mRNA_Ecto-sp13_S_contig91434.20714.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig91434.20714.1
Unique NamemRNA_Ecto-sp13_S_contig91434.20714.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: D8LHX2_ECTSI (Serine/threonine protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX2_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 3.350e-21
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1
Query:   28 DEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDME 156
            DEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDME
Sbjct:  418 DEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDME 460          
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: A0A218VU68_PUNGR (probable protein phosphatase 2C 72 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218VU68_PUNGR)

HSP 1 Score: 59.7 bits (143), Expect = 6.690e-9
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    1 SSHRTGPLADEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDMEVRGWKKSFLSS 189
            S HR  P  D+FVV+A DGVWDVMGNDE    +R +++ GN    + + D  V  WK+ F SS
Sbjct:  270 SYHRISP-EDQFVVLATDGVWDVMGNDEVMAVVRSAMEVGN-PTAKAVVDAAVSAWKRKFPSS 330          
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: A0A8C3YWY3_9TELE (Protein phosphatase 1A-like n=6 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3YWY3_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 9.510e-9
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 SSHRTGPLADEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDM 153
            S+ R  P  DEFVV+ACDG+WDVM NDE C F+R  +Q  + DL R+  D+
Sbjct:  233 SAIRRCPAGDEFVVLACDGIWDVMSNDELCDFVRSRLQV-HGDLERVCSDV 282          
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: A0A8C3YWP8_9TELE (Protein phosphatase 1A-like n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3YWP8_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 9.580e-9
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 SSHRTGPLADEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDM 153
            S+ R  P  DEFVV+ACDG+WDVM NDE C F+R  +Q  + DL R+  D+
Sbjct:  256 SAIRRCPAGDEFVVLACDGIWDVMSNDELCDFVRSRLQV-HGDLERVCSDV 305          
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: A0A024UAN9_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UAN9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.260e-8
Identity = 23/43 (53.49%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   25 ADEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDM 153
            A+EF+++ACDGVWDV+ N+EAC F+R  ++ G RD+G I E++
Sbjct:  227 ANEFLLLACDGVWDVLSNEEACDFVRSVMKLGERDMGLICEEL 269          
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: A0A1V9ZVL1_9STRA (Phosphatase 2C n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVL1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.280e-8
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 SSHRTGPLADEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDM 153
            + HR+    DEF+++ACDG+WDVM ND+AC F+R  + +G  ++G I E++
Sbjct:  219 TQHRS--KEDEFLILACDGIWDVMTNDDACDFVRSLMNKGESNMGLICEEL 267          
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: A0A8K1FKV9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKV9_PYTOL)

HSP 1 Score: 56.2 bits (134), Expect = 1.130e-7
Identity = 21/43 (48.84%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   25 ADEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDM 153
            ++EF+++ACDG+WDVM ND+AC  +R  ++ G  D+G I ED+
Sbjct:  234 SEEFLIIACDGIWDVMTNDDACNHVRMLMERGESDMGLIAEDV 276          
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: A0A067CWE3_SAPPC (PPM-type phosphatase domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CWE3_SAPPC)

HSP 1 Score: 55.8 bits (133), Expect = 1.530e-7
Identity = 21/42 (50.00%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   28 DEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDM 153
            +EF+++ACDG+WDVM N+EAC F+R  + +G  ++G I E+M
Sbjct:  226 NEFLILACDGIWDVMTNEEACDFVRSLMLKGENNMGLICEEM 267          
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: A0A0P1A555_PLAHL (Protein phosphatase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A555_PLAHL)

HSP 1 Score: 55.8 bits (133), Expect = 1.560e-7
Identity = 21/42 (50.00%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   28 DEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDM 153
            +EF+V+ACDG+WDVM NDE C ++R+ + +G  DL  I E++
Sbjct:  234 EEFLVLACDGIWDVMSNDEICAYIRQLMNDGEMDLKLIAEEI 275          
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Match: A0A484DUJ2_BRELC (PPM-type phosphatase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUJ2_BRELC)

HSP 1 Score: 55.8 bits (133), Expect = 1.560e-7
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   28 DEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILEDM 153
            +EF+V+ACDG+WDVM NDE C F+R+ +  G  DL  I E++
Sbjct:  234 EEFLVLACDGIWDVMTNDEICAFIRQLLSNGETDLRLIAEEV 275          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig91434.20714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX2_ECTSI3.350e-21100.00Serine/threonine protein phosphatase n=1 Tax=Ectoc... [more]
A0A218VU68_PUNGR6.690e-947.62probable protein phosphatase 2C 72 n=1 Tax=Punica ... [more]
A0A8C3YWY3_9TELE9.510e-952.94Protein phosphatase 1A-like n=6 Tax=Denticeps clup... [more]
A0A8C3YWP8_9TELE9.580e-952.94Protein phosphatase 1A-like n=1 Tax=Denticeps clup... [more]
A0A024UAN9_9STRA1.260e-853.49PPM-type phosphatase domain-containing protein n=2... [more]
A0A1V9ZVL1_9STRA2.280e-845.10Phosphatase 2C n=1 Tax=Thraustotheca clavata TaxID... [more]
A0A8K1FKV9_PYTOL1.130e-748.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067CWE3_SAPPC1.530e-750.00PPM-type phosphatase domain-containing protein n=2... [more]
A0A0P1A555_PLAHL1.560e-750.00Protein phosphatase n=1 Tax=Plasmopara halstedii T... [more]
A0A484DUJ2_BRELC1.560e-752.38PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig91434contigEcto-sp13_S_contig91434:8..196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score94.0
Seed ortholog evalue2.7e-17
Seed eggNOG ortholog2880.D8LHX2
Model size189
KEGG koko:K01090,ko:K04457,ko:K14803,ko:K17499,ko:K19705
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
Cds size189
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464186.3100522-CDS-Ecto-sp13_S_contig91434:7..1961681464186.3100522-CDS-Ecto-sp13_S_contig91434:7..196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig91434 8..196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig91434.20714.1prot_Ecto-sp13_S_contig91434.20714.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig91434 8..196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig91434.20714.1

>prot_Ecto-sp13_S_contig91434.20714.1 ID=prot_Ecto-sp13_S_contig91434.20714.1|Name=mRNA_Ecto-sp13_S_contig91434.20714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
SSHRTGPLADEFVVMACDGVWDVMGNDEACFFLRKSIQEGNRDLGRILED
MEVRGWKKSFLSS
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mRNA from alignment at Ecto-sp13_S_contig91434:8..196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig91434.20714.1 ID=mRNA_Ecto-sp13_S_contig91434.20714.1|Name=mRNA_Ecto-sp13_S_contig91434.20714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91434:8..196- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCTCATCGGACTGGCCCACTTGCAGACGAGTTTGTTGTCATGGCATG CGACGGGGTGTGGGACGTGATGGGCAACGACGAAGCGTGTTTTTTCTTGC GAAAGTCTATTCAGGAAGGGAACAGGGACCTCGGAAGAATCCTCGAAGAC ATGGAGGTACGCGGGTGGAAAAAATCATTCCTCTCAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig91434:8..196-

>mRNA_Ecto-sp13_S_contig91434.20714.1 ID=mRNA_Ecto-sp13_S_contig91434.20714.1|Name=mRNA_Ecto-sp13_S_contig91434.20714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig91434:8..196- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCTCATCGGACTGGCCCACTTGCAGACGAGTTTGTTGTCATGGCATG
CGACGGGGTGTGGGACGTGATGGGCAACGACGAAGCGTGTTTTTTCTTGC
GAAAGTCTATTCAGGAAGGGAACAGGGACCTCGGAAGAATCCTCGAAGAC
ATGGAGGTACGCGGGTGGAAAAAATCATTCCTCTCAAGC
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