mRNA_Ecto-sp13_S_contig918.20751.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig918.20751.1
Unique NamemRNA_Ecto-sp13_S_contig918.20751.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig918.20751.1 vs. uniprot
Match: D7FWB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB2_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.600e-75
Identity = 118/125 (94.40%), Postives = 123/125 (98.40%), Query Frame = 3 
Query:   81 PVCVRLSEGKKGITRDGSMSLTTRETSTSRVDPVAVKRMTPFVRPPINPEQLPPDFLALLSLTFGVAGLMLKSTWASWASVFCCMSSLGNIKVHEADPKQIGCSVLFACMGLFMNYFGPASRPIV 455
            P CVRLS+GK+G+TRDGSMSLTTRE STSRVDPVAVKR+TPFVRPPINPEQLPPD+LALLSLTFGVAGLMLKSTWASWASVFCCMSSLGNIKVHEADPKQIGCSVLFACMGLFMNYFGPASRPIV
Sbjct:   66 PGCVRLSQGKEGVTRDGSMSLTTREPSTSRVDPVAVKRITPFVRPPINPEQLPPDYLALLSLTFGVAGLMLKSTWASWASVFCCMSSLGNIKVHEADPKQIGCSVLFACMGLFMNYFGPASRPIV 190
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BLAST of mRNA_Ecto-sp13_S_contig918.20751.1 vs. uniprot
Match: A0A6H5JS23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS23_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.380e-64
Identity = 103/107 (96.26%), Postives = 105/107 (98.13%), Query Frame = 3 
Query:  135 MSLTTRETSTSRVDPVAVKRMTPFVRPPINPEQLPPDFLALLSLTFGVAGLMLKSTWASWASVFCCMSSLGNIKVHEADPKQIGCSVLFACMGLFMNYFGPASRPIV 455
            MSLTT+E STSRVDPVAVKR+TPFVRPPINPEQLPPDFLALLSLTFGVAGLMLKSTW SWASVFCCMSSLGNIKVHEADPKQIGCSVLFACMGLFMNYFGPASRPIV
Sbjct:    1 MSLTTQEPSTSRVDPVAVKRITPFVRPPINPEQLPPDFLALLSLTFGVAGLMLKSTWTSWASVFCCMSSLGNIKVHEADPKQIGCSVLFACMGLFMNYFGPASRPIV 107
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BLAST of mRNA_Ecto-sp13_S_contig918.20751.1 vs. uniprot
Match: A0A7S2Y0W3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0W3_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.650e-27
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 3 
Query:  204 FVRPPINPEQLPPDFLALLSLTFGVAGLMLKSTWASWASVFCCMSSLGNIKVHEADPKQIGCSVLFACMGLFMNYFGPASR 446
            F R  ++P+QLPPD++ALLSL FG+ GLMLK    +W SVFCCMSS+ NIK  E D KQI CSV+FA MGLFMNYFGP  +
Sbjct:   24 FYREKLDPDQLPPDYIALLSLVFGIMGLMLKYKLCAWLSVFCCMSSMANIKNSEMDIKQIACSVMFAMMGLFMNYFGPTPK 104
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BLAST of mRNA_Ecto-sp13_S_contig918.20751.1 vs. uniprot
Match: L1I9E2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I9E2_GUITC)

HSP 1 Score: 90.9 bits (224), Expect = 1.470e-18
Identity = 45/85 (52.94%), Postives = 59/85 (69.41%), Query Frame = 3 
Query:  177 PVAVKRMTPFVRPPINPEQLPPDFLALLSLTFGVAGLMLKSTWASWASVFCCMSSLGNIKVHEADPKQIGCSVLFACMGLFMNYF 431
            P  V+  TP   PPI  E+LPPD++ALLSL FG+ GL+LK    SW +++ C+SS+ N+K  E D KQI  S++FA MGL MNYF
Sbjct:    7 PDLVRPYTP--PPPIPQEELPPDYMALLSLLFGLLGLLLKYKICSWLALYACLSSVANVKKSEVDLKQIASSLIFALMGLSMNYF 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig918.20751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWB2_ECTSI1.600e-7594.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS23_9PHAE3.380e-6496.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2Y0W3_9STRA3.650e-2764.20Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
L1I9E2_GUITC1.470e-1852.94Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig918contigEcto-sp13_S_contig918:795..5241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score217.2
Seed ortholog evalue3.7e-54
Seed eggNOG ortholog2880.D7FWB2
Preferred nameWDR83OS
Model size1560
KEGG koko:K00784,ko:K07964
KEGG ReactionR07811
KEGG Pathwayko00531,ko01100,ko03013,ko05205,map00531,map01100,map03013,map05205
KEGG ModuleM00078
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Uncharacterised protein family (UPF0139)
EggNOG OGsKOG3462@1,KOG3462@2759
EC3.1.26.11,3.2.1.166
Cds size324
COG Functional cat.S
CAZyGH79
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig918.20751.1prot_Ecto-sp13_S_contig918.20751.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig918 1897..3386 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464189.3613186-UTR-Ecto-sp13_S_contig918:794..18961681464189.3613186-UTR-Ecto-sp13_S_contig918:794..1896Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig918 795..1896 -
1681464189.4161372-UTR-Ecto-sp13_S_contig918:3386..34401681464189.4161372-UTR-Ecto-sp13_S_contig918:3386..3440Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig918 3387..3440 -
1681464189.4415727-UTR-Ecto-sp13_S_contig918:5161..52411681464189.4415727-UTR-Ecto-sp13_S_contig918:5161..5241Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig918 5162..5241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464189.3766553-CDS-Ecto-sp13_S_contig918:1896..19571681464189.3766553-CDS-Ecto-sp13_S_contig918:1896..1957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig918 1897..1957 -
1681464189.3886483-CDS-Ecto-sp13_S_contig918:2566..26671681464189.3886483-CDS-Ecto-sp13_S_contig918:2566..2667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig918 2567..2667 -
1681464189.400643-CDS-Ecto-sp13_S_contig918:3224..33861681464189.400643-CDS-Ecto-sp13_S_contig918:3224..3386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig918 3225..3386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig918.20751.1

>prot_Ecto-sp13_S_contig918.20751.1 ID=prot_Ecto-sp13_S_contig918.20751.1|Name=mRNA_Ecto-sp13_S_contig918.20751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MSLTTRETSTSRVDPVAVKRMTPFVRPPINPEQLPPDFLALLSLTFGVAG
LMLKSTWASWASVFCCMSSLGNIKVHEADPKQIGCSVLFACMGLFMNYFG
PASRPIV*
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mRNA from alignment at Ecto-sp13_S_contig918:795..5241-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig918.20751.1 ID=mRNA_Ecto-sp13_S_contig918.20751.1|Name=mRNA_Ecto-sp13_S_contig918.20751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig918:795..5241- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGGACCAGGAGCGAGCAGAGAGGCTGGACAATCGTTCTAAGTGGCA
CGCTGATTATCCTGGGGGGAAATTTTGAGGGTGAGTGTGCTTGCCTTCTT
TTGATACGAGACAAGACTCCGTACATATCTTGACACAGCAGGGAGCAATC
AAGGATTAACGTTCTCCACGCTACACAGCGGTTTCGATAAGCAATACAGA
TCCTCGGCATTCAACAGTAATAGAGTCAACCTCTACAGCAATACCAGAGC
ACTCAATCCTCACAGTAAAAAATTAATACATTCAATACGTCCCCTCTATA
TGTTCATGCATGATAATATTCTCGGACAGGCAGTCAGTCTCTGGTGTGAT
CGTACACTACTTAAAGTAAGAGTACCTGGTGCCGTGTACACATTTCCCGT
TGCCTTTTTCCACGAACTGTAGACATGTGCTAGCGTCTACTCCACAGCAG
TGGTTTTTGCGTTGGTTTCACTACCGCTTACTGCTCAGTGGCTGTACAAG
GGATGTTGGAACACAGCAGTCGCTCTGGCATTTCACAACCATTGCGGCAG
TTCGTTCCCTGCGAAATAACAGCATTGCACTGACCTTTTTCTTGGACGGT
GACCAAGTCGGTGTTACCCGGTCGCCCCGGTGGTCTAGTTGGTATCTTCG
AAACCTTGAAGAGGTGGGGTGCGAATCCTGGCGTAAGCGAGCTTTTCTTG
CAAAGTAAGTTTTTCTCTCGCTTCCGCTCCTGGCCCAGTGGATAGCGCTA
GTTGGTGTGTACACAGAGGGAAGAGAGTGCTGAACTCCTCTCGCATTAGA
AATCGAAGGCTAAGTACCGCAGGAGGGGAGGGTAGACGGGGGATTTTCTG
TGTGACCACGGGGTGGAGTAAACGGCGCTATGCAAAGTGCTGTGAGGGCT
GATTTGAAGCGAAGACAAAAAAAAAGAAAAAGGTCGGTCATAATCTCCTC
GCGAGAGAGAGCGAAGGTACATGCTGCGGTGCTTTGGTTTGTTGCTCTAA
ATAATAGAAGTTCAGAGTTTTGATAAACTGCCGTACTATGCGACATGATC
AAGTGCATCACCGGTTTTTGACGTGAACCGAGTACGCCATGATCTAGACT
TTGTCTCAACCTTCCGATCTCCGCAAGGGCTATCTGTGAAAGATCGTCAG
ACGCTCCTCGGTCACAAGCTATTACATTTACGGTAACGAGAGCAAGGTTT
AAACATAGCCAAACATACAACAGCGTCGAACCAAGAAAAATCGTATGCAT
GGCACAGAGGGCACCCGCACTTCAAGAAACTTCGCAGTGACGACATTGAT
ATACAGTAGCCCCGAAATAACTCAAAGTAAAAGAACTTGAGCATAATTCA
TGAGCTCGGTTATTGTAAGATTCCCGACACTAAAAACTACATACCGAACA
ATCGTAGAACAATCCTAAATAGGAACTAAGAACCCCCTGTCTCGGCCACA
ACTAGAGGATGGTTCGTATGTGCGGGCGCTTTCTGCATACCTATCGCGAG
AAACACAGGTTCCTTTCGAATCGCGGCCGGAAGTACGTATGCGCGACGAT
TCACCCGTTCCTGCGAACGCATTTTGCGTCGCACGGCTCATTGCCGTCAA
CAGGACGCGTGGTCGATGGTCTTACAACTGCGGCATGCGTTGACATGAGT
ATTCCCCCCCCTTGGTCCGGTGAGAACCCGGCTTGCTCCGTCCCAGCCTT
GTAGGGGTGCGACGTCAATGGTCTAACGACTAAGGCATGCACGACTATGA
GTACACCCCCCCCCGCCACCTCTTGCTCTGGACTACCACTGCTTGCTGTA
GCCGGTGTGCGTTCGGCTCTCTGAAGGGAAGAAGGGTATTACGCGCGACG
GGTCAATGTCGCTGACAACGCGAGAAACGTCAACTTCACGGGTCGACCCG
GTGGCGGTGAAACGGATGACCCCGTTCGTGAGGCCTCCTATCAACCCAGA
GCAGCTGCCGCCAGACTTCCTCGCCCTTCTGTCTTTGACCTTCGGGGTGG
CTGGACTCATGTTGAAGGTGTGTAGTTTATGGTGTTCTTGCTGTGGGGGT
TGTTCCTCGTAGTTGTAGGTGCGTGTGAGATTTTCCGTGGTAGTGCTAAT
AATGTCGTGATCGCTGTTTTTTTTTACATTGCCAGACCTTCGGAAGGACA
CATATCTAAACAGGTCTGACAGACACGCCAAACTCATTGTGAACGCACCT
GTGATTCTACTGGACATGAGTTGAGGGGCAACACATACCGTGGGCGTTCA
TCGGCACCCAAACCTCAAGAGGAAATATGGAGAATCGATTTTGCGTGACC
CTGGCTAGGGTGCCGAACGTGCACCGAAGGTGTAGACTGGCCCACAGAGC
AGATGGGACAATGAGAAAAACTCACAACGGTTCCCCTCCCGATCTGAGTG
CTGACTTCTAGCTTCCCCGTTGGTGAAAATTTCCACCACCCACTGTCAAC
TTACGGTGCATGCTGACCCCTTCGATGTTGCCTCTACGTGCCTTCCTCTT
CTCGTCTCTCGCACCTTGTTTCTTTCCGCGTCTCTTCCGACGTTTCTTGA
AACGATTTGCGGCGCAACCGCCAGTCAACATGGGCATCGTGGGCTAGCGT
GTTCTGCTGCATGTCCAGCCTAGGAAACATCAAGGTCCACGAGGCTGACC
CGAAGCAAATTGGTTGCTCCGTTCTGTGAGTAGACAAGTCTTACGCTCCC
ACGCTCCCCTTGTGTTGGCTAGACTGCACTGCTATTACGTCAACAATACA
GAGTCGACATCATACTCCATGACATTATTTGAGACCTGTTCGTGACTTAT
AGTTGTATCAACAACCACGAAGACGACCGACATTGCTGTGAGAACATCAC
CAAAACCATCAACTAGACACTCTAGCATCTGCCACTCGGACAGCCCGACA
CTGCTGAACGTCCTAATTTCCAAATCCGGCCTCGTGCGTCGCTCGCGACG
GTTACAACTATACAGTTTGCGCCCGCACTTACGAACTTGGCAGCCACTTA
AGAAATCGATGTAGCCTCGAAAAATTCAACATTTAAGAACTTGAGCACTA
TCAATGAGCTCAGTCACTGTAAGAACCACTACACTATAAACTATGTTGCG
GCCGTTCGTACAATGTCCCTAGGGAAGTACTTAAGAACCCCAGTCTCGGT
CGCAACTAGAGATCCGTTCGAAAGTGCGGGTGCTAACTGAAGGGGTTACC
CCTCAAGCATCGTCGTCGCTGACAAGTCGTTGTTGGTTGTTTTGCTGTTG
TCGCTCCGGTCTTTACCCTCCTCCTCTGGCACAGGTTTGCCTGTATGGGC
TTGTTCATGAACTACTTCGGTCCGGCCAGTCGACCAATCGTGTAGTGTAG
TGCAGGTGCTTAGCTGGCTGCCAGATCGGGTACAAGAGGGCAACAGCAGC
GACGATCACTTCCTCAGGCCCTTGGCGGGGATTCTTGTCGGAGCGAAGCA
CCGACGATCACATCCTTAGACCCTTGACGGCGAGTCGCCTCAACACGGGG
CGGCCATCTTAGAATCTCCGGAATCTCCGAAACGAAGCTCCCTCTCCACA
AAGGGTTTCTGTTTGGCTTTGATTGCCCATTGCCGCCGGAGGCGAAACTG
GTGGCGCACTGCAGACAAATCAATAGCGGTTCTTCCGGAGCACTGAATAG
CCTAGTGGCTGAACGTTTCGCTTGGCGTAGAGCACACCCATCTGTCGTTT
TCCGTCGCCGACAACCGGTCTCCACAGCATATATCCTCGGGGGCCTATTT
TTGTGTGGGAACATGCAGATTGCCGTCTGCTCCTTTCGGCAGATAGTGAA
TGGACTAACCTGAAGCAGTGCATGCCAGGAGGATAGTATATGGCCTTGTT
GTTAGCTGTGGAACCAACACAATCCACAGGCGGGGTTTTGGTTCGCGTTG
GAGGAAGGCGACGGCGGTGTTGTTGGTGTCGTCTAGGAAAGGCCAGAGCA
CTACTTAAGTAGAGGCATGTATGTACATACTGGAGCGACGCGTGAGATGA
CGTTTTGATCGTACTTGTCTTTGAAGCCGTTTGTGTTGTATTGTCGTGTT
TGTGATGTTTTCTCTGGCCTTTTTGTTTTCTTTTTATTTTCGAAGTTTAC
ACCCATTTTCGGGGGGGGGTAGTCGGTGTTTGGTGGCCGCGGGAGGCGTC
CGCGTCGGTTGGGTCGGCACGGATGTAAGAAGGTCCTGAGCAGAGACTGG
AGCGAGTGATACCGCCAAAGCAAATGTAATGTGTAACGCTTGCCCTTCCT
GTTTGCTTGCGTCAAGTGCGTAGAACAGGAAGCTATGAAATAGTAGTGCT
ATTTCAGTAGCCAACTTTGACCGCGCTAGCGGCCGGAGTTCACGTCCATC
ATCAGTTTTACCCTCCGCGACGGGATGAAGACTTGCAAAGAAAGCCAAAC
GGACGGGTCTTTCTTCGCCTTCGCGATGAAATGTTTTTGTGTTTTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig918:795..5241-

>mRNA_Ecto-sp13_S_contig918.20751.1 ID=mRNA_Ecto-sp13_S_contig918.20751.1|Name=mRNA_Ecto-sp13_S_contig918.20751.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig918:795..5241- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCTGACAACGCGAGAAACGTCAACTTCACGGGTCGACCCGGTGGC
GGTGAAACGGATGACCCCGTTCGTGAGGCCTCCTATCAACCCAGAGCAGC
TGCCGCCAGACTTCCTCGCCCTTCTGTCTTTGACCTTCGGGGTGGCTGGA
CTCATGTTGAAGTCAACATGGGCATCGTGGGCTAGCGTGTTCTGCTGCAT
GTCCAGCCTAGGAAACATCAAGGTCCACGAGGCTGACCCGAAGCAAATTG
GTTGCTCCGTTCTGTTTGCCTGTATGGGCTTGTTCATGAACTACTTCGGT
CCGGCCAGTCGACCAATCGTGTAG
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