mRNA_Ecto-sp13_S_contig9163.20735.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9163.20735.1
Unique NamemRNA_Ecto-sp13_S_contig9163.20735.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: D8LUD2_ECTSI (DRMBL domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUD2_ECTSI)

HSP 1 Score: 680 bits (1755), Expect = 3.460e-240
Identity = 365/410 (89.02%), Postives = 371/410 (90.49%), Query Frame = 1
Query:    1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDLDTNSPVTLREVLAKARADGAPFTSVVGVRPTGWTHTNVRKGGEGGGKAGGIQSSIGGRAASAAAGGQAVRSGDEGRGEAGKEGSGITSSSKPQDGVGDDISGEPELLSGWEEQDDEAAAWGAGLEEDENEETVQVATNGVGVLPXXXXXXXXXXAVAGPAVGPWTGKKPWVDGVARVYSLPYSEHSSFTQLKDFVRTVRPK 1230
            MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGF+LTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVV SLKGRLDSLYLDTTYCGPRHTFPDQSEVL QATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAK        DTNSP TLRE L KARA GAPFTSVVGVRPTGWTHTN RKG       G I+SSIGGR+     GG AVRSG E R E GKEGSGITSSSKPQD VGDDISGEPELLS WE+QDDEAAAWGAGLEED NEET+QV  NGVGV+PXXXXXXXXXX VAGPAVGPWTGKKPWVDGVARVYSLPYSEHSSFTQLKDFVRTVRPK
Sbjct:    1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFDLTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVKSLKGRLDSLYLDTTYCGPRHTFPDQSEVLAQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAK--------DTNSPATLREALTKARAGGAPFTSVVGVRPTGWTHTNARKGXXXXXXXG-IKSSIGGRSXXXXXGGPAVRSGAEEREETGKEGSGITSSSKPQDSVGDDISGEPELLSEWEDQDDEAAAWGAGLEEDGNEETMQVTANGVGVVPXXXXXXXXXXTVAGPAVGPWTGKKPWVDGVARVYSLPYSEHSSFTQLKDFVRTVRPK 401          
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A8J9WR85_9CHLO (Probable DNA cross-link repair 1A protein at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR85_9CHLO)

HSP 1 Score: 223 bits (568), Expect = 8.910e-62
Identity = 123/279 (44.09%), Postives = 158/279 (56.63%), Query Frame = 1
Query:    1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGG-----RTTLHTGDFRAAESVCRNPVVMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDLDTNSPVTLR---------EVLAK----------------------ARADGAPFTSVVGVRPTGWT 729
            MA Q E IKWV  +PFMVDGFRF  PRC+HY L+H+HSDHT GL  SFSAG IYCS  TANL+V+ M +N   +  LP+DTP+LV G  +TLIDANHCP AV+F+ + P P G     +  LHTGD R    + R+P +   K R+D L+LDTTY  P+H FP Q   +    +++R E    P TLF+VG+Y IGKE+     AKA G +  ++ +    LR          +L K                       R  G  +T VV  RPTGW+
Sbjct:    1 MAEQVENIKWVPNTPFMVDGFRFQTPRCKHYWLSHYHSDHTIGLSTSFSAGTIYCSKVTANLLVKDMRINPSCIQPLPLDTPLLVDGVHVTLIDANHCPGAVLFLFKTPAPPGSEFPEQVILHTGDMRWHPRMGRHPALA--KQRIDMLFLDTTYASPKHVFPCQENAIADIVKVMRKERDAHPRTLFIVGSYRIGKERAYLGAAKALGWKVYVNADKLRVLRLLGLPDSDMALLTKDAAAAQIHVSFMGKLLTPDALTERIRGTKWTHVVAFRPTGWS 277          
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A1Y1HYN4_KLENI (Putative DNA repair metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HYN4_KLENI)

HSP 1 Score: 216 bits (550), Expect = 1.210e-58
Identity = 118/277 (42.60%), Postives = 155/277 (55.96%), Query Frame = 1
Query:    1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTT---LHTGDFRAAESVCRNPVVMSLKGRL-DSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRY----------------DLDTNSP--------------VTLREVLAKARADGAPFTSVVGVRPTGWT 729
            MA Q E IKW+ G+ FMVDGF+F N RCR Y LTHFHSDHT GLY+SF++G I+CS  TA L++  MG+  + +  LPMD  V + G E+T +DANHCP +VM + + P  GGR     LHTGDFR  E +   P   SL+  L D++YLDTTY  PRHTFP Q + +    +L R  L  +   LF+ G Y IGKE+ +   AKA G R                 D+D  +P              V    +L + +  G  +  V+G RPTGW+
Sbjct:    1 MALQQEAIKWIAGTDFMVDGFKFQNLRCRRYFLTHFHSDHTIGLYRSFNSGTIFCSRITAALLINCMGLRSDCIQVLPMDKTVTIDGVEVTALDANHCPGSVMLLFKVPGHGGRPAQVILHTGDFRYHERMADYP---SLRNTLIDTIYLDTTYAYPRHTFPSQEDAIATTVRLCRKHLLDEARPLFVFGAYQIGKERAVIGAAKALGLRVHIEPRKRRILSLLDLQDMDLFTPNAADADIHLGFMSEVRPPAMLRRLKEGGGKWAQVIGFRPTGWS 274          
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: I0YMI9_COCSC (DRMBL-domain-containing protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YMI9_COCSC)

HSP 1 Score: 198 bits (504), Expect = 7.520e-57
Identity = 109/269 (40.52%), Postives = 153/269 (56.88%), Query Frame = 1
Query:   31 VEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGG-----RTTLHTGDFRAAESVCRNPVVMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDLDTNSPVTLREV------LAKARADGA-------------------------PFTSVVGVRPTGWT 729
            V  + FMVDGFRF + RC+HY L+H+HSDHTTGL  SFS+G IYCS  TANL+V+ M +N   +  LP++ P+LV G  +TLIDANHCP AV+F+ + P P G     +  LHTGD R    + R+P + +   R+D L+LDTTY  P+H FP Q + +    ++++ E +  P TLF++G+Y IGKE+     AKA G +  ++ +    LR +      +A    D A                         P+T VV  RPTGW+
Sbjct:    1 VPNTRFMVDGFRFQSSRCKHYWLSHYHSDHTTGLTTSFSSGTIYCSAVTANLLVKDMHINPSCIQPLPLNIPLLVDGINVTLIDANHCPGAVLFLFKTPPPPGSEFSEQVILHTGDMRWHPRMGRHPALKNQ--RIDMLFLDTTYASPKHVFPCQEDAIADIVRVMKQEAKARPGTLFIMGSYRIGKERAYLGAAKALGWKVHVNADKLRVLRLLGLPENDMALLTRDAAAARIHVSFMGKLLTPDALTDRIRAGPWTHVVAFRPTGWS 267          
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: W7THR8_9STRA (Dna cross-link repair 1a protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THR8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 3.790e-56
Identity = 100/209 (47.85%), Postives = 132/209 (63.16%), Query Frame = 1
Query:    1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPV--VMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRY 621
            MA+Q E+IKW+EG+ F+VDGF F +P+C  Y LTHFHSDH  GL  SF  G IYCS  T  L+V  +GV  + V  LP++ P  + G E+TL+DANHCP AVM +  + +    T LHTGDFRA+E++       +     R+  LYLDTTYC  ++TFP Q  VL   +++   E    P+T+F VGTYSIGKE+ + AVA   G  Y
Sbjct:    1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTKS-TILHTGDFRASEALTERTASWIRDRDLRVRILYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGWSY 208          
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A4D9CSH8_9STRA (DRMBL domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSH8_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.760e-55
Identity = 104/220 (47.27%), Postives = 138/220 (62.73%), Query Frame = 1
Query:    1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPV--VMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDLDTNSPVTLR 654
            MA+Q E+IKW+EG+ F+VDGF F +P+C  Y LTHFHSDH  GL  SF  G IYCS  T  L+V  +GV  + V  LP++ P  + G E+TL+DANHCP AVM +  + +    T LHTGDFRA+E++       +     R+ +LYLDTTYC  ++TFP Q  VL   +++   E    P+T+F VGTYSIGKE+ + AVA   G  Y  D +   TLR
Sbjct:    1 MASQVERIKWIEGTSFLVDGFNFLSPKCSAYFLTHFHSDHYWGLRPSFCHGTIYCSDVTGALLVGKLGVKPQFVHTLPLEKPTTIQGVEVTLLDANHCPGAVMLLFHNKKTN-TTILHTGDFRASEALTERTASWLRDRDLRVRTLYLDTTYCNAKYTFPSQPSVLAALSRIAEREKAERPSTVFYVGTYSIGKERAVRAVAAGIGKVY-ADKHKERTLR 218          
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A7S2WP51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WP51_9STRA)

HSP 1 Score: 187 bits (475), Expect = 4.000e-54
Identity = 100/196 (51.02%), Postives = 118/196 (60.20%), Query Frame = 1
Query:    1 MATQDEKIKWVEG--SPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSL--KGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGK 576
            MA Q   IK V G  S F+VDGF F    C+ Y LTH+H DHTTGL+  F  G IYCS  TA L+V  +GV  + V  LP+     V G  +  +DA HCP AVMF   DP   GR  LH GDFRA E V  +P + +   +G LD LYLDTTYC P HTFPDQ  VL     +VR EL ++  TLF+VGTY IGK
Sbjct:    3 MAAQTSSIKAVRGLSSRFIVDGFNFVEAECKSYFLTHYHGDHTTGLHAGFDLGTIYCSEVTARLVVHDLGVASKLVCVLPLHEWTTVEGVHVMPVDACHCPGAVMFFFDDPT-AGRRVLHCGDFRAEECVVESPHLAAALARGPLDELYLDTTYCRPTHTFPDQPAVLRDVEAIVRHELGQERRTLFVVGTYQIGK 197          
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A0A8J5XFD5_DIALT (SWIM-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XFD5_DIALT)

HSP 1 Score: 199 bits (505), Expect = 2.020e-52
Identity = 108/214 (50.47%), Postives = 135/214 (63.08%), Query Frame = 1
Query:    1 MATQDEKIKWVEGSP---FMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSL--KGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYDL 627
            MA+  E +K +  +    F+VDGF F  P    Y LTH+H DHT GL  SF AG IYCS  TANL++ +  V+ +RVVAL +D   LV G E+T  DANHCP AV    R+PR G  T LHTGDFRA   VC +P +  L   G +D+L+LDTTYC PR  FP Q+ VL     L R EL R+P TLFL+G+Y IGKE+ + A+A A GS  D+
Sbjct:    1 MASAREALKRLPDAVAPHFIVDGFSFQRPDLTAYFLTHYHGDHTVGLNASFCAGTIYCSQITANLVIAVGLVDAKRVVALALDETSLVDGVEVTPFDANHCPGAVCLHFRNPRTGA-TALHTGDFRAERCVCESPTLARLLAAGPVDTLFLDTTYCAPRWRFPAQAAVLASLRDLARAELAREPLTLFLIGSYEIGKERAVFALASALGSPVDV 213          
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: A7RZG8_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RZG8_NEMVE)

HSP 1 Score: 181 bits (459), Expect = 5.590e-50
Identity = 105/268 (39.18%), Postives = 147/268 (54.85%), Query Frame = 1
Query:   25 KWVEGSPFMVDGFRFTN-PRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSLKGRLDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVAKATGSRYD--------LDTNSPVTLREVLAKARADG-----------------------APFTSVVGVRPTGWTH 732
            K +  +PF+VD FR+ + P  + Y L+HFH DH  GL K FS   IYCS  TANL+   + V++  + ALPMDTPV+V   ++TL+DANHCP AV+ +     P G+T LHTGDFRA+  +   P + +    +D+LYLDTTYC P++TFP Q E +  A       +  +P TL + GTY+IGKEKV  A+AK  G +          LD+     ++ V+   +++G                         FT VV  +PTGW H
Sbjct:    6 KKIPDTPFVVDAFRYGSIPGIKVYFLSHFHYDHYGGLKKGFSH-PIYCSKVTANLVESKIKVSQRYIKALPMDTPVIVDKVQVTLLDANHCPGAVLLLFE--LPNGKTILHTGDFRASREMESYPALANKT--IDTLYLDTTYCDPQYTFPKQEETINFAVTKAAQAVSENPKTLIVCGTYTIGKEKVFLAIAKELGCKVTVQSDKKRILDSLESDFIQSVITTDKSEGRIHVLPMGKLNHQHLSSYMDQFKGKFTRVVAFKPTGWEH 268          
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Match: E1ZBA0_CHLVA (Lactamase_B domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZBA0_CHLVA)

HSP 1 Score: 184 bits (466), Expect = 3.100e-49
Identity = 103/209 (49.28%), Postives = 128/209 (61.24%), Query Frame = 1
Query:    1 MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSAGKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPAAVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSLKGR-LDSLYLDTTYCGPRHTFPDQSEVLEQATQLVRMELQRDPN--TLFLVGTYSIGKEKVLEAVAKATGSR 618
            MA+Q E IKWV G+PF+VDGFRF +P CR + LTH HSDHTTGL +SFSAG IYCS  TA L+   MG+  + +  LP+D P  + G E+  IDANHCP AVMF+ R P     T LHTGD R    + ++    +L GR +D L LDTTY   + TFP Q EV+E   Q +  E    P    LF+VG+Y IGKE+       A G R
Sbjct:    1 MASQVEAIKWVPGTPFLVDGFRFQHPACRAFFLTHMHSDHTTGLSRSFSAGPIYCSPITARLLRCDMGIRPDLIRILPLDLPTTICGVEVVPIDANHCPGAVMFLFRAPT----TILHTGDVRWQAGMAQHA---ALTGRQVDVLMLDTTYSQRKWTFPPQEEVVELMVQAMAREAAAGPPGAVLFVVGSYHIGKERAYLGAGAALGWR 202          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9163.20735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUD2_ECTSI3.460e-24089.02DRMBL domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A8J9WR85_9CHLO8.910e-6244.09Probable DNA cross-link repair 1A protein at N-ter... [more]
A0A1Y1HYN4_KLENI1.210e-5842.60Putative DNA repair metallo-beta-lactamase family ... [more]
I0YMI9_COCSC7.520e-5740.52DRMBL-domain-containing protein (Fragment) n=1 Tax... [more]
W7THR8_9STRA3.790e-5647.85Dna cross-link repair 1a protein n=1 Tax=Nannochlo... [more]
A0A4D9CSH8_9STRA1.760e-5547.27DRMBL domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S2WP51_9STRA4.000e-5451.02Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8J5XFD5_DIALT2.020e-5250.47SWIM-type domain-containing protein n=1 Tax=Diacro... [more]
A7RZG8_NEMVE5.590e-5039.18Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
E1ZBA0_CHLVA3.100e-4949.28Lactamase_B domain-containing protein n=1 Tax=Chlo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9163contigEcto-sp13_S_contig9163:3559..6408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score685.3
Seed ortholog evalue1.8e-194
Seed eggNOG ortholog2880.D8LUD2
Model size1233
KEGG koko:K15340
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.protection from non-homologous end joining at telomere
EggNOG OGsCOG1236@1,KOG1361@2759
Cds size1233
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464188.179167-CDS-Ecto-sp13_S_contig9163:3558..36731681464188.179167-CDS-Ecto-sp13_S_contig9163:3558..3673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9163 3559..3673 +
1681464188.1922014-CDS-Ecto-sp13_S_contig9163:4187..43801681464188.1922014-CDS-Ecto-sp13_S_contig9163:4187..4380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9163 4188..4380 +
1681464188.2025146-CDS-Ecto-sp13_S_contig9163:4612..47901681464188.2025146-CDS-Ecto-sp13_S_contig9163:4612..4790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9163 4613..4790 +
1681464188.213649-CDS-Ecto-sp13_S_contig9163:5017..51581681464188.213649-CDS-Ecto-sp13_S_contig9163:5017..5158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9163 5018..5158 +
1681464188.2243707-CDS-Ecto-sp13_S_contig9163:5802..64081681464188.2243707-CDS-Ecto-sp13_S_contig9163:5802..6408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9163 5803..6408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9163.20735.1prot_Ecto-sp13_S_contig9163.20735.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9163 3559..6408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9163.20735.1

>prot_Ecto-sp13_S_contig9163.20735.1 ID=prot_Ecto-sp13_S_contig9163.20735.1|Name=mRNA_Ecto-sp13_S_contig9163.20735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp
MATQDEKIKWVEGSPFMVDGFRFTNPRCRHYLLTHFHSDHTTGLYKSFSA
GKIYCSHGTANLIVELMGVNRERVVALPMDTPVLVAGFELTLIDANHCPA
AVMFVIRDPRPGGRTTLHTGDFRAAESVCRNPVVMSLKGRLDSLYLDTTY
CGPRHTFPDQSEVLEQATQLVRMELQRDPNTLFLVGTYSIGKEKVLEAVA
KATGSRYDLDTNSPVTLREVLAKARADGAPFTSVVGVRPTGWTHTNVRKG
GEGGGKAGGIQSSIGGRAASAAAGGQAVRSGDEGRGEAGKEGSGITSSSK
PQDGVGDDISGEPELLSGWEEQDDEAAAWGAGLEEDENEETVQVATNGVG
VLPPPSSSSSSSSAVAGPAVGPWTGKKPWVDGVARVYSLPYSEHSSFTQL
KDFVRTVRPK*
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mRNA from alignment at Ecto-sp13_S_contig9163:3559..6408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9163.20735.1 ID=mRNA_Ecto-sp13_S_contig9163.20735.1|Name=mRNA_Ecto-sp13_S_contig9163.20735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2850bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9163:3559..6408+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCACGCAGGATGAGAAAATCAAGTGGGTGGAGGGAAGCCCGTTCAT GGTCGATGGCTTCCGTTTCACGAACCCGCGATGCAGACACTATTTACTGA CGCATTTTCACTCAGGTGATCCAGATGTAATGTGTTGCGACGCTGAAGCT GTGTTACACGTAAGTGTAGCAGTCTGCTGAAGGTGCGTGGTTGTTCTAGA CACTTTCATCCTGCTGTAGAGGTGGCTCGATGCTCCCCGTCGGGTGCGGT TCACTGCAGTATCTCAGGCAAGCCTTTCTGTTTCGACGTGATTCTATTGT AATGGTGTAACGGTAGAGAACGCGCAACACGCAACGAGACCGTGATTTCA AATCGCGGGATGATTGCAGCACTGATGTTGCGCCGCCTGTCAGTGGAGAG CTCGGCTCGGAGAGTGGAGAAGGCCTACAATACTGTAGCTCTCCACCACT GCTGATCCTATGTGTGTTTGTAGCTGAGCATGTTGTTTGATCATCACCAG GCCACCCTGCTACAGCAAGTATCATGTCGTCTTCACACACAAAACTCTCA GCCAGTGTCCGGCTTCCTCCGGCCTCCGACCGCTCTCCCTCCCGCAACGT GCACGAACAATCAACCGACGATGATACAGACCACACGACAGGGTTGTATA AATCATTCTCCGCGGGTAAAATTTATTGCTCTCACGGCACTGCAAACCTG ATCGTCGAACTAATGGGGGTAAACCGGGAGCGCGTGGTGGCCCTCCCGAT GGACACGCCGGTGCTTGTGGCTGGATTCGAGCTGACCTTAATCGACGCCA ACCATTGCCCCGCGGCAGTCATGTGAGACAAACGTGGAAGAGATAGGTAG GGAGAGATAGAGACCGGGATAGAGAACCGCTTGTCTTGGTGTCGTCGTCG AACTTAGGTGGTTTTGCGCGACTCAGCGCAACCAACATGCTCGTAAGTTG GGCATCACAGTACCTTGAGCGGCTGCCGATATCGGAGACCGCGTTGCGCT GGTGTTGTCCCGTCTTTCATTTCTCAACGCGCGTTCTCGCATACCTGGAG ATAGGTTCGTCATTCGCGATCCTCGTCCAGGGGGGCGCACTACATTACAC ACCGGTGATTTCCGAGCGGCCGAGAGCGTCTGCAGGAACCCCGTGGTCAT GTCCTTGAAAGGAAGACTAGACTCGCTCTACCTCGACACTACCTATTGCG GGCCGCGTCATACTTTTCCGGATCAGTCCGAGGTAAGCGGGGGGATGCGG AGGGGACGAGAAACATGGGAGGCTGGTTTTCTGTTCAGAGGCAGTAGAAT AGGGTGGTGTGCATGGCATCTACCGCCTTTTTGGTGTCAGTTTCCTCAAA CGGGAGATTGCCTTTTCCTGCTGTGAGGTGTTTTTTTCCCTGCTCACCTC ATGTGGGCGTGTTCAAACCGCTTGACCTTGTTTGTGATCATCGATACCAC TTCATGCAGGTGCTGGAACAGGCCACGCAGCTCGTGCGGATGGAGCTTCA GCGGGACCCAAACACCCTCTTCCTAGTGGGGACCTATTCCATTGGAAAGG AGAAAGTTCTCGAGGCGGTGGCCAAGGCAACTGGCAGTCGGTACGATCTG GTTGCAGTTGGTTCCGCCTGAAATCCATCCCTTCTCACCTTTCCGGGTAC TTGTCCTGCCGAGGGCGTGATCGAGGTTGAACTCCGTTGAGGAAGTGACG AGCGTTGCTGATTCTTTTGTTCGAATGCGGAGCTGTCCCTTTTCATATGC CTGGTAGTGATACATATAACACTGCAGTTCCCGTAGCAACAATTCTCACA AGCCTTGGTCGTGTAGCACAATCAACCGAAGCGTTTTTTGCCCGGCTTTA GGTTGTCAATTCTTGCGAAGATCTTACCACTGCCTGTGTTCTTCCCTGGG ATGGTCATGGATGCTGATGCTTCCCCGGCAAGCAAGCTTTGGAACCTCTC GGAGTACCAACTACCTGCAATTGGCTTTCCCTGTAGCCAACACATTTTAC TCCGTTTTGCAGCGCAAGAAAAACATCGCGTCAACAACAACAGCAGAGCG CAGGCATTGAAACCACACACCCTGGCGATAACAACAGGTGTCTCGTCACT TCCCGTAAGGCCCGAACGATGCGGCTCTCCGGCACGTGGGATGACACGGC GTACACCACCCACGATGCCACAACAGGAGGGGGCACGCTCGATGGCGATG GCGATGCGCCGGGATACGCCCGAGTGCGCGCGGTTCCCCTTCAGGACACG AATTCTCCCGTGACGCTGCGGGAAGTCTTGGCCAAGGCGAGGGCGGACGG CGCCCCTTTCACCAGCGTGGTGGGTGTGAGGCCGACGGGGTGGACGCACA CCAACGTGCGCAAGGGGGGAGAGGGCGGAGGCAAGGCCGGGGGTATCCAG TCTTCGATTGGAGGGCGGGCCGCGTCTGCCGCTGCTGGCGGTCAGGCGGT AAGATCCGGAGATGAGGGACGCGGAGAAGCAGGAAAAGAGGGCTCCGGAA TCACTTCCAGCAGCAAACCACAGGATGGTGTTGGCGATGACATCAGCGGG GAGCCTGAGCTCCTATCTGGGTGGGAAGAGCAGGACGATGAGGCGGCGGC GTGGGGAGCTGGATTAGAGGAGGATGAGAACGAGGAGACCGTGCAGGTGG CGACGAACGGCGTGGGTGTCCTGCCGCCTCCGTCGAGCTCGTCTTCGTCG TCATCCGCTGTTGCTGGTCCAGCGGTAGGACCGTGGACCGGAAAAAAGCC GTGGGTGGATGGCGTCGCGAGAGTTTACTCGCTCCCGTACTCGGAGCACA GCTCCTTCACCCAGCTGAAGGATTTTGTGCGAACCGTTAGGCCAAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9163:3559..6408+

>mRNA_Ecto-sp13_S_contig9163.20735.1 ID=mRNA_Ecto-sp13_S_contig9163.20735.1|Name=mRNA_Ecto-sp13_S_contig9163.20735.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9163:3559..6408+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCACGCAGGATGAGAAAATCAAGTGGGTGGAGGGAAGCCCGTTCAT
GGTCGATGGCTTCCGTTTCACGAACCCGCGATGCAGACACTATTTACTGA
CGCATTTTCACTCAGACCACACGACAGGGTTGTATAAATCATTCTCCGCG
GGTAAAATTTATTGCTCTCACGGCACTGCAAACCTGATCGTCGAACTAAT
GGGGGTAAACCGGGAGCGCGTGGTGGCCCTCCCGATGGACACGCCGGTGC
TTGTGGCTGGATTCGAGCTGACCTTAATCGACGCCAACCATTGCCCCGCG
GCAGTCATGTTCGTCATTCGCGATCCTCGTCCAGGGGGGCGCACTACATT
ACACACCGGTGATTTCCGAGCGGCCGAGAGCGTCTGCAGGAACCCCGTGG
TCATGTCCTTGAAAGGAAGACTAGACTCGCTCTACCTCGACACTACCTAT
TGCGGGCCGCGTCATACTTTTCCGGATCAGTCCGAGGTGCTGGAACAGGC
CACGCAGCTCGTGCGGATGGAGCTTCAGCGGGACCCAAACACCCTCTTCC
TAGTGGGGACCTATTCCATTGGAAAGGAGAAAGTTCTCGAGGCGGTGGCC
AAGGCAACTGGCAGTCGGTACGATCTGGACACGAATTCTCCCGTGACGCT
GCGGGAAGTCTTGGCCAAGGCGAGGGCGGACGGCGCCCCTTTCACCAGCG
TGGTGGGTGTGAGGCCGACGGGGTGGACGCACACCAACGTGCGCAAGGGG
GGAGAGGGCGGAGGCAAGGCCGGGGGTATCCAGTCTTCGATTGGAGGGCG
GGCCGCGTCTGCCGCTGCTGGCGGTCAGGCGGTAAGATCCGGAGATGAGG
GACGCGGAGAAGCAGGAAAAGAGGGCTCCGGAATCACTTCCAGCAGCAAA
CCACAGGATGGTGTTGGCGATGACATCAGCGGGGAGCCTGAGCTCCTATC
TGGGTGGGAAGAGCAGGACGATGAGGCGGCGGCGTGGGGAGCTGGATTAG
AGGAGGATGAGAACGAGGAGACCGTGCAGGTGGCGACGAACGGCGTGGGT
GTCCTGCCGCCTCCGTCGAGCTCGTCTTCGTCGTCATCCGCTGTTGCTGG
TCCAGCGGTAGGACCGTGGACCGGAAAAAAGCCGTGGGTGGATGGCGTCG
CGAGAGTTTACTCGCTCCCGTACTCGGAGCACAGCTCCTTCACCCAGCTG
AAGGATTTTGTGCGAACCGTTAGGCCAAAGTGA
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