mRNA_Ecto-sp13_S_contig9207.20788.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9207.20788.1
Unique NamemRNA_Ecto-sp13_S_contig9207.20788.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9207.20788.1 vs. uniprot
Match: D7FGS3_ECTSI (PBPe domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.040e-23
Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:   76 MRLAVDDINRGALAETLPDASTASLDGNLTLSVVEVATGSRAIEGLCDALEYVGEN 243
            MRLAVDDIN GALA TLPDAS ASLDGNLTLSVVEVATGSRAIEGLCDALEYVGEN
Sbjct:    1 MRLAVDDINGGALAATLPDASKASLDGNLTLSVVEVATGSRAIEGLCDALEYVGEN 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9207.20788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FGS3_ECTSI1.040e-2394.64PBPe domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9207contigEcto-sp13_S_contig9207:2797..3040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score103.2
Seed ortholog evalue5.8e-20
Seed eggNOG ortholog2880.D7FGS3
Model size246
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.NMDA glutamate receptor activity
EggNOG OGsKOG4440@1,KOG4440@2759
Cds size243
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464192.4728775-CDS-Ecto-sp13_S_contig9207:2796..30391681464192.4728775-CDS-Ecto-sp13_S_contig9207:2796..3039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9207 2797..3039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9207.20788.1prot_Ecto-sp13_S_contig9207.20788.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9207 2797..3039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9207.20788.1

>prot_Ecto-sp13_S_contig9207.20788.1 ID=prot_Ecto-sp13_S_contig9207.20788.1|Name=mRNA_Ecto-sp13_S_contig9207.20788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
LIALTLPETNTTSGYFPLSKALRSVMRLAVDDINRGALAETLPDASTASL
DGNLTLSVVEVATGSRAIEGLCDALEYVGEN
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mRNA from alignment at Ecto-sp13_S_contig9207:2797..3040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9207.20788.1 ID=mRNA_Ecto-sp13_S_contig9207.20788.1|Name=mRNA_Ecto-sp13_S_contig9207.20788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=244bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9207:2797..3040+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGATTGCTCTCACGCTCCCGGAGACCAACACCACCAGCGGGTACTTCCC
GCTCTCCAAGGCACTGAGATCGGTGATGAGGCTCGCCGTGGACGATATCA
ACCGTGGGGCATTGGCTGAGACCTTGCCGGACGCCTCTACGGCTTCGCTG
GATGGAAATTTGACGCTGTCTGTCGTGGAGGTCGCCACAGGCAGCAGGGC
GATAGAGGGCCTGTGCGACGCGCTCGAGTACGTCGGAGAGAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9207:2797..3040+

>mRNA_Ecto-sp13_S_contig9207.20788.1 ID=mRNA_Ecto-sp13_S_contig9207.20788.1|Name=mRNA_Ecto-sp13_S_contig9207.20788.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9207:2797..3040+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGATTGCTCTCACGCTCCCGGAGACCAACACCACCAGCGGGTACTTCCC
GCTCTCCAAGGCACTGAGATCGGTGATGAGGCTCGCCGTGGACGATATCA
ACCGTGGGGCATTGGCTGAGACCTTGCCGGACGCCTCTACGGCTTCGCTG
GATGGAAATTTGACGCTGTCTGTCGTGGAGGTCGCCACAGGCAGCAGGGC
GATAGAGGGCCTGTGCGACGCGCTCGAGTACGTCGGAGAGAAC
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