mRNA_Ecto-sp13_S_contig9183.20760.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9183.20760.1
Unique NamemRNA_Ecto-sp13_S_contig9183.20760.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9183.20760.1 vs. uniprot
Match: A0A6H5L0M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M1_9PHAE)

HSP 1 Score: 452 bits (1162), Expect = 2.210e-151
Identity = 249/321 (77.57%), Postives = 257/321 (80.06%), Query Frame = 1 
Query:  229 MTSLXXXXXXXXXXXXXXXXXVPRTLCHAMHGNNYADXXXXXXXXXXVDNLDGPGQQQQHHCGGAPAGIGDDASTGRATFGEQGGGFEWLREFGNGKTDIAGLVLSTVLLMTAVGAPLGAAADLGVVDGRVLDPSALNHGPTAVHLNVHLNVDNAVPVTTAEKARNNRVGALNLGGLPRRRPPVTRVAGVEGEVGAAGEASSRRTGPLAQMAGDSMSAVRDIAHRAGAIAASRAPGRESVPGAPGPLRTAKPDVHKEPPPERTEDSGFVVSDDHSGTSLEEGAPSAERLTTANTVRFGKQVEDGTGAATKAARSDQLEELE 1191
            MTSL                 VPRT CHAMHGNNYA           + NLD PGQQQQHH GG PAGIGDD    R TFGEQG GF WLREFGNGKTDIAGLVLSTVLLMTAVGAPLGAAADLGV DGRVL PS+LNHGPTAVHLNV    ++AVPV TAEKARNNRVGALNLGGLP R PPVTRVAGVE EVGA GEAS+RRTGPLAQMA DSMSAVRDIAHRAGAIAASR PGRESVPGAP PLRTAKPDVHKEP  E+TEDS  +V DDHSGTS E GAPSAERLTTAN VRFGKQVE GTGAA+KAAR DQLEELE
Sbjct:    1 MTSLPKRIRPVPLPEAVLATPVPRTRCHAMHGNNYAVDDDRAGGGDDIHNLDAPGQQQQHHYGGVPAGIGDDVYASRDTFGEQGVGFGWLREFGNGKTDIAGLVLSTVLLMTAVGAPLGAAADLGVGDGRVLGPSSLNHGPTAVHLNV----ESAVPVPTAEKARNNRVGALNLGGLPTRSPPVTRVAGVESEVGAGGEASTRRTGPLAQMARDSMSAVRDIAHRAGAIAASRTPGRESVPGAPWPLRTAKPDVHKEPSLEKTEDSRLIVRDDHSGTSFEGGAPSAERLTTANAVRFGKQVEHGTGAASKAARPDQLEELE 317
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BLAST of mRNA_Ecto-sp13_S_contig9183.20760.1 vs. uniprot
Match: D8LGV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV8_ECTSI)

HSP 1 Score: 450 bits (1157), Expect = 3.040e-151
Identity = 247/322 (76.71%), Postives = 258/322 (80.12%), Query Frame = 1 
Query:  229 MTSLXXXXXXXXXXXXXXXXXVPRTLCHAMHGNNYA-DXXXXXXXXXXVDNLDGPGQQQQHHCGGAPAGIGDDASTGRATFGEQGGGFEWLREFGNGKTDIAGLVLSTVLLMTAVGAPLGAAADLGVVDGRVLDPSALNHGPTAVHLNVHLNVDNAVPVTTAEKARNNRVGALNLGGLPRRRPPVTRVAGVEGEVGAAGEASSRRTGPLAQMAGDSMSAVRDIAHRAGAIAASRAPGRESVPGAPGPLRTAKPDVHKEPPPERTEDSGFVVSDDHSGTSLEEGAPSAERLTTANTVRFGKQVEDGTGAATKAARSDQLEELE 1191
            MTSL                 VPRT CHAMHGNNYA            + NLD PGQQ++HH GGAPAGIGDD +  R  FGEQGGGF WLREFGNGKTDIAGLVLSTVLLMTAVGAPLGAAADLGVVDGRVLDPS+L+HGPTAV LNV    +NAVPV TAEKAR NRVGALNLGGLP RRPPVTRVAGVE EVGA GEAS+RRTGPLA+MAGDSMSAVRDIAHRAGAIAASR PGRES PGAPGPLRTAKPDVHKEPPPE+TEDSG VV DDH  TSL+ G PSA R TT N VR G QVEDGTGAA KAARSDQLEELE
Sbjct:    1 MTSLPKRIRPVPLPEAVPATPVPRTRCHAMHGNNYAAHDDDRAGGRADIHNLDAPGQQERHHFGGAPAGIGDDVAASRDIFGEQGGGFGWLREFGNGKTDIAGLVLSTVLLMTAVGAPLGAAADLGVVDGRVLDPSSLSHGPTAVRLNV----ENAVPVPTAEKARANRVGALNLGGLPPRRPPVTRVAGVESEVGAVGEASTRRTGPLAKMAGDSMSAVRDIAHRAGAIAASRGPGRESAPGAPGPLRTAKPDVHKEPPPEKTEDSGSVVGDDHPHTSLQRGVPSAGRSTTVNAVRSGGQVEDGTGAAAKAARSDQLEELE 318
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9183.20760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0M1_9PHAE2.210e-15177.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGV8_ECTSI3.040e-15176.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9183contigEcto-sp13_S_contig9183:90..2581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1191
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_001410.1
Cds size1191
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464190.0487077-CDS-Ecto-sp13_S_contig9183:89..3361681464190.0487077-CDS-Ecto-sp13_S_contig9183:89..336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9183 90..336 -
1681464190.0674884-CDS-Ecto-sp13_S_contig9183:870..9891681464190.0674884-CDS-Ecto-sp13_S_contig9183:870..989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9183 871..989 -
1681464190.0808594-CDS-Ecto-sp13_S_contig9183:1187..14281681464190.0808594-CDS-Ecto-sp13_S_contig9183:1187..1428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9183 1188..1428 -
1681464190.0919335-CDS-Ecto-sp13_S_contig9183:1997..25811681464190.0919335-CDS-Ecto-sp13_S_contig9183:1997..2581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9183 1998..2581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9183.20760.1prot_Ecto-sp13_S_contig9183.20760.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9183 90..2581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9183.20760.1

>prot_Ecto-sp13_S_contig9183.20760.1 ID=prot_Ecto-sp13_S_contig9183.20760.1|Name=mRNA_Ecto-sp13_S_contig9183.20760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=397bp
MPLAFKFSAIASLNAALQLLVLLRCTSITVVDAFVAFRPSASVSEIVWSR
TSHRRTDILPTSSTPPPLSSRPSRSHMTSLPKRIRTVPLPGAVSATPVPR
TLCHAMHGNNYADDDDRAGGGDDVDNLDGPGQQQQHHCGGAPAGIGDDAS
TGRATFGEQGGGFEWLREFGNGKTDIAGLVLSTVLLMTAVGAPLGAAADL
GVVDGRVLDPSALNHGPTAVHLNVHLNVDNAVPVTTAEKARNNRVGALNL
GGLPRRRPPVTRVAGVEGEVGAAGEASSRRTGPLAQMAGDSMSAVRDIAH
RAGAIAASRAPGRESVPGAPGPLRTAKPDVHKEPPPERTEDSGFVVSDDH
SGTSLEEGAPSAERLTTANTVRFGKQVEDGTGAATKAARSDQLEELE
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mRNA from alignment at Ecto-sp13_S_contig9183:90..2581-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9183.20760.1 ID=mRNA_Ecto-sp13_S_contig9183.20760.1|Name=mRNA_Ecto-sp13_S_contig9183.20760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9183:90..2581- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCTTGCGTTCAAATTCAGTGCGATAGCATCCCTCAATGCCGCCCT
CCAGCTGCTTGTGCTCCTTCGGTGTACTTCTATCACGGTCGTAGACGCGT
TCGTAGCATTCCGTCCGAGCGCTTCCGTCTCGGAAATCGTGTGGAGCCGT
ACGAGTCACCGTCGTACGGATATCCTGCCGACGTCATCCACACCACCTCC
CTTGAGTTCAAGACCGTCAAGATCCCACATGACTTCACTCCCAAAGAGGA
TCAGAACGGTCCCTTTGCCTGGAGCTGTTTCTGCCACCCCAGTGCCGAGG
ACGCTGTGTCACGCCATGCATGGCAACAACTACGCTGACGATGATGACCG
TGCAGGTGGCGGGGATGATGTAGACAACCTTGACGGGCCAGGTCAGCAGC
AACAGCATCACTGTGGGGGCGCACCAGCAGGGATTGGTGACGATGCTTCT
ACCGGCAGGGCTACTTTTGGAGAACAAGGAGGAGGGTTCGAGTGGCTCCG
AGAGTTTGGAAACGGAAAGACGGACATCGCCGGGCTGGTTCTTTCGACGG
TGCTCCTGATGACGGCGGTGGGGGCACCACTAGGGTAAGCAAACACTCGG
AATGTGAGTTATTCCACGAGGGTCGGGTTCGTAGATCGATGCGCCACACT
CTCTGCAGTAAATCTACTGTAAGCGGCAACCCTCCAAGTATGCTGCAACA
TTTTGCTATTGCTTTGCTGGAGAAACCACAGCAAAGTCGAACCGAATACA
ATCACCTGGACAGCAATGTTGACTACCATTTTTCAGAGGCTATGCGCAAC
GAAATTACAGAATATTACATGCGATAATGGTACTATTGGTGTACAGTAGA
TCGCTCATGCATCCCTTGTCACCCCTGGGCGAACAGCAACTCATTCATAG
GTCAAGGGCAAACGTTTGTAAGAACGGGAAGACCAAATCTGAGGAAACCA
TGGAACACCGAGAACAGCTGTGACGTCATCAGGCACACGATGCTCTCCAG
CAAATACCTTTTTCACGCGCACCATGCTTCATATCCACAGAAGAAAAAGT
CCCGCGATACAGCCCATCCGTCGTACACCACTATTTAGCACGGCATCATC
GGTGCGCCCATGATTCTGGCAACTCCCCCTCTCCACCCGATCGGCACTTG
CAGGGCCGCCGCAGACCTGGGAGTCGTGGACGGTCGTGTGCTCGACCCGT
CCGCGCTCAATCACGGACCGACCGCTGTGCACTTGAACGTGCACTTGAAC
GTTGATAACGCGGTGCCAGTGACCACTGCGGAAAAGGCAAGGAATAATCG
TGTCGGCGCCTTGAACCTCGGGGGTCTGCCGAGGAGACGCCCGCCGGTGA
CTCGCGTTGCTGGTGTCGAAGGCGAGGTCGGGGCGGCCGGCGAGGTGAGT
CGGGTTGATTTTCACCAATGCCCCGCGATTCGTCCGATGCGTCGAGGCAG
AGAGCATGTGCGCCAACAACAATCGTCCAAAAGAAAATCCTCTTTTTCGT
CACGTCGTAATGAATGTGGAGAGAGTGTTGCTGCTGGCTTGCGCGTCACC
CATCGCAAGCGTAGACACCCCGATCCTCGACGAAACTCGCAGGCGTCCTC
ACGGAGAACGGGGCCTCTGGCGCAGATGGCGGGAGATTCGATGTCGGCGG
TGCGCGACATCGCGCACAGGGCGGGAGCGATCGCGGCCTCGCGAGCGCCC
GGAAGGGAAAGGTACAGTATTTCACAGCACCCAACATTCAGCCTTACTTG
TTCTACATTGCAGGAGGTTGGGAACTTCGAGTCGTAAGTCGCAGAAAAGG
GTGCCAGGCGGTATGTAGCAAAGCCCACGCCGTTTGCAAGTGGGCTCATG
TGCTCCGCGCGCCCCATGCATTGATGTCAGCTTTGCGAGATATATGCACC
GCATATCGTATACAACTACATCATTCTGGATTGAGTTTTGAACTTGATTC
TTCCGCAGGAAAAGATGTGCACGTCGAAACGGACGGCGCATAACCGTCAG
ACAGAGCGTTACAGACGCCGTCTTTCGCTTCGTCTTTTTCATTTTTTATC
GGATCGAGAATCCGAGCTTCGATTGTCTGCATTTCACACGTACAACACAG
TTCTTGTTACAAACAAGCACAGCATCATGGCCAGCTGCTAACAGCCATCA
CTGCAGCAGCAGCAACCACGAAGAAGCAGCAGCAGCAGTAGCAATAGCTA
CACCTGCCCCATCCATACCTGCCGGACATCGCCCGTAACTTCCAGTGTCC
CAGGTGCTCCCGGGCCCCTACGTACAGCGAAACCTGATGTCCATAAAGAG
CCACCCCCCGAAAGAACGGAAGACTCGGGATTTGTCGTAAGCGATGACCA
TTCCGGCACGTCTCTTGAGGAAGGGGCTCCCTCCGCCGAAAGGTTGACAA
CCGCAAATACCGTTCGGTTCGGGAAGCAAGTCGAAGACGGAACTGGGGCG
GCTACTAAGGCTGCTCGTTCGGACCAACTTGAGGAGCTGGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9183:90..2581-

>mRNA_Ecto-sp13_S_contig9183.20760.1 ID=mRNA_Ecto-sp13_S_contig9183.20760.1|Name=mRNA_Ecto-sp13_S_contig9183.20760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1191bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9183:90..2581- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCTTGCGTTCAAATTCAGTGCGATAGCATCCCTCAATGCCGCCCT
CCAGCTGCTTGTGCTCCTTCGGTGTACTTCTATCACGGTCGTAGACGCGT
TCGTAGCATTCCGTCCGAGCGCTTCCGTCTCGGAAATCGTGTGGAGCCGT
ACGAGTCACCGTCGTACGGATATCCTGCCGACGTCATCCACACCACCTCC
CTTGAGTTCAAGACCGTCAAGATCCCACATGACTTCACTCCCAAAGAGGA
TCAGAACGGTCCCTTTGCCTGGAGCTGTTTCTGCCACCCCAGTGCCGAGG
ACGCTGTGTCACGCCATGCATGGCAACAACTACGCTGACGATGATGACCG
TGCAGGTGGCGGGGATGATGTAGACAACCTTGACGGGCCAGGTCAGCAGC
AACAGCATCACTGTGGGGGCGCACCAGCAGGGATTGGTGACGATGCTTCT
ACCGGCAGGGCTACTTTTGGAGAACAAGGAGGAGGGTTCGAGTGGCTCCG
AGAGTTTGGAAACGGAAAGACGGACATCGCCGGGCTGGTTCTTTCGACGG
TGCTCCTGATGACGGCGGTGGGGGCACCACTAGGGGCCGCCGCAGACCTG
GGAGTCGTGGACGGTCGTGTGCTCGACCCGTCCGCGCTCAATCACGGACC
GACCGCTGTGCACTTGAACGTGCACTTGAACGTTGATAACGCGGTGCCAG
TGACCACTGCGGAAAAGGCAAGGAATAATCGTGTCGGCGCCTTGAACCTC
GGGGGTCTGCCGAGGAGACGCCCGCCGGTGACTCGCGTTGCTGGTGTCGA
AGGCGAGGTCGGGGCGGCCGGCGAGGCGTCCTCACGGAGAACGGGGCCTC
TGGCGCAGATGGCGGGAGATTCGATGTCGGCGGTGCGCGACATCGCGCAC
AGGGCGGGAGCGATCGCGGCCTCGCGAGCGCCCGGAAGGGAAAGTGTCCC
AGGTGCTCCCGGGCCCCTACGTACAGCGAAACCTGATGTCCATAAAGAGC
CACCCCCCGAAAGAACGGAAGACTCGGGATTTGTCGTAAGCGATGACCAT
TCCGGCACGTCTCTTGAGGAAGGGGCTCCCTCCGCCGAAAGGTTGACAAC
CGCAAATACCGTTCGGTTCGGGAAGCAAGTCGAAGACGGAACTGGGGCGG
CTACTAAGGCTGCTCGTTCGGACCAACTTGAGGAGCTGGAA
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