARAKGGLIIVFGAVEDLLLFLCGSGECDELTLADMLATLAKVIVALCRQGGKHQRATETAFLSSNGTSSIYSKACLVIDEMIPGGILESLDSDAILSSIKLQKPTSAAPVAGSKKGR 193
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BLAST of mRNA_Ecto-sp13_S_contig9222.20802.1 vs. uniprot
Match: A0A835YRG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.960e-18
Identity = 57/140 (40.71%), Postives = 78/140 (55.71%), Query Frame = 3 
Query:    9 LRDTAKGRSSTLS----EVLGQTRHLWTKGTAECPQVARAKGGLITVFGAAEDLLLFLCGSGECDELTLADMLSTLAKVVVALCRQGG-KHQRATETAFLSSSGTSSIYSKACLVIDEMIPGGILESLDSDAILSSIKLQ 413
            L D A  R   +     EV  QTR +W +      QVAR    +I ++    DLL+F CG  +CDELTL+D++  L  V+  LC     K  R TE+ +L    T   Y+K  L +DEM+PGGILE+LD DA+LS  K++
Sbjct:   33 LGDVASDREQCMQWWEDEVRQQTREMW-QFAHTANQVARGADDVIIIYRRIGDLLVFACGRDDCDELTLSDVVDCLGGVIATLCEDSSAKGARPTES-WLMIGDT---YAKVALAVDEMMPGGILEALDPDAVLSMTKMR 167
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BLAST of mRNA_Ecto-sp13_S_contig9222.20802.1 vs. uniprot
Match: A0A061QRI4_9CHLO (Coatomer subunit zeta n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QRI4_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 2.500e-5
Identity = 28/100 (28.00%), Postives = 50/100 (50.00%), Query Frame = 3 
Query:  120 GGLITVFGAAEDLLLFLCGSGECDELTLADMLSTLAKVVVALCRQGGKHQRATETAFLSSSGTSSIYSKACLVIDEMIPGGILESLDSDAILSSIKLQKP 419
            G    V+    D++LFL GSGE DEL L+ ++  +   + A  ++        E            Y+K C+ +DE++  G+L+ +D + I  ++KL+ P
Sbjct:   61 GDACIVYSPVADIILFLMGSGEYDELMLSSIIRVIKDALKATLKKSPSEAAVCEK-----------YAKVCVTLDEVVNEGVLDMVDPELIRKAVKLKAP 149
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BLAST of mRNA_Ecto-sp13_S_contig9222.20802.1 vs. uniprot
Match: F0ZIR6_DICPU (Clat_adaptor_s domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZIR6_DICPU)

HSP 1 Score: 53.1 bits (126), Expect = 4.810e-5
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 3 
Query:  123 GLITVFGAAEDLLLFLCGSGECDELTLADMLSTLAKVVVALCRQGGKHQRATETAFLSSSGTSSIYSKACLVIDEMIPGGILESLDSDAILSSIKLQ 413
            G ITVF    DL+LFLCGS E DEL L+D+L  + + +  +C++ G     TE  F+          K  L +DE+I  G L+ +  ++I +   L+
Sbjct:   58 GYITVFTGVGDLMLFLCGSDEYDELALSDILIPIVESLKDICKKKG----VTEAYFIEQ------IPKFILYLDEIIQRGHLDQVQLESIQNYFALK 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9222.20802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIH7_ECTSI1.030e-9496.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YRG5_9STRA1.960e-1840.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A061QRI4_9CHLO2.500e-528.00Coatomer subunit zeta n=2 Tax=Tetraselmis sp. GSL0... [more]
F0ZIR6_DICPU4.810e-535.05Clat_adaptor_s domain-containing protein n=1 Tax=D... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9222contigEcto-sp13_S_contig9222:4601..6445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size913
Hectar predicted targeting categorymitochondrion
Exons3
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464193.5036974-UTR-Ecto-sp13_S_contig9222:4600..50521681464193.5036974-UTR-Ecto-sp13_S_contig9222:4600..5052Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9222 4601..5052 -
1681464193.540889-UTR-Ecto-sp13_S_contig9222:5855..59451681464193.540889-UTR-Ecto-sp13_S_contig9222:5855..5945Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9222 5856..5945 -
1681464193.5518312-UTR-Ecto-sp13_S_contig9222:6326..64451681464193.5518312-UTR-Ecto-sp13_S_contig9222:6326..6445Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9222 6327..6445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464193.5157945-CDS-Ecto-sp13_S_contig9222:5052..52291681464193.5157945-CDS-Ecto-sp13_S_contig9222:5052..5229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9222 5053..5229 -
1681464193.5295086-CDS-Ecto-sp13_S_contig9222:5780..58551681464193.5295086-CDS-Ecto-sp13_S_contig9222:5780..5855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9222 5781..5855 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9222.20802.1prot_Ecto-sp13_S_contig9222.20802.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9222 5053..5855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9222.20802.1

>prot_Ecto-sp13_S_contig9222.20802.1 ID=prot_Ecto-sp13_S_contig9222.20802.1|Name=mRNA_Ecto-sp13_S_contig9222.20802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MLSTLAKVVVALCRQGGKHQRATETAFLSSSGTSSIYSKACLVIDEMIPG
GILESLDSDAILSSIKLQKPTSAAPVAGSKKGR*
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mRNA from alignment at Ecto-sp13_S_contig9222:4601..6445-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9222.20802.1 ID=mRNA_Ecto-sp13_S_contig9222.20802.1|Name=mRNA_Ecto-sp13_S_contig9222.20802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1845bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9222:4601..6445- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGCTCGTTGAGAGATACCGCCAAGGGTCGAAGCTCAACCCTTTCGGAA
GTGCTGGGGCAGACGAGGCATCTATGGACGAAGGGCACGGCAGAGTGCCC
TCAGGTCGCCCGGGCTAAGGTGAGGATTATGCATCCGTTGGGATAAACCT
GCTGTCTTCTTGGAGTAACCTCCTCAGAGATACACACGCAATCATGCCTT
GAATAGAGCCAGCCCGAACAGCGGTACAACATCCGCTACCTTCGACGGCA
GGGGTGTCCGCTACCTGAATGGCCACCGTATAAACATAGGAGGGTGGCTC
CATGGACAGCCGCATTCCCGCTCCCTTCCTCTTCTTAGCATTGTTACCAT
AGGAAAATGATCAGTGCTTTGTCCCAGCTTGTTTGTTTCGTCCTTGACAA
TCCAACCCACAACTCCGTAAACAAACTACATCAGTCATTGCGCTGCTCAA
ACACACCACGCACGGAATGGCAATGCTTGTGGGTAAATTGCGCATGGCAG
GGAGGGCTGATCACTGTGTTTGGAGCAGCAGAAGATCTCCTCCTATTCCT
GTGCGGCTCTGGGGAATGTGACGAGCTCACTTTGGCCGACATGCTGTCAA
CGCTTGCGAAGGTCGTTGTGGCCTTGTGCAGACAGGGCGGCAAACACCAA
AGGGCCACGGAAACGGTGGGCACTGCGTAACGATATGTTCTCTGTTTGGC
AAGGGCTAGTTGACGTCAGCTTACACATGATGCAGCGAGAGTATCGCGTA
TTGTGTCAAAGCGGAGGGTCTATTTCGCGTTTACTTAAACGAGTGTACGA
TGTTCGTGTTGACTGCACGATTGTGTCGCACGTGTGTCTTGCACTAGAAT
ATCACGATGATCATGGCGATAAACGTGGAGCGAAACCTCGCGGTGAAATA
CATACCAATGCAATAGTGCGATCATCAGTACACAACCATTTGTTCGGCTC
TAAAGTAGTAGTGCATGTGCACGTCAAGGGTGTACCGAGATCCAGCCCAG
CTCAATGTGCCAATGTATTTTGCTTTTGTTGACTTTTTGTGTTGACTCGG
TCGTACAAATCGCAAGCCCTTCGGGCATACCAAATGTCCATGTACGTCAC
TCCAAGTTGCTTTCTCCAGCTTGCTCCTTTCCACTACACGCAATGTTGCG
CCTCACTCTCTTGGCGTTGCCGTGTCCGTAATGACAACTCGCGGCGGTGT
GAATGATCAAGAGCAGGCTTTCCTGTCGAGCAGCGGCACGAGCAGCATCT
ACAGCAAAGCCTGCCTCGTCATCGACGAAATGATTCCCGGGGGTATCCTG
GAATCCCTAGACTCTGACGCCATCTTGAGTTCTATCAAACTGCAGAAACC
CACCTCAGCAGCACCGGTGGCCGGCTCGAAAAAGGGGAGATGATACGTTG
TCTGTTTATTCCCCCGCGTTTACTTCCGTCATCTGGAGCCAAGCTTACGA
AGCCGGCTACAGTCAACTTGACGCCGTAGGCAAAATTGGTATTCTTGTCA
TCGCTGGGCAAGTTCGTTTGAGTATCCTGTACAGTAGTAGCAGTGCGGTT
GGTTTGCTAAGGTGTGGGGTAGCAGTTCTTGAGCTGCGAGCTAGGCTGCC
GTTCTTTCTCAAGTTTACATGCGTCTCTTGGAATAGACGCGTGATGTGCG
TGTTGGTATTGGTTTTCCATCAGGTTTAGGGAGGATAAAGAGCTGGTGGC
GTGGAGTGTGCACAACTCATCGAAAGGACGAGCTTCCGTCTACAGGGAGC
AGAAAAGAAGGTACACTTCCTTACCCCACGCTTACACTGGTGGTCTTTGT
ATTCCGCAACAAAGAGGCTATGGTGCAGTACATCTTTGCACCTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9222:4601..6445-

>mRNA_Ecto-sp13_S_contig9222.20802.1 ID=mRNA_Ecto-sp13_S_contig9222.20802.1|Name=mRNA_Ecto-sp13_S_contig9222.20802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9222:4601..6445- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTCAACGCTTGCGAAGGTCGTTGTGGCCTTGTGCAGACAGGGCGG
CAAACACCAAAGGGCCACGGAAACGGCTTTCCTGTCGAGCAGCGGCACGA
GCAGCATCTACAGCAAAGCCTGCCTCGTCATCGACGAAATGATTCCCGGG
GGTATCCTGGAATCCCTAGACTCTGACGCCATCTTGAGTTCTATCAAACT
GCAGAAACCCACCTCAGCAGCACCGGTGGCCGGCTCGAAAAAGGGGAGAT
GA
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