mRNA_Ecto-sp13_S_contig9178.20749.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9178.20749.1
Unique NamemRNA_Ecto-sp13_S_contig9178.20749.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9178.20749.1 vs. uniprot
Match: D8LJH5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH5_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.250e-29
Identity = 68/128 (53.12%), Postives = 85/128 (66.41%), Query Frame = 3 
Query:  201 FSANDNKRLDDVVLMAEKWIPVLTSFVGKGFDRKHISRNVFQ---------KGLGRIEQRLPALKNRSSVVNGDDSKTRAPRPPFVSTSGTVVPISKQVLQEYVLDSDVKGHHGRVMSLCLAVLVVAR 557
            FSANDNKRL  VV MAEKWIPVL SFVG  +    + R+VFQ         KG GRIE++ PAL N S++++G ++++    P FVSTS TVVP++KQVL EY+     KG+  RVM L  AVLVV R
Sbjct:   95 FSANDNKRLAAVVRMAEKWIPVLMSFVGGSYKDDGMGRDVFQTGITKKVFKKGFGRIERKFPALTNTSTLISGCNTRSGELIPAFVSTSTTVVPVNKQVLLEYIDPCTEKGYDARVMYLTFAVLVVDR 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9178.20749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJH5_ECTSI2.250e-2953.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9178contigEcto-sp13_S_contig9178:4891..6464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size557
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_006190.1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464189.231122-UTR-Ecto-sp13_S_contig9178:4890..50251681464189.231122-UTR-Ecto-sp13_S_contig9178:4890..5025Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9178 4891..5025 +
1681464189.2486823-UTR-Ecto-sp13_S_contig9178:5806..58681681464189.2486823-UTR-Ecto-sp13_S_contig9178:5806..5868Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9178 5807..5868 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464189.267448-CDS-Ecto-sp13_S_contig9178:5868..61561681464189.267448-CDS-Ecto-sp13_S_contig9178:5868..6156Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9178 5869..6156 +
1681464189.2783127-CDS-Ecto-sp13_S_contig9178:6392..64641681464189.2783127-CDS-Ecto-sp13_S_contig9178:6392..6464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9178 6393..6464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9178.20749.1prot_Ecto-sp13_S_contig9178.20749.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9178 5869..6464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9178.20749.1

>prot_Ecto-sp13_S_contig9178.20749.1 ID=prot_Ecto-sp13_S_contig9178.20749.1|Name=mRNA_Ecto-sp13_S_contig9178.20749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MFSANDNKRLDDVVLMAEKWIPVLTSFVGKGFDRKHISRNVFQKGLGRIE
QRLPALKNRSSVVNGDDSKTRAPRPPFVSTSGTVVPISKQVLQEYVLDSD
VKGHHGRVMSLCLAVLVVAR
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mRNA from alignment at Ecto-sp13_S_contig9178:4891..6464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9178.20749.1 ID=mRNA_Ecto-sp13_S_contig9178.20749.1|Name=mRNA_Ecto-sp13_S_contig9178.20749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1574bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9178:4891..6464+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGTGGGGAGGGCAAGAGGTACAGGTCGCCGGTTTACGCTGTGTACGC
GATGGCACTCCACCCCTCGAGCGCGTTCGTGACCGGCATTACCGAACACC
TACAACGGGCAAAGAACGGCGAAATCATCGAACATGTGAGCACAACGTAT
GTAGTACAGCGACGAAGTGTTACCATGTCTTCTTTGGGTACATGGATGTA
GAGATCGGAGCGTATTTTTTGTGAGGAAAACAACAACATGCAGGCTTGCT
CCGCTGTACTGCGGTACGTCGATAAAAATGAATAGTCAGATTCGTGCGCA
TTGTTCGTTGTTTTGGTAGGGTTCGCTATCCTCTTTTCGACGGTTAAACG
TCAACTATCTGTTGTTGTTGTGACACGTCACGACTGTCGGTTGGCAGCCA
GATGTGTGTGCGTTTGGTCCTCAACCCTCTGCTCGTTATATATGCCTTCA
ATGTTTTTCGGATCACTTGGTGCTTACATTGTTTCTTCCATCGCAAAATC
GTAGATTTATAATCACAAATATACGTTCGCGGTATAGGCCTTGGCGCTGT
CAGGCATCGACTTCTGTGCTGGATCTCGAGGTGACCGGTTCACTTCTGCG
TCTATCAGCCCACTCACAGAGGAAGAACGGGGTGTTTACCGCACTGAACG
AACACGGGATTACGCACGCAGCACGCAAACCCATGAAGGAGTTTGGTCTG
GTGGAAGTTTTATAAGAGTTGGTCGCGTTGCTGGCCCTTCGCGTACACGT
CGACAACTTGTGGGAGTCCAGTGTTTTGAAAGAGGATGCTCCCGGTGTTT
TTGACCACGAGGTTGAAGTACCATTGAGCAAGGGGAAGGGAAAGCCGGAA
TCAACCAGGGGGGGAGGGCCGAACGATGCAAAGAGCGGCTTGTCGGGTGA
CGAGTCAGAGATCAAGTGTGATCCTGACGTGTTCGAATTTTTCGAATACC
TGCTTGAAGCATTCACGGACGATGCGAGATGTTTAGTGCCAACGACAACA
AGCGCCTTGACGATGTCGTACTGATGGCGGAGAAGTGGATTCCTGTCCTG
ACATCATTCGTGGGAAAAGGCTTTGACAGGAAACACATCAGTCGGAACGT
ATTTCAAAAGGGCTTGGGAAGGATCGAACAGAGACTCCCGGCCCTAAAGA
ACAGGTCTTCCGTGGTGAATGGCGACGATTCCAAGACTCGAGCGCCTCGT
CCTCCGTTCGTGTCAACCTCGGGTACCGTCGTACCCATCAGCAAACAAGT
GCTGCAGGAGTACGTGGTGGGTGTCGACGATTGAGTCTCACGCCAACGTT
CATGTTCCTGTGTCAGTTACAAGTAGATTGAGGTCTTCGTGCTCTATTGT
TGCATATCTGTGTTGCCCACTCTGCGTGCTCTACTGTTGGTACGGGTTGC
ACGCATGCGCTGTCCTCCAGTTTCATCATTGTTTCATGGGTTCCCGCTAA
CGTCTCTGCTTCGTATTTCTACTCTCGACCTGTACTGCCTCTTCTCTCTC
AGCTTGACTCAGATGTCAAGGGCCACCATGGCAGGGTGATGTCCTTGTGC
TTGGCGGTCTTGGTGGTCGCCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9178:4891..6464+

>mRNA_Ecto-sp13_S_contig9178.20749.1 ID=mRNA_Ecto-sp13_S_contig9178.20749.1|Name=mRNA_Ecto-sp13_S_contig9178.20749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9178:4891..6464+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTAGTGCCAACGACAACAAGCGCCTTGACGATGTCGTACTGATGGC
GGAGAAGTGGATTCCTGTCCTGACATCATTCGTGGGAAAAGGCTTTGACA
GGAAACACATCAGTCGGAACGTATTTCAAAAGGGCTTGGGAAGGATCGAA
CAGAGACTCCCGGCCCTAAAGAACAGGTCTTCCGTGGTGAATGGCGACGA
TTCCAAGACTCGAGCGCCTCGTCCTCCGTTCGTGTCAACCTCGGGTACCG
TCGTACCCATCAGCAAACAAGTGCTGCAGGAGTACGTGCTTGACTCAGAT
GTCAAGGGCCACCATGGCAGGGTGATGTCCTTGTGCTTGGCGGTCTTGGT
GGTCGCCCGT
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