mRNA_Ecto-sp13_S_contig9179.20750.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9179.20750.1
Unique NamemRNA_Ecto-sp13_S_contig9179.20750.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9179.20750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9179contigEcto-sp13_S_contig9179:1744..5828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464189.309896-CDS-Ecto-sp13_S_contig9179:1743..18211681464189.309896-CDS-Ecto-sp13_S_contig9179:1743..1821Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9179 1744..1821 +
1681464189.3215156-CDS-Ecto-sp13_S_contig9179:5750..58281681464189.3215156-CDS-Ecto-sp13_S_contig9179:5750..5828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9179 5751..5828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9179.20750.1prot_Ecto-sp13_S_contig9179.20750.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9179 1744..5828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9179.20750.1

>prot_Ecto-sp13_S_contig9179.20750.1 ID=prot_Ecto-sp13_S_contig9179.20750.1|Name=mRNA_Ecto-sp13_S_contig9179.20750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
ESRETGGHGARRAGPPSDRAPRTTGQSQAGGVVVKPAVGVAAREDSRDRG
AA
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mRNA from alignment at Ecto-sp13_S_contig9179:1744..5828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9179.20750.1 ID=mRNA_Ecto-sp13_S_contig9179.20750.1|Name=mRNA_Ecto-sp13_S_contig9179.20750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9179:1744..5828+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGCCGAGAGACCGGCGGACACGGTGCAAGACGAGCGGGCCCGCCGTC
GGATCGCGCACCCCGCACCACAGGGCAGGTGAGAGGAGAGGGGGCAAAAA
ATATAAGTCTACCGGATACTACACCACGTAACACATCCGGACCGATTTCA
AGCTCGATGTACCAACAAGAGTCGTAGCGCCGATAACGGTGGCGTGGAAG
CCGTCTGGTCGAGAGCTCTCCGAAAACGTATCGTTTCGTTTGTGCATCCT
CTTCCGCGTCCAGAAGTCGAGCTTTGAAAATCGGTCCAGGGGGTGTATTG
TCTCAAGTGCTATTCGGTACAACTCAAGAACAACGGTGCCACATCCCGTG
CTGCTGTGCTGCACTGCTCCACTCGAGCTCGGAACAAGGGCAGGGTGACG
GCCTGGCTTCGCTCCCTTTGCGCGCGCAAGAAAGGTGGCTCTAGCAGGTA
GCAGAAGCAGCCCGATACCCTCAAGAGTGTGTCCTCTCCTCTGAACGAAA
TATTTTCTCGTCGAAATTTCTGCTTCTTTTTCACCACCCGCCCACCCACT
ATGGCGCCGGACGTTACACTCTTTTTCGGGGGCACGCTGGGAAGTCAAGT
GTGCTATGCTGGCACCCGAGAGGAAGACTGTCGTGCTCCCGACATGATCG
GGGTACCCAGAGTCCGTGAAATCGGTGTTGTGTTCTAATTCCGGGCATAT
TCTGAGTATTCTCCGGCCCCAACAAATTCCTTGTCTTGAGCAAGTCTTGA
AGAGTCGTTCTTTTTTTTCCCGTCAACGTATCCATGACAAGCTGCTTTGT
GGTGACATGACGACAATTTGTTGTTGGCTCTTTCGTCGACGTGATCCCGA
TTCATATTTTTGGGCGATAGCAGCAAAGTGATGTTGGGTGGGGGGGGGTT
GCAGTTCGTGACGCAGTGCTTGCGCGAACAGGCTCTAAAGTCGTGCATGT
TTGCTCATGCCAAACTTCTGAAACGTCCGCAAACACGACTTTGTTGGTAA
AGAAGTTGTAACGTAACGTTTCAGTCTTGGCTCTCGAAGTTGTGGAAAAG
GGGAGCTTCGGCAAAACATCGCTGAGAGATACCATAGCCGGAGACTTCTC
GTTGTGGGTGTGAGGCTGACCGTGAGTTGTTCCGGGACGCTCCGTGAGTT
GTCACTTATCTCTATGCATAGTGGATATGTACAGATGCTGCTGAAACGCC
TTTAAGAAGCTGCACACGACCTACGTTCTCAGCGGCTCATTGCCACAAGC
TCGCCCTTAAACTGCTGCGTACCTTACAGCAGTTAATTGCACCTACGGAT
CGGTGCAGGGGGAGAAATAATCCGGGTTGTGTAGAACTGGATCCACGGAT
ATCTGCATACAGCAGGTACCGCCGTTGCACCAGAAAGGTGTGTTCGTACT
TCCATGATGACAACCAACCCGGAGATGAATTTTTCACTTTTTCTGGCCCC
ACAGAGATGCGTTACTTTTCATTCCGTTCCCCCATTTTCATCTCTAAGCG
ATTGATTGGCACATGTGCCCACTCAAAAGTGTGGAAAGAAACAAAACCGT
TGTCAATACCGTTCCCCCCTCGGAGCAACCATCACTCCCCGCAGTCTTTC
CCGTGATCGGTTGAAGTTCGAGGGCTTGATTTCATCAAGTCATGGGTACA
ACCATCGTGAAGAAACCACTACGTAAAACACCGGGTGACCGGCAAACCTC
TACTCTCCATATTTGTCCGTTACACGAGCGTGTTGAACCCCCGAAATCCC
GATGGTCCGTCCCCGGAATGATCGGTTCATCCGCGAATCCGAATCGGTTT
TATATGCCCGTCGTGCGGCTGGCAGTATCGGCTTTATGCTCATCATGTTG
CGTTCCCTGAGACTTAGACTCATGTGGAAAACAGAGGTGGGTTGTTGTTT
TCTCCTGCTGTAAAAGGACGCTGGCCGTCTGGCTCCTCTCTGTCACAAAG
TTCTGCCGCGTAATTATCTTTATCCGAAAACACACGCCCAAACGACGGGA
TTCCCGCGTCGAAATAACGAACAGCCCGGCACCGCTTTCAAACTCAAAAG
GCGGGAATTCCCGCATATTTCTGGATTTTCACGGATAGTAGGCATGCGGG
AAGCGGGAATCGGAGTACGAAAGATGTCTCAGTCGAAATGATGGGACCGC
GAAGGGGCTCCGTGGATGAAAATAGGTTGCCTGCATGGAGGCTTGGAGGT
GAGCGCTCAATCGTGACACGCCTTCCCAACCCAAACGAAGAAGCACGGTT
ACCGAATACCGTAAATGACCCAAGATAAGAGACCCCCCGGAAGGATTTTC
AAATCTCGATTTCTCGACAACAGAAATAATCGCGGCGCCGAAAACCGTGG
CGTTGAAGCTGTCTCGTCGAGACCTTACAGAAAATGCAGTGTTTCATCTT
TGCATGCTTTTCGTCAAGGCGGAATCGAGCTTTGAAAATTGGTCCAGCGG
GTGTGTTATCTTGTGTCATTTACGGTATCAGAAAAAAACCATATGCAGTT
GTGCACAAGGCCGCGGCCAAGGCCATTCCCCGTGGAATATCAGTGAAAAA
AGTTGTGCGCTACGATACGAGCTCGACCATCGAAGCCCTCCCGACTCTGG
CCCTGTCGAGGGTGTGTACCAGCGAGGGCGTCTCGTTGGAAGGTCGGGAC
GGGTTAGGGCTGTTTACCCTTCTGCCTTCTTTGTGACCTACCCCAGCGTA
ATCACGGTATGTAGAGTCAGGTCAAACAGCCCTACCCTGTCTCAAGCGGT
CATCGATGGAGAAGTATGGGGGAAAAATCGAGACAGCGACAGGGAATAAA
AGGCCAACACGTAACATGAAGTAGCGGTGGATCCCGTGCCTTAACTATGG
CACCCCCCGCCTGTATAGACCGATTTTCAAGGCTCGATTGCTCCACAACC
AGCCTTGTGCCAAAACCAAAAGTTGCGGTTTTGGAAACATCTCGTCAAGG
GCTTTCGTAGACGTATCGGGCTCATTTACGCACCCCCTTGGCTGTGGAGC
AATTGACCTTCGAAAGTCGGCCTAAGGGGGGTGCCATCTCTCCGCCCTCT
ACGGTACACGTGGAACAGAGGGAAAGGTGTTGGAACCCTTTCGTTTACGC
TTCGTCGTTTGTAGTTACAGATATTCTTAATGTGCTCCACCCTGATGCGT
CCGAGACTGTGCTGTGTTTGTTGCATTCGTTCACGGACAGTTGATTCGAC
ATGAAGGTGAGGTACTGCTGTAGAGATGTGACTCGAGGCTCACCGGCGAA
CAGCTTCGAAAAAGTCGCCGCCGCCGCCGCCGCAGAAGACAGAGCGCCGA
CGCCAGTCGGTGCCAGAGCGGGAGCGGCGGGAGCTCGTTCATTCCTGTTC
CATACGCCTGTGTGTGATAGCGAGAGCTTCTTTTTTGAGCGTGAAAGTCT
TGGCGTAGAAAAGAGTTGCTTGCTGTCGATACTTGACTATCTTGGACACA
GCTGTTCAGCAACGGGCCGCGAGTGTATCCTACGCTGCTAGGTCGCCGCC
CGGCTTCGCGCGCTTTCTACGGCAGCATCCCGACCACCCGGCTGGTTTGA
TTTATGTACAGCTGTATCAATATCTGCCATCATCGCACTCTACTTGCTAG
CCTTCTGAAATAAGCAACCTGGCTTTGAGTAAACCTCTGTGAAAATTGTG
CGCGCTGTGGACCCTGGTCCTCTTGCCAGGTGTAAGGCCCATTGGCAATT
CACACTTGTTGTGGCTGTTCAGCCTATGCTGGAATCTTGGACAATTCTGG
AATCAAACAATGCGAAAAACCCCGCCGAGGATCGGCGGAACGTCTGTGGA
TACCGCCGTTGGCATCAGAGAGATACTTGCGTAGCGTGCTTCAGCATCCT
TGGCCTCGAATAAAGATCCTGCGGATATATAGACTATAAGTACAATTTTC
CCTCGCCCTTGCCAGGTAGACTTTCTGCTTCTTGAGCTCCTCCACTGGCG
ACCAAACTGGCGCGTAACTGTTTGCGACGAATCTGGAATTAAACCATGGA
AAGAAAGTCACAGGCTGGCGGGGTGGTCGTTAAACCTGCTGTTGGTGTTG
CGGCTCGGGAGGACAGTCGAGATCGAGGAGCAGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9179:1744..5828+

>mRNA_Ecto-sp13_S_contig9179.20750.1 ID=mRNA_Ecto-sp13_S_contig9179.20750.1|Name=mRNA_Ecto-sp13_S_contig9179.20750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9179:1744..5828+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGCCGAGAGACCGGCGGACACGGTGCAAGACGAGCGGGCCCGCCGTC
GGATCGCGCACCCCGCACCACAGGGCAGTCACAGGCTGGCGGGGTGGTCG
TTAAACCTGCTGTTGGTGTTGCGGCTCGGGAGGACAGTCGAGATCGAGGA
GCAGCT
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