mRNA_Ecto-sp13_S_contig92141.20796.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig92141.20796.1
Unique NamemRNA_Ecto-sp13_S_contig92141.20796.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: A0A6H5KRU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRU5_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.620e-30
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 GTEDLGMRERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDP 165
            GTEDLGMRERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDP
Sbjct:  117 GTEDLGMRERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDP 171          
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: A0A6H5JCH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH5_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.840e-8
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1
Query:   22 RERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDP 165
            +E++  +  +F  NLGKVI TLREDYP +  +P  FDI+T +++LRDP
Sbjct:  100 KEKEKREQAEFNTNLGKVIDTLREDYPTMLDEPLNFDIYTPDLQLRDP 147          
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: A0A7S0PU43_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PU43_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 1.890e-8
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   37 GKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRD 162
            G+  +FE+N G+VI TLR DYPR+F D P   IF E++ELRD
Sbjct:   86 GRPSEFELNQGRVIDTLRYDYPRLFVDKPDLSIFREDVELRD 127          
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: A0A836CIZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.270e-8
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   40 KSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDP 165
            ++PDFE NLGKVI TLR DYP +  +P  + I+T++I ++DP
Sbjct:   36 RNPDFEPNLGKVIDTLRSDYPELLNEPLDYSIYTDDITVKDP 77          
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: A0A7J7CGB3_TRIWF (Uncharacterized protein n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CGB3_TRIWF)

HSP 1 Score: 53.5 bits (127), Expect = 6.290e-7
Identity = 23/52 (44.23%), Postives = 38/52 (73.08%), Query Frame = 1
Query:   16 GMRE-RDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPV 168
            G R+ +++ +  D+ VNLG  I TLRED+P++F+   +FDI+ ++I LRDP+
Sbjct:   75 GSRQSKEEEEKQDYYVNLGYAIRTLREDFPQLFYRELSFDIYRDDIVLRDPI 126          
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: A0A6T6C620_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6C620_9RHOD)

HSP 1 Score: 53.1 bits (126), Expect = 1.060e-6
Identity = 23/44 (52.27%), Postives = 28/44 (63.64%), Query Frame = 1
Query:   37 GKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPV 168
            G+ PD+  N+GKVI TLR DYP I    P F I+T+ I  RD V
Sbjct:  169 GRKPDYHANVGKVIETLRADYPEILTRDPDFSIYTDNILFRDRV 212          
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: D8LJ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ76_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.460e-6
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   25 ERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDP 165
            E++  +  +F  NLGKVI TLREDY  +  +P  F+I+T +++LRDP
Sbjct:   13 EKEKREQTEFNTNLGKVIDTLREDYATMLDEPLNFEIYTPDLQLRDP 59          
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: A0A5A7RJQ9_STRAF (Golgin candidate n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7RJQ9_STRAF)

HSP 1 Score: 51.2 bits (121), Expect = 5.240e-6
Identity = 20/46 (43.48%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   31 DDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPV 168
            D+ K  D+ VN G  I TLRE++P++F++  +FDI+ E+I  +DP+
Sbjct:   84 DEEKKNDYYVNTGYAIRTLREEFPKLFYEELSFDIYREDIVFKDPL 129          
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: A0A078HXF8_BRANA ((rape) hypothetical protein n=5 Tax=Brassica TaxID=3705 RepID=A0A078HXF8_BRANA)

HSP 1 Score: 50.4 bits (119), Expect = 7.700e-6
Identity = 22/50 (44.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   19 MRERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPV 168
            +RE DD +S  + VN+G  +  LRE+ P +F+  P FDI+ ++I LRDP+
Sbjct:   64 IREEDDKQS--YYVNMGHAVRCLREELPSLFYKEPNFDIYRDDIVLRDPL 111          
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Match: D8SRX9_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SRX9_SELML)

HSP 1 Score: 49.7 bits (117), Expect = 8.630e-6
Identity = 18/40 (45.00%), Postives = 29/40 (72.50%), Query Frame = 1
Query:   49 DFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPV 168
            D+ VN+G  I +LR++ P +F+ PP FDI+ ++I  RDP+
Sbjct:    2 DYHVNVGYAIRSLRDELPGMFYKPPTFDIYRDDITFRDPL 41          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92141.20796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KRU5_9PHAE6.620e-30100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JCH5_9PHAE1.840e-850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0PU43_9EUKA1.890e-857.14Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A836CIZ0_9STRA8.270e-852.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7J7CGB3_TRIWF6.290e-744.23Uncharacterized protein n=1 Tax=Tripterygium wilfo... [more]
A0A6T6C620_9RHOD1.060e-652.27Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
D8LJ76_ECTSI1.460e-646.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5A7RJQ9_STRAF5.240e-643.48Golgin candidate n=1 Tax=Striga asiatica TaxID=417... [more]
A0A078HXF8_BRANA7.700e-644.00(rape) hypothetical protein n=5 Tax=Brassica TaxID... [more]
D8SRX9_SELML8.630e-645.00Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92141contigEcto-sp13_S_contig92141:14..181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score106.7
Seed ortholog evalue3.2e-21
Seed eggNOG ortholog2880.D8LGI3
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Uncharacterized conserved protein (DUF2358)
EggNOG OGs2CYHV@1,2S4H3@2759
Cds size150
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464193.0390503-CDS-Ecto-sp13_S_contig92141:13..1631681464193.0390503-CDS-Ecto-sp13_S_contig92141:13..163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig92141 14..163 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464193.052302-UTR-Ecto-sp13_S_contig92141:163..1811681464193.052302-UTR-Ecto-sp13_S_contig92141:163..181Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig92141 164..181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92141.20796.1prot_Ecto-sp13_S_contig92141.20796.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig92141 14..163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig92141.20796.1

>prot_Ecto-sp13_S_contig92141.20796.1 ID=prot_Ecto-sp13_S_contig92141.20796.1|Name=mRNA_Ecto-sp13_S_contig92141.20796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MRERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPV
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mRNA from alignment at Ecto-sp13_S_contig92141:14..181-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig92141.20796.1 ID=mRNA_Ecto-sp13_S_contig92141.20796.1|Name=mRNA_Ecto-sp13_S_contig92141.20796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92141:14..181- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCACGGAGGACTTGGGCATGAGAGAGAGAGACGACGGCAAAAGCCCCGA CTTTGAGGTGAACCTGGGCAAGGTGATCTCCACGCTGAGGGAGGACTACC CGCGGATATTCTTCGACCCTCCCGCGTTCGACATCTTTACCGAGGAGATC GAGCTGCGCGATCCGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig92141:14..181-

>mRNA_Ecto-sp13_S_contig92141.20796.1 ID=mRNA_Ecto-sp13_S_contig92141.20796.1|Name=mRNA_Ecto-sp13_S_contig92141.20796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92141:14..181- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGAGAGAGACGACGGCAAAAGCCCCGACTTTGAGGTGAACCTGGG
CAAGGTGATCTCCACGCTGAGGGAGGACTACCCGCGGATATTCTTCGACC
CTCCCGCGTTCGACATCTTTACCGAGGAGATCGAGCTGCGCGATCCGGTA
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