mRNA_Ecto-sp13_S_contig92103.20794.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig92103.20794.1
Unique NamemRNA_Ecto-sp13_S_contig92103.20794.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: UPI001CA5F93E (glycoside hydrolase family 2 protein n=1 Tax=Streptomyces sp. PLK6-54 TaxID=2873382 RepID=UPI001CA5F93E)

HSP 1 Score: 57.0 bits (136), Expect = 3.640e-8
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   40 VYQPRSFYTACDELGLMVWQDLPYACALYP 129
            +Y+   FYTACDELGLMVWQD P+ACA YP
Sbjct:  382 IYESEDFYTACDELGLMVWQDFPFACAAYP 411
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: A0A0F8YAH5_LOKSG (Beta-galactosidase n=5 Tax=root TaxID=1 RepID=A0A0F8YAH5_LOKSG)

HSP 1 Score: 57.0 bits (136), Expect = 3.650e-8
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   40 VYQPRSFYTACDELGLMVWQDLPYACALYPVDA 138
            +Y+  SFY  CDELGL+VWQD P+ACALYP +A
Sbjct:  391 IYEDESFYNLCDELGLLVWQDFPFACALYPYNA 423
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: A0A1G0CMA2_9FLAO (Glyco_hydro_2 domain-containing protein n=1 Tax=Fluviicola sp. RIFCSPHIGHO2_12_FULL_43_24 TaxID=1798019 RepID=A0A1G0CMA2_9FLAO)

HSP 1 Score: 56.6 bits (135), Expect = 4.980e-8
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 HASNYKYLRSVPP-VYQPRSFYTACDELGLMVWQDLPYACALYP 129
            HASN+  +R      YQP +FY ACDELG+MVWQD  +ACA+YP
Sbjct:  359 HASNFNMVRVWGGGYYQPDAFYDACDELGIMVWQDFMFACAMYP 402
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: A0A0C2BDV1_9ACTN (Beta-mannosidase n=2 Tax=Streptomyces sp. 150FB TaxID=1576605 RepID=A0A0C2BDV1_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 6.820e-8
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   40 VYQPRSFYTACDELGLMVWQDLPYACALYPVDATPPS 150
            +Y+  +FY ACDELGLMVWQD P+ACA YP +   P+
Sbjct:  346 IYEDEAFYAACDELGLMVWQDFPFACAAYPEEGPLPA 382
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: A0A4Y3VA37_9ACTN (Beta-mannosidase n=6 Tax=Streptomyces TaxID=1883 RepID=A0A4Y3VA37_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 9.320e-8
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   40 VYQPRSFYTACDELGLMVWQDLPYACALYP 129
            +Y+   FYTACDELGL+VWQD P+ACA YP
Sbjct:  345 IYESEDFYTACDELGLLVWQDFPFACAAYP 374
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: UPI001B35889C (glycoside hydrolase family 2 protein n=1 Tax=Streptomyces sp. B93 TaxID=2824875 RepID=UPI001B35889C)

HSP 1 Score: 55.8 bits (133), Expect = 9.320e-8
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   40 VYQPRSFYTACDELGLMVWQDLPYACALYP 129
            +Y+   FYTACDELGL+VWQD P+ACA YP
Sbjct:  348 IYESEDFYTACDELGLLVWQDFPFACAAYP 377
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: UPI001679B2A1 (glycoside hydrolase family 2 protein n=1 Tax=Streptomyces phaeofaciens TaxID=68254 RepID=UPI001679B2A1)

HSP 1 Score: 55.8 bits (133), Expect = 9.320e-8
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   40 VYQPRSFYTACDELGLMVWQDLPYACALYP 129
            +Y+   FYTACDELGL+VWQD P+ACA YP
Sbjct:  346 IYESEDFYTACDELGLLVWQDFPFACAAYP 375
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: I0HDX9_ACTM4 (Putative glycosyl hydrolase n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NBRC 102363 / NCIMB 12654 / NRRL B-3342 / UNCC 431) TaxID=512565 RepID=I0HDX9_ACTM4)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-7
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   40 VYQPRSFYTACDELGLMVWQDLPYACALYP 129
            +Y+ R+FY  CDELGLMVWQD P+ACA YP
Sbjct:  352 IYEDRAFYEVCDELGLMVWQDFPFACACYP 381
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: A0A4Q7ZRU8_9ACTN (Beta-mannosidase n=1 Tax=Krasilnikovia cinnamomea TaxID=349313 RepID=A0A4Q7ZRU8_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-7
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   40 VYQPRSFYTACDELGLMVWQDLPYACALYP 129
            +Y+ R+FY  CDELGLMVWQD P+ACA YP
Sbjct:  367 IYEDRAFYEVCDELGLMVWQDFPFACACYP 396
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BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Match: UPI0018924B6A (glycoside hydrolase family 2 protein n=1 Tax=Catenulispora rubra TaxID=280293 RepID=UPI0018924B6A)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-7
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   40 VYQPRSFYTACDELGLMVWQDLPYACALYPVD 135
            +Y+  +FY ACDELGL+VWQD P+ACA YP D
Sbjct:  370 IYEDEAFYRACDELGLLVWQDFPFACAAYPED 401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig92103.20794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001CA5F93E3.640e-873.33glycoside hydrolase family 2 protein n=1 Tax=Strep... [more]
A0A0F8YAH5_LOKSG3.650e-866.67Beta-galactosidase n=5 Tax=root TaxID=1 RepID=A0A0... [more]
A0A1G0CMA2_9FLAO4.980e-859.09Glyco_hydro_2 domain-containing protein n=1 Tax=Fl... [more]
A0A0C2BDV1_9ACTN6.820e-859.46Beta-mannosidase n=2 Tax=Streptomyces sp. 150FB Ta... [more]
A0A4Y3VA37_9ACTN9.320e-870.00Beta-mannosidase n=6 Tax=Streptomyces TaxID=1883 R... [more]
UPI001B35889C9.320e-870.00glycoside hydrolase family 2 protein n=1 Tax=Strep... [more]
UPI001679B2A19.320e-870.00glycoside hydrolase family 2 protein n=1 Tax=Strep... [more]
I0HDX9_ACTM41.270e-770.00Putative glycosyl hydrolase n=1 Tax=Actinoplanes m... [more]
A0A4Q7ZRU8_9ACTN1.270e-770.00Beta-mannosidase n=1 Tax=Krasilnikovia cinnamomea ... [more]
UPI0018924B6A1.270e-765.63glycoside hydrolase family 2 protein n=1 Tax=Caten... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig92103contigEcto-sp13_S_contig92103:106..255 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464192.8891816-CDS-Ecto-sp13_S_contig92103:105..2551681464192.8891816-CDS-Ecto-sp13_S_contig92103:105..255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig92103 106..255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig92103.20794.1prot_Ecto-sp13_S_contig92103.20794.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig92103 106..255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig92103.20794.1

>prot_Ecto-sp13_S_contig92103.20794.1 ID=prot_Ecto-sp13_S_contig92103.20794.1|Name=mRNA_Ecto-sp13_S_contig92103.20794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
HASNYKYLRSVPPVYQPRSFYTACDELGLMVWQDLPYACALYPVDATPPS
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mRNA from alignment at Ecto-sp13_S_contig92103:106..255+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig92103.20794.1 ID=mRNA_Ecto-sp13_S_contig92103.20794.1|Name=mRNA_Ecto-sp13_S_contig92103.20794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92103:106..255+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCCTCAAACTACAAATATCTCCGCTCCGTGCCCCCCGTGTACCAGCC
CCGATCTTTTTACACGGCCTGTGACGAGCTAGGGCTCATGGTCTGGCAAG
ACCTGCCCTACGCGTGTGCCCTCTACCCTGTGGATGCGACACCACCTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig92103:106..255+

>mRNA_Ecto-sp13_S_contig92103.20794.1 ID=mRNA_Ecto-sp13_S_contig92103.20794.1|Name=mRNA_Ecto-sp13_S_contig92103.20794.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig92103:106..255+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGCCTCAAACTACAAATATCTCCGCTCCGTGCCCCCCGTGTACCAGCC
CCGATCTTTTTACACGGCCTGTGACGAGCTAGGGCTCATGGTCTGGCAAG
ACCTGCCCTACGCGTGTGCCCTCTACCCTGTGGATGCGACACCACCTTCT
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