mRNA_Ecto-sp13_S_contig9210.20793.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9210.20793.1
Unique NamemRNA_Ecto-sp13_S_contig9210.20793.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: D7FHP2_ECTSI (40S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP2_ECTSI)

HSP 1 Score: 580 bits (1494), Expect = 9.580e-208
Identity = 304/307 (99.02%), Postives = 304/307 (99.02%), Query Frame = 1 
Query:   19 QDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMAGGAAPTPMEGFAAVDPAAAAPVPVEYQAPPQAAAMGGGWDAAPATGAEQGMPVEQVQPVAEAMPVDAGVPPAAGGGWDAQQPQAPVQQQQQAPQQAQGGGWGGAPAQAGGGW 939
            QDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMAGGAAPTPMEGFAAVDPAAAAPVPVEYQAPPQAAAMGGGWDAAPATGAEQGMPVEQVQPVAEAMPVDAGVPPAAGGGWDAQQ QAPVQQ Q APQQAQGGGWGGAPAQAGGGW
Sbjct:   45 QDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMAGGAAPTPMEGFAAVDPAAAAPVPVEYQAPPQAAAMGGGWDAAPATGAEQGMPVEQVQPVAEAMPVDAGVPPAAGGGWDAQQAQAPVQQAQ-APQQAQGGGWGGAPAQAGGGW 350
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: A0A7S4DAK2_HETAK (40S ribosomal protein SA n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAK2_HETAK)

HSP 1 Score: 326 bits (835), Expect = 8.690e-108
Identity = 165/195 (84.62%), Postives = 176/195 (90.26%), Query Frame = 1 
Query:   19 QDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMA 603
            QDG+H++N+GKTWEK+VLAARIIVAIENP+DVVAISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLL+ITDPR D+QAVKEASYVNVPVIAFCDSDSPL NVDVAIP+NNKGKLSIGLLYWLLAREVLRMRGTI R   WDVPVDLFFYR+PEELEKA+EAQA   E    A  GWGA P A
Sbjct:   69 QDGVHVMNLGKTWEKIVLAARIIVAIENPEDVVAISARPYGQRAVLKFAQYTGANSIAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQAVKEASYVNVPVIAFCDSDSPLPNVDVAIPANNKGKLSIGLLYWLLAREVLRMRGTISRDAPWDVPVDLFFYRDPEELEKADEAQAAAYEEQVPA--GWGAAPEA 261
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: A0A836CJ71_9STRA (40S ribosomal protein SA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ71_9STRA)

HSP 1 Score: 318 bits (815), Expect = 5.130e-105
Identity = 166/198 (83.84%), Postives = 174/198 (87.88%), Query Frame = 1 
Query:   22 DGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMAGGAA 615
            DGIHILNIGKTWEKLVLAARII AIENPQDV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPRLLIITDPR DAQAVKE+SYVNVPVIAFCDSDSPL  VDVAIP+NNKGKLSIGLLYW+LAREVLR+RGT+ R   WDVPVDLFF+REPEELEK E  Q  F+EPAA  A GW A    G AA
Sbjct:   46 DGIHILNIGKTWEKLVLAARIIAAIENPQDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQAVKESSYVNVPVIAFCDSDSPLNYVDVAIPANNKGKLSIGLLYWMLAREVLRLRGTVPRDAPWDVPVDLFFHREPEELEKTEAEQ--FEEPAAPTA-GWDATAGMGAAA 240
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: F0Y9V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9V2_AURAN)

HSP 1 Score: 314 bits (805), Expect = 6.200e-105
Identity = 150/176 (85.23%), Postives = 167/176 (94.89%), Query Frame = 1 
Query:   19 QDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQA 546
            QDGIHI+N+GKTWEKL+LAAR++ AIENPQD++AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQF+EPR+L+ITDPR D+QAVKEASYVN+PVIAFCDSDSP Q+VDVAIPSNNKGKLSIGLLYWLLARE+LRMRGT+ R   WDVPVDLFFYR+PEELEKA+EAQA
Sbjct:   37 QDGIHIINVGKTWEKLMLAARVLTAIENPQDIIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFKEPRILVITDPRTDSQAVKEASYVNLPVIAFCDSDSPCQHVDVAIPSNNKGKLSIGLLYWLLAREMLRMRGTVARHAPWDVPVDLFFYRDPEELEKADEAQA 212
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: A0A8J2SYU6_9STRA (40S ribosomal protein SA n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYU6_9STRA)

HSP 1 Score: 319 bits (817), Expect = 1.050e-104
Identity = 154/176 (87.50%), Postives = 167/176 (94.89%), Query Frame = 1 
Query:   19 QDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQA 546
            QDG+HI+NIGKTWEKL+LAAR++ AIENPQDV+AISARPYGQRAVLKFAQYTG  SIAGRFTPGTFTNQITKQFREPR+L+ITDPR D+QAV EASYVN+PVIAFCDSDSPLQ+VDVAIPSNNKGKLSIGLLYWLLAREVLRMRGT+ R   WDVPVDLFFYR+PEELEKAEEAQA
Sbjct:  114 QDGVHIINIGKTWEKLMLAARVLTAIENPQDVIAISARPYGQRAVLKFAQYTGAASIAGRFTPGTFTNQITKQFREPRILVITDPRTDSQAVAEASYVNLPVIAFCDSDSPLQHVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTVSRLAPWDVPVDLFFYRDPEELEKAEEAQA 289
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: D0MUE8_PHYIT (40S ribosomal protein SA n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0MUE8_PHYIT)

HSP 1 Score: 310 bits (795), Expect = 1.820e-102
Identity = 154/189 (81.48%), Postives = 173/189 (91.53%), Query Frame = 1 
Query:   22 DGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWG 588
            DGIHI+N+GKTWEKL+LAAR+IVA+ENP+DV+AISARPYGQRAVLKFAQ+TGC +IA RFTPGTFTNQITKQFREPRLL+ITDPR D+QAV+E+S+VNVPVIAFCDSDSPLQ VDVAIP+NNKGKLSIGLLYWLLAREVLR+RGTI RT+ WDV VDLF YR+PEEL+KAEEAQA   E A   A GWG
Sbjct:   38 DGIHIINVGKTWEKLMLAARVIVAVENPEDVIAISARPYGQRAVLKFAQHTGCQAIASRFTPGTFTNQITKQFREPRLLLITDPRTDSQAVRESSFVNVPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISRTLPWDVAVDLFLYRDPEELKKAEEAQATAAEEAQTRA-GWG 225
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: M4BW24_HYAAE (40S ribosomal protein SA n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BW24_HYAAE)

HSP 1 Score: 309 bits (792), Expect = 3.970e-102
Identity = 167/242 (69.01%), Postives = 192/242 (79.34%), Query Frame = 1 
Query:   22 DGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWG------ADPMAGGAAPT-PMEGFAAVDPAAAAPVPVEYQAPPQAAAMGGGWDA 726
            DG+HI+N+GKTWEKL+LAAR+IVA+ENP+DV+AISARPYGQRAVLKFAQ+TGC +IA RFTPGTFTNQITKQFREPRLLIITDPR D+QAV+E+S+VNVPVIAFCDSDSPLQ VDVAIP+NNKGKLSIGLLYWLLAREVLR+RGTI  ++ WDV VDLF YR+PEEL+KAEEAQA   E A A   GWG      A+P    A P+ P+ G     PA  +    E+     AAA    WDA
Sbjct:   28 DGVHIINVGKTWEKLMLAARVIVAVENPEDVIAISARPYGQRAVLKFAQHTGCQAIASRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESSFVNVPVIAFCDSDSPLQFVDVAIPANNKGKLSIGLLYWLLAREVLRLRGTISHSLPWDVVVDLFLYRDPEELKKAEEAQATAAEEAPARI-GWGEASQTPAEPSMYAAEPSVPVAGIPEASPAGNS----EWAGEAGAAASSSNWDA 264
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: A0A7S2UMV7_9STRA (40S ribosomal protein SA n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMV7_9STRA)

HSP 1 Score: 310 bits (793), Expect = 6.070e-102
Identity = 171/248 (68.95%), Postives = 193/248 (77.82%), Query Frame = 1 
Query:   22 DGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPMAGGAAPTPMEGFAAVDPAAAAPVPVE-----YQAPPQAAAMGGGWDAAPATGAEQ 750
            DG+HILNIGKTWEK++LAAR+IVAIENP+DV+AISARPYG RAVLKFA YTG  SIAGRFTPGTFTNQITKQFREPRLL+ITDPR D+QAV+E+SYVNVPVIAFCDSDSPLQ VD+AIP+NNKGK SIGLLYW+LAREVLR+RGT  R V WDVPVDLFF+R+PEEL+K EE QA   + AAA    + A       AP  +EG AA D  AA     +     + A P AAA   GWD A  TG EQ
Sbjct:   54 DGVHILNIGKTWEKIMLAARVIVAIENPEDVIAISARPYGMRAVLKFAHYTGAQSIAGRFTPGTFTNQITKQFREPRLLVITDPRTDSQAVRESSYVNVPVIAFCDSDSPLQYVDIAIPANNKGKFSIGLLYWMLAREVLRLRGTASRAVDWDVPVDLFFHRDPEELKKNEEEQAAAVQVAAAPTPVYDATEEVP-VAPGLIEGVAASDVVAAPATGFDATAGGFDAVPAAAA---GWDQAAPTGGEQ 297
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: A0A1V9ZU98_9STRA (40S ribosomal protein SA n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZU98_9STRA)

HSP 1 Score: 309 bits (791), Expect = 6.440e-102
Identity = 149/174 (85.63%), Postives = 165/174 (94.83%), Query Frame = 1 
Query:   22 DGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQ 543
            DGIHI+N+GKTWEKL+LAA+IIVA+ENP DV+AISARPYGQRAVLKFAQYTGC +IAGRFTPGTFTNQITKQFREPRLLIITDPR DAQ V+E++YVNVPVIAFCDSDSPL+ VDVAIP+NNKGKLSIGLLYWLL+REVLR+RGTI R + WDV VDLFFYR+PEELEKAEEAQ
Sbjct:   38 DGIHIINVGKTWEKLMLAAKIIVAVENPADVIAISARPYGQRAVLKFAQYTGCQAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDAQPVRESAYVNVPVIAFCDSDSPLRYVDVAIPANNKGKLSIGLLYWLLSREVLRLRGTISRALPWDVAVDLFFYRDPEELEKAEEAQ 211
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BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Match: K3WLH6_GLOUD (40S ribosomal protein SA n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLH6_GLOUD)

HSP 1 Score: 308 bits (789), Expect = 3.310e-101
Identity = 155/189 (82.01%), Postives = 172/189 (91.01%), Query Frame = 1 
Query:   22 DGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRAVLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKEASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMRGTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWG 588
            DGIHI+NIG+TWEKL+LAAR+IVAIENP DV+AISARPYGQRAVLKFAQYTG  +IAGRFTPGTFTNQITKQFREPRLLIITDPR D+QAV+E+++VNVPVIAFCDSDSPLQ VDVAIPSNNKGKLSIGLLYWLLAREVLR+RGTI R + WDV VDLF YR+PEEL+KAEEAQ+   + A A A GWG
Sbjct:   65 DGIHIINIGQTWEKLMLAARVIVAIENPADVIAISARPYGQRAVLKFAQYTGAAAIAGRFTPGTFTNQITKQFREPRLLIITDPRTDSQAVRESAFVNVPVIAFCDSDSPLQYVDVAIPSNNKGKLSIGLLYWLLAREVLRLRGTISRALPWDVAVDLFLYRDPEELKKAEEAQSGAADEAVARA-GWG 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9210.20793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHP2_ECTSI9.580e-20899.0240S ribosomal protein SA n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4DAK2_HETAK8.690e-10884.6240S ribosomal protein SA n=2 Tax=Heterosigma akash... [more]
A0A836CJ71_9STRA5.130e-10583.8440S ribosomal protein SA n=1 Tax=Tribonema minus T... [more]
F0Y9V2_AURAN6.200e-10585.23Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2SYU6_9STRA1.050e-10487.5040S ribosomal protein SA n=1 Tax=Pelagomonas calce... [more]
D0MUE8_PHYIT1.820e-10281.4840S ribosomal protein SA n=15 Tax=Peronosporaceae ... [more]
M4BW24_HYAAE3.970e-10269.0140S ribosomal protein SA n=1 Tax=Hyaloperonospora ... [more]
A0A7S2UMV7_9STRA6.070e-10268.9540S ribosomal protein SA n=1 Tax=Attheya septentri... [more]
A0A1V9ZU98_9STRA6.440e-10285.6340S ribosomal protein SA n=3 Tax=Saprolegniaceae T... [more]
K3WLH6_GLOUD3.310e-10182.0140S ribosomal protein SA n=1 Tax=Globisporangium u... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9210contigEcto-sp13_S_contig9210:2123..5248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score584.3
Seed ortholog evalue3.3e-164
Seed eggNOG ortholog2880.D7FHP2
Preferred nameRPS0
Model size942
KEGG koko:K02998
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030490,GO:0030684,GO:0030686,GO:0031123,GO:0031125,GO:0031503,GO:0032991,GO:0033036,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042255,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0065003,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons4
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0052@1,KOG0830@2759
Ec32 ortholog descriptionRibosomal protein S2, flavodoxin-like domain
Ec32 orthologEc-07_006200.1
Cds size942
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464192.8144329-CDS-Ecto-sp13_S_contig9210:2122..25961681464192.8144329-CDS-Ecto-sp13_S_contig9210:2122..2596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9210 2123..2596 -
1681464192.8288128-CDS-Ecto-sp13_S_contig9210:3657..38371681464192.8288128-CDS-Ecto-sp13_S_contig9210:3657..3837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9210 3658..3837 -
1681464192.846472-CDS-Ecto-sp13_S_contig9210:4291..44711681464192.846472-CDS-Ecto-sp13_S_contig9210:4291..4471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9210 4292..4471 -
1681464192.8584445-CDS-Ecto-sp13_S_contig9210:5140..52481681464192.8584445-CDS-Ecto-sp13_S_contig9210:5140..5248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9210 5141..5248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9210.20793.1prot_Ecto-sp13_S_contig9210.20793.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9210 2123..5248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9210.20793.1

>prot_Ecto-sp13_S_contig9210.20793.1 ID=prot_Ecto-sp13_S_contig9210.20793.1|Name=mRNA_Ecto-sp13_S_contig9210.20793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=314bp
MLRFSLQDGIHILNIGKTWEKLVLAARIIVAIENPQDVVAISARPYGQRA
VLKFAQYTGCLSIAGRFTPGTFTNQITKQFREPRLLIITDPRPDAQAVKE
ASYVNVPVIAFCDSDSPLQNVDVAIPSNNKGKLSIGLLYWLLAREVLRMR
GTIDRTVAWDVPVDLFFYREPEELEKAEEAQAPFQEPAAAAASGWGADPM
AGGAAPTPMEGFAAVDPAAAAPVPVEYQAPPQAAAMGGGWDAAPATGAEQ
GMPVEQVQPVAEAMPVDAGVPPAAGGGWDAQQPQAPVQQQQQAPQQAQGG
GWGGAPAQAGGGW*
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mRNA from alignment at Ecto-sp13_S_contig9210:2123..5248-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9210.20793.1 ID=mRNA_Ecto-sp13_S_contig9210.20793.1|Name=mRNA_Ecto-sp13_S_contig9210.20793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9210:2123..5248- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTACGGTTTTCGTTACAGGATGGCATCCACATCCTCAACATCGGCAA
GACCTGGGAGAAGCTGGTCCTTGCCGCCCGTATCATCGTGGCCATCGAGA
ACCCCCAGGTGCGGATGGGAGCCCTTGTGGACAAGTTAGTTTATTTTTGT
GCATTGATGTTGAAGCTCTTGTCCTTGTGGAGAGCAATGTCACTGTCTCT
GCCCTGAGATGGAGGATGCGAGCAGAGCTGAATCTCTCCCGCGGTAACGG
AAGGCAACAACAACTCTCAGCTAGAAACACCTCTCCCGCCAAACTCCGGC
TGCAGCCGACACGCTCGCATTCACAACTACTCGTGTGTTGGCAATTGGTT
CCCCTCTCTCCCAAGTTTCAGATTGCAGGCATGCTTCGTACCCTACGGCT
TTCTACTGAACGAGATCCCCTAGTAGAAAAACGTGCGACGGGTGCACGCA
GAGTACTCGCCCAACCACGTTTTTTTGTCTGTTGATGGGGGTGTAGTCTA
CAGCAACCACCTGACTTTACGTTCGCGGTGATGTAGTGTGGGGGCGTGAA
TATTGCTTGTTGGGGACGTTGTCGAGGGCCTCTAGCCGGCCCCTTCCGCG
TGACCCCCCATGAAGTTGGCTGGTCCAGTTTACGGCCCTGTCGGCGCCCT
CTCTGGCAGAATGGCCGGGGTAATGTCGGGTCGCTCTCTGTCTTCACGCA
AGTATCCCTTGCTCCCCCATTGTTTTCGCGGCGTTTCCCTCTTGACAACA
ACATAACGACGGGCACATCATCCACAGGACGTTGTGGCCATCTCGGCTCG
CCCCTACGGCCAGCGCGCGGTGCTCAAGTTCGCCCAGTACACGGGCTGCC
TTTCCATCGCCGGCCGCTTCACCCCCGGTACCTTCACCAACCAGATCACC
AAGCAGTTCCGTGAGCCCCGCCTGCTGATCATCACCGACCCCCGCCCTGA
CGCCCAGGTACTGTGTGGTTTGTTGGTGGTGGGTCTGGTGTATGGGGTTG
GCGTTGATTGTCGATAACGAGCGGGATCGGGACAGGAGTGTTTGTTTTTC
GCCTCGATGCACACTTGAAAGATCGCTTCTGTCACAGGCAACACTCCTAG
GCACGCGTAATTCGTTTCGTATTCCCCACGAGACGACGCATTTATTTTAA
CACCCGTACGCACACGGCCTTATATGCCTTGCATCCAGCACAGGAATGCT
GCATGGCTGAACCGTTTCCCGAGCGTGAAATTTGCTGTGGACTGTCACCG
TGCGCGGCGACTCCGCTTGCCTTGATTTTGCGGCGTAACACTATCCACGC
GCGCGTTAATTTATCCCGGGGGATGACGCATGTCCATCGCAGGTAGTGGA
CGTGTCGCTAACCAATGACCCCCCCCCCCCTATCCCCGTCTGCCTGGCCG
GCGAAAAACAGGCGGTGAAGGAGGCGTCATACGTGAACGTCCCCGTGATC
GCTTTCTGCGACAGCGACTCCCCCCTCCAGAACGTGGACGTGGCCATCCC
CTCCAACAACAAGGGGAAGCTGTCCATCGGTCTCCTGTACTGGCTGCTGG
CTAGGGAGGTGCTCCGTATGCGCGGCACGATCGACCGCACGGTGAGGAAA
CGGGCAGGGGGATCGCGCCCCGGCCGAGCTACGTTCTGATATCGATACAA
GAAGCTTGTGCTGTGCTTTTGTGGTTGAGTTTGCGTTGATTGCCCCATGC
AACAACCAACCGAATGACTGATTTATTTTGTTTCTGATTTTATTCGGTAG
TGAAGCTGCACGAACAACCCGTTTTGGCGTGTCTGTCGCGTGGACACACG
GACGGTGTGTGGGTAGCGCATGTGTGTCGGTACTCTAGGTTGTGTCGTGG
GCGTCCGGAATTATTTGCCCCGAGCTTGCCTTTTTTAATCCGTGCTCAAT
TTGTTCAAGAGTGCAGTCACAGGGCCCTCCTCCTCCCAGCTTTGTTCTGG
TTTTGCGTGTTCCTTGATTGAACGTGTTTTCGAGTGACCGCTGACGAGAC
TTGCGGCAACCTAGCGGGCTAGGCCTCCTGTTATTGGTACCGACGAGAAC
GCACGGATAAACACAATGTTTGACCGAACGCATGTCACGCGCCAATCCGC
TGCAAGCCCAATCCCACGTCATCCCTTACGGACGACCCCCACTACGCAAC
ACAGGTCTTTATGAAAAACCACCCAGCCAACCAACCCACGTGCCCTCAAC
TCAGCGCACCCGCTTGAACAGTGTACCAATTCGCTTATTTTGTCCACAGC
AATAACCGGTTGCCCCGGTCGCCTAGTTGGTATCCTCGAAAACCTTCCAT
CGCCATGGTCAAGGGTTTGAGTCACCGGCGTAAGCTAGCTTGTCTTGCGA
AGTGAGTTTGTCTCTCGCTTCCGTTCCTGGCCCGGGTGGAAAGCGCGACA
TGTTTCTTGTGTGCACAGACGGAAAAGAGTGCTGCACTCTTTTCGCATTA
ATAATCGAAGGCAAAGCACCGCAGGAGGGGCGGGTAGGGGACCTCAGTGA
GAGGAATCCTTCTGTGTGACCACGGTTTGGAGCAAAACGACACAAGTGCC
GTGAGCACCGATTTGAAGCGAAGACAACCCAACAAGAGAACATTTTCAAA
CAAAATCTTGGACGCACCCCCTAATCGTTTTTTCTTTTTAAATCTGCAAC
AGGTCGCCTGGGACGTTCCCGTGGACCTCTTCTTCTACCGCGAGCCGGAA
GAGCTCGAGAAGGCGGAGGAGGCGCAGGCCCCCTTCCAGGAACCCGCCGC
GGCCGCCGCCAGCGGCTGGGGCGCCGACCCCATGGCCGGCGGCGCCGCCC
CCACCCCGATGGAAGGCTTCGCCGCCGTCGACCCCGCCGCCGCGGCCCCG
GTGCCCGTGGAGTACCAGGCGCCCCCGCAGGCGGCCGCCATGGGCGGCGG
CTGGGACGCCGCACCGGCCACCGGCGCCGAGCAGGGCATGCCCGTGGAGC
AGGTGCAGCCCGTGGCGGAGGCCATGCCCGTCGACGCGGGCGTGCCCCCG
GCCGCCGGCGGCGGGTGGGACGCGCAGCAACCGCAAGCCCCGGTACAGCA
GCAGCAGCAGGCGCCGCAGCAGGCGCAGGGCGGAGGGTGGGGCGGTGCCC
CGGCCCAGGCCGGCGGAGGGTGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9210:2123..5248-

>mRNA_Ecto-sp13_S_contig9210.20793.1 ID=mRNA_Ecto-sp13_S_contig9210.20793.1|Name=mRNA_Ecto-sp13_S_contig9210.20793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9210:2123..5248- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTACGGTTTTCGTTACAGGATGGCATCCACATCCTCAACATCGGCAA
GACCTGGGAGAAGCTGGTCCTTGCCGCCCGTATCATCGTGGCCATCGAGA
ACCCCCAGGACGTTGTGGCCATCTCGGCTCGCCCCTACGGCCAGCGCGCG
GTGCTCAAGTTCGCCCAGTACACGGGCTGCCTTTCCATCGCCGGCCGCTT
CACCCCCGGTACCTTCACCAACCAGATCACCAAGCAGTTCCGTGAGCCCC
GCCTGCTGATCATCACCGACCCCCGCCCTGACGCCCAGGCGGTGAAGGAG
GCGTCATACGTGAACGTCCCCGTGATCGCTTTCTGCGACAGCGACTCCCC
CCTCCAGAACGTGGACGTGGCCATCCCCTCCAACAACAAGGGGAAGCTGT
CCATCGGTCTCCTGTACTGGCTGCTGGCTAGGGAGGTGCTCCGTATGCGC
GGCACGATCGACCGCACGGTCGCCTGGGACGTTCCCGTGGACCTCTTCTT
CTACCGCGAGCCGGAAGAGCTCGAGAAGGCGGAGGAGGCGCAGGCCCCCT
TCCAGGAACCCGCCGCGGCCGCCGCCAGCGGCTGGGGCGCCGACCCCATG
GCCGGCGGCGCCGCCCCCACCCCGATGGAAGGCTTCGCCGCCGTCGACCC
CGCCGCCGCGGCCCCGGTGCCCGTGGAGTACCAGGCGCCCCCGCAGGCGG
CCGCCATGGGCGGCGGCTGGGACGCCGCACCGGCCACCGGCGCCGAGCAG
GGCATGCCCGTGGAGCAGGTGCAGCCCGTGGCGGAGGCCATGCCCGTCGA
CGCGGGCGTGCCCCCGGCCGCCGGCGGCGGGTGGGACGCGCAGCAACCGC
AAGCCCCGGTACAGCAGCAGCAGCAGGCGCCGCAGCAGGCGCAGGGCGGA
GGGTGGGGCGGTGCCCCGGCCCAGGCCGGCGGAGGGTGGTAA
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