mRNA_Ecto-sp13_S_contig921.20792.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig921.20792.1
Unique NamemRNA_Ecto-sp13_S_contig921.20792.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 2.740e-51
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 3
Query:   78 TNTGDKKVFSNPLDWWRKKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKSATRKKKIA 356
            TNTGDKKVF+NPLD WRKKQLEYPLLAALARRVLAIPSSQAQSER+FSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKSATRKKKIA
Sbjct:  472 TNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKSATRKKKIA 564          
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.310e-21
Identity = 46/81 (56.79%), Postives = 61/81 (75.31%), Query Frame = 3
Query:   96 KVFSNPLDWWRKKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKSAT 338
            KV+ +PLDWWR +  ++P LA LARRVLAIP++QA+SER+FS AG  VT  R+ L    VELLV LR+ W +V+EW++S T
Sbjct:  218 KVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNT 298          
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 3.330e-18
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 3
Query:   93 KKVFSNPLDWWRKKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYLRN 299
            ++V   PL+WWR K  EYP LA+LARRVL IP+ QAQSER+FS+AGL VT TR+R+  ENV L+V+LRN
Sbjct:  474 QEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRN 542          
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: A0A8B8G1F8_9HEMI (zinc finger BED domain-containing protein 1-like n=4 Tax=Aphididae TaxID=27482 RepID=A0A8B8G1F8_9HEMI)

HSP 1 Score: 81.6 bits (200), Expect = 7.660e-17
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 3
Query:  108 NPLDWWRKKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYL 293
            NPL+WWR ++ +YP +A +A++ LAIPS+ A SER FSTAG  VTP RS LL ENV++LV+L
Sbjct:   76 NPLEWWRTREEKYPAIATIAKKYLAIPSTSASSERCFSTAGNIVTPKRSCLLPENVDMLVFL 137          
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.400e-14
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  129 KKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKSAT 338
            K   ++P LA LARRVLAIP++QA+SER+FS AG  VT  R+ L    VELLV LR+ W +V+EW++S T
Sbjct:  149 KVSTDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQSNT 218          
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F)

HSP 1 Score: 73.2 bits (178), Expect = 2.400e-13
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  105 SNPLDWWRKKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYL 293
            +N + WW+   + +PLLAA+AR +LAIP++Q  SER+FSTAG  V   RSRL  ENVE+L +L
Sbjct:  101 TNVISWWKANIVRFPLLAAVARNLLAIPATQVTSERLFSTAGNIVNEKRSRLCSENVEMLSFL 163          
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: A0A7S3PTX0_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTX0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.970e-13
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   96 KVFSNPLDWWRKKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEW 323
            K F++PL WW++   EYP +  LA+R+L++P++ A SER+FS A L  T  R  L  +NV +LV+L+  + ++ EW
Sbjct:   89 KGFNSPLQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKENFDLI-EW 163          
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: A0A7S3PUA6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUA6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.990e-12
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   96 KVFSNPLDWWRKKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEW 323
            K F++PL WW++   EYP +  LA+R+L++P++ A SER+FS A L  T  R  L  +NV +LV+L+  + ++ EW
Sbjct:  156 KGFNSPLQWWKQNHREYPNIWMLAKRILSVPATSAPSERVFSVASLIATKKRGSLKPDNVNMLVFLKENFDLI-EW 230          
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: A0A6G0STC2_APHGL (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Aphidini TaxID=33387 RepID=A0A6G0STC2_APHGL)

HSP 1 Score: 70.5 bits (171), Expect = 3.520e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 3
Query:  111 PLDWWRKKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLV 287
            PL+WW+  + +YPL+A +A++ L IP++   SER FSTAG  VTP RS L  ENV LLV
Sbjct:  125 PLEWWKSHEKKYPLIAQIAKKYLCIPATSVSSERCFSTAGNVVTPKRSCLSTENVNLLV 183          
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Match: UPI0013B3DADC (zinc finger BED domain-containing protein 1-like n=1 Tax=Xiphophorus helleri TaxID=8084 RepID=UPI0013B3DADC)

HSP 1 Score: 69.7 bits (169), Expect = 1.080e-11
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  105 SNPLDWWRKKQLEYPLLAALARRVLAIPSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYL 293
            +NPL+WWR+ + EYPLL+  A+R L IP S   +ER+FSTAG  VT  RS L  E+V+ L++L
Sbjct:  140 TNPLNWWREHEGEYPLLSCQAKRYLCIPGSSVPAERIFSTAGDIVTAQRSALKPEHVDQLLFL 202          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig921.20792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI2.740e-5196.77Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JWI1_9PHAE3.310e-2156.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE3.330e-1863.77Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A8B8G1F8_9HEMI7.660e-1759.68zinc finger BED domain-containing protein 1-like n... [more]
A0A6H5JPB0_9PHAE2.400e-1455.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI000EAB1B8F2.400e-1353.97zinc finger BED domain-containing protein 1-like n... [more]
A0A7S3PTX0_9STRA5.970e-1342.11Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3PUA6_9STRA1.990e-1242.11Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6G0STC2_APHGL3.520e-1254.24Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ap... [more]
UPI0013B3DADC1.080e-1152.38zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig921contigEcto-sp13_S_contig921:19881..20346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score188.0
Seed ortholog evalue2.4e-45
Seed eggNOG ortholog2880.D7G5Z0
Model size466
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
Cds size327
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464192.7463977-UTR-Ecto-sp13_S_contig921:19880..199151681464192.7463977-UTR-Ecto-sp13_S_contig921:19880..19915Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig921 19881..19915 +
1681464192.7728903-UTR-Ecto-sp13_S_contig921:20242..203461681464192.7728903-UTR-Ecto-sp13_S_contig921:20242..20346Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig921 20243..20346 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464192.7600586-CDS-Ecto-sp13_S_contig921:19915..202421681464192.7600586-CDS-Ecto-sp13_S_contig921:19915..20242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig921 19916..20242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig921.20792.1prot_Ecto-sp13_S_contig921.20792.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig921 19916..20242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig921.20792.1

>prot_Ecto-sp13_S_contig921.20792.1 ID=prot_Ecto-sp13_S_contig921.20792.1|Name=mRNA_Ecto-sp13_S_contig921.20792.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MPHTRCGSISGCIGTNTGDKKVFSNPLDWWRKKQLEYPLLAALARRVLAI
PSSQAQSERMFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKSA
TRKKKIAS*
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mRNA from alignment at Ecto-sp13_S_contig921:19881..20346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig921.20792.1 ID=mRNA_Ecto-sp13_S_contig921.20792.1|Name=mRNA_Ecto-sp13_S_contig921.20792.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig921:19881..20346+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCAAGATGGAGCCGAAGCTGCCCAAGCCCCCGAATGCCTCACACCCGG TGTGGAAGCATTTCAGGGTGTATCGGAACCAACACGGGAGACAAGAAGGT CTTCAGCAATCCCCTGGACTGGTGGCGCAAGAAGCAATTGGAGTACCCTC TGCTCGCGGCGCTGGCTCGTCGTGTGCTTGCCATTCCGTCATCTCAAGCG CAATCCGAGCGCATGTTTTCTACGGCAGGGCTAACCGTGACGCCCACGCG GAGTCGCCTTTTAGACGAAAACGTCGAGCTCCTCGTGTACTTGCGCAACG TGTGGGGTGTAGTGGATGAGTGGAAGAAGAGTGCTACTCGCAAAAAGAAG ATTGCTAGCTAAAGATTGCTGTTTCGATCCTCTAACCAGCACGTCGTCGT GATTGTCGTGGATTTTCCGCTTTTTTTTTGTGTGGAGCAGGCCACGTGTG GACGGTTGGTTTTTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig921:19881..20346+

>mRNA_Ecto-sp13_S_contig921.20792.1 ID=mRNA_Ecto-sp13_S_contig921.20792.1|Name=mRNA_Ecto-sp13_S_contig921.20792.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig921:19881..20346+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCACACCCGGTGTGGAAGCATTTCAGGGTGTATCGGAACCAACAC
GGGAGACAAGAAGGTCTTCAGCAATCCCCTGGACTGGTGGCGCAAGAAGC
AATTGGAGTACCCTCTGCTCGCGGCGCTGGCTCGTCGTGTGCTTGCCATT
CCGTCATCTCAAGCGCAATCCGAGCGCATGTTTTCTACGGCAGGGCTAAC
CGTGACGCCCACGCGGAGTCGCCTTTTAGACGAAAACGTCGAGCTCCTCG
TGTACTTGCGCAACGTGTGGGGTGTAGTGGATGAGTGGAAGAAGAGTGCT
ACTCGCAAAAAGAAGATTGCTAGCTAA
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