mRNA_Ecto-sp13_S_contig9142.20710.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9142.20710.1
Unique NamemRNA_Ecto-sp13_S_contig9142.20710.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: D7G956_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.220e-40
Identity = 69/79 (87.34%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:  199 VSATVVDIAESSMPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARLSRAVSAWMNEKRQVDQI 435
            +S TVV +AES+M VDLPSGFKC WYNLSHPVQ AVLLVMPALF GVNRMFGML+KAAYARLSRAVSAWMNEKRQVDQI
Sbjct:    1 MSVTVVGVAESNMLVDLPSGFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRAVSAWMNEKRQVDQI 79
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: D7FU60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.380e-32
Identity = 62/89 (69.66%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:  169 SADRLFLALVVSATVVDIAESSMPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARLSRAVSAWMNEKRQVDQI 435
            S  R FL LV+SA VV +AES + V+  SGFKC WY+L HPVQ AVLL+MPALFFG+NR+FG L+KAAYARLSRAV+AWM+EKRQV +I
Sbjct:  134 SHGRHFLVLVISAMVVGVAESKL-VEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQVHRI 221
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: A0A6H5KYN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 6.100e-32
Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:  121 AFEKLPRRFLKRVGVC---SADRLFLALVVSATVVDIAESSMPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARLSRAVSAWMNEKRQVDQI 435
            +F + P+   +  G     S DR FL LV SA VV +AES + V+  SGFKC WY+L HPVQ AVLL+MPALFFG+N +FG L+K AYARLSRAV+AWM+EKRQ+ +I
Sbjct:   24 SFRQTPKALKRGAGFQQSGSHDRHFLVLVTSAMVVGVAESKL-VEFRSGFKCIWYDLPHPVQFAVLLMMPALFFGINWIFGKLDKVAYARLSRAVTAWMDEKRQLHRI 130
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: A0A6H5JLZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.200e-24
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:  139 RRFLKRVGVCSADRLFLALVVSATVVDIAESSMPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARLSRAVSAWMNEKRQVDQ 432
            R   KR        L +A V+SAT V I ES+  V+ PS F+C W +L HP Q A++ +M AL FGV+R+FG L+ AAYARLSRAV+AW+NE+R   Q
Sbjct:    8 REARKRPPALRRSHLLVATVMSATTVKIVESNRLVEFPSVFRCMWNDLPHPAQFAIIFLMLALLFGVHRIFGKLDDAAYARLSRAVTAWINERRHAHQ 105
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: A0A6H5JTU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.900e-21
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:  178 RLFLALVVSATVVDIAESSMPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARLSRAVSAWMNEKRQ 423
            R+ L + + A  + +AE ++  DLPSG KCAWYNLSHP QCA L++     +GVNR+F  L+ A YARLSRA   WM ++R+
Sbjct:   94 RVILLVAIEAVKLGLAEGTLLCDLPSGLKCAWYNLSHPAQCAALIMTLGCIYGVNRLFDKLDSAMYARLSRATRNWMQQRRE 175
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: A0A6H5L9J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.310e-19
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:  160 GVCSADRLFLALVVSATVVDIAESSMPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARLSRAVSAWMNEKRQVDQI 435
            G+    R  L   ++A    + + S+ VDLPSGFKCAWYNL HP Q A+L +M  + + +NR+F  ++K  YARLS A  AWM+E R   Q+
Sbjct:  118 GLTMMSRRILLATIAALNAGLVDGSLLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARLSCATEAWMDEIRHSRQV 209
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: D7G968_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G968_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.730e-18
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:  151 KRVGVCSADRLFLALVVSATVVDIAESSMPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARLSRAV 396
            +R G+     L +A  +SA +V I ES+  V+ PSG  C W +L HP Q AV+ +M AL FGV+++FG L+ AAYARLSRAV
Sbjct:   13 RRPGLRRRSHLLVATAMSAMIVGIVESNRLVEFPSGVMCTWNDLPHPAQFAVIFLMLALLFGVHQIFGKLDSAAYARLSRAV 94
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: D7G954_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G954_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.100e-17
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:  151 KRVGVCSADRLFLALVVSATVVDIAESSMPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARLSRAVSAWMNEKRQVDQI 435
            +  G     R  L   ++A    + + S+ VDLPSG KCAWYNL HP Q A+L +M  L + +N +F   +K  YARLS A  AWM+E R   Q+
Sbjct:  115 RTAGSTMMSRRMLLATIAALNAGLVDGSLLVDLPSGLKCAWYNLEHPAQFAILFLMVGLVYFINWLFNEADKVVYARLSCATEAWMDEIRHTRQV 209
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: A0A6H5L1U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.780e-17
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:  166 CSADRLFLALVVSATVVDIAESSMPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARLSRAVSAWMNEKR 420
            C   R  L   ++A      E ++ VD+PSG KCAWYNL+HP Q A+LL+M  L   VNR+F   +K  Y RLSRA  AWM+E R
Sbjct:  135 CFPCRRTLLATMAAINAGCVEGNVVVDMPSGLKCAWYNLTHPAQFAILLLMVGLVSFVNRLFNEADKVMYTRLSRATDAWMDEMR 219
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BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Match: A0A6H5KTP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.620e-16
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:  316 MPALFFGVNRMFGMLEKAAYARLSRAVSAWMNEKRQVDQI 435
            MPALFFG+NRMFGML+KAAYARLSRAVSAWMNEKRQVDQI
Sbjct:   32 MPALFFGMNRMFGMLDKAAYARLSRAVSAWMNEKRQVDQI 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9142.20710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G956_ECTSI1.220e-4087.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FU60_ECTSI3.380e-3269.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYN8_9PHAE6.100e-3258.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLZ1_9PHAE2.200e-2451.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTU8_9PHAE3.900e-2150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9J2_9PHAE5.310e-1944.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G968_ECTSI5.730e-1850.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G954_ECTSI3.100e-1742.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1U9_9PHAE5.780e-1748.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTP9_9PHAE1.620e-1695.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9142contigEcto-sp13_S_contig9142:3890..6479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size490
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_003050.1
Cds size204
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9142.20710.1prot_Ecto-sp13_S_contig9142.20710.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9142 4646..6427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464186.0336668-UTR-Ecto-sp13_S_contig9142:3889..40521681464186.0336668-UTR-Ecto-sp13_S_contig9142:3889..4052Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9142 3890..4052 +
1681464186.0459921-UTR-Ecto-sp13_S_contig9142:4259..42721681464186.0459921-UTR-Ecto-sp13_S_contig9142:4259..4272Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9142 4260..4272 +
1681464186.0561428-UTR-Ecto-sp13_S_contig9142:4587..46451681464186.0561428-UTR-Ecto-sp13_S_contig9142:4587..4645Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9142 4588..4645 +
1681464186.1008737-UTR-Ecto-sp13_S_contig9142:6427..64791681464186.1008737-UTR-Ecto-sp13_S_contig9142:6427..6479Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9142 6428..6479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464186.066699-CDS-Ecto-sp13_S_contig9142:4645..46461681464186.066699-CDS-Ecto-sp13_S_contig9142:4645..4646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9142 4646..4646 +
1681464186.0763483-CDS-Ecto-sp13_S_contig9142:6009..60891681464186.0763483-CDS-Ecto-sp13_S_contig9142:6009..6089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9142 6010..6089 +
1681464186.091862-CDS-Ecto-sp13_S_contig9142:6304..64271681464186.091862-CDS-Ecto-sp13_S_contig9142:6304..6427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9142 6305..6427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9142.20710.1

>prot_Ecto-sp13_S_contig9142.20710.1 ID=prot_Ecto-sp13_S_contig9142.20710.1|Name=mRNA_Ecto-sp13_S_contig9142.20710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MPVDLPSGFKCAWYNLSHPVQCAVLLVMPALFFGVNRMFGMLEKAAYARL
SRAVSAWMNEKRQVDQI*
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mRNA from alignment at Ecto-sp13_S_contig9142:3890..6479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9142.20710.1 ID=mRNA_Ecto-sp13_S_contig9142.20710.1|Name=mRNA_Ecto-sp13_S_contig9142.20710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9142:3890..6479+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTGCGTTGAAAGCAGTCGAACACCACCGTCGAGCGGAGTGACGTCATT
TTGGGCACGTCCATCGACTATTAATCTCGCTGGGCGTTGCTTCTCCATCG
ACATCCGTCCGAGGCTCTAAGCATTCGAAAAGCTACCAAGAAGGTTCCTG
AAGAGAGTTGGCGGTTGACAACAAAGGTACACACACGCTCAAGAGCTTTA
GATGTGAAACCAACGCGATGCATCCGTTTGCACCTGGGAATGCGTCCAGG
AGCATTTTGTACTCCCTTGGATTCCGTAATAAAAAGTGAGAGCGCACGAT
GAAACAGGTTGTACCAGGGAATGCGTCCCGAGCTTTTCGTAACTTCTTGA
ACTCCATAGTAAAATGAGAGTTTGTAGTGCGGAGTGCGGTTTGCTCCACA
TGAAAAATAGTTGCCTAGAGCAACTTCGGCACGTATTCCATCGCACCGCG
GAGCATATGTGCTACGCAGCAAATGTATAGGGGGCTTTTGACGAGCTTGT
TTTGATTTTCCAGCCAAAATCCTCCGCCTGCCTGCACAATGCGTTTCACT
TATCTCGAGGGAGGTAGCCGTGTCCTAGAGACACCGTTTTTTCCCCTCAC
CTGGCGAGCGTGATTTCCGAGTTGATGTCTTGTTTGTCTCGTAGTTGACG
TGAGCCCTCTCTGTACCCGCTCGTCTGAACCACCAGTGGACCCCACAGCC
GTCTCTTCCTGGCGTTGGTGGTGTCAGCCACAGTCGTGGACATCGCGGAA
AGCAGCAGTGAGTGGTGGCGCACCCGTGCTTGTTGTGTGGAGCGATGAGC
GTTTGTCTGTGTCTACATGCGCGCCATTGCACGGTCATTGATGGACAAGA
GACCTCGGTTGTTGTGTTCCGTCATTACAGTAGTGTGTCTTCTGGACGTC
GGTTTATTCAAAGTGTGTTCAGGACGCGTGCGCCGGGGTGCTGAAGTGGA
AAGCCATCTACAGATCACAGACAGTAGGGTTTCGTGTGTCTGGGCTTATT
TGTTATTTGCGTCGATGGCGCCTACCGGCTAGGAAAATATCTGTGGGTAC
CATCTTTATTGAATATTAGCGTCGACCGCGCTGACCGACTAACCGGTGCA
ATGGCGTCAGTCCCAGTGCGGCTGAAAACAGAGAGTGCTTCAAGAAGCCA
TGATGCGGGATCCCGTGAGGGGGCGTCATAGGAGAGGCTAGGCTGTTTTC
TGGACAAGAGACAGACACGGTAGCAGTTGAGAAAAAAGGTCCGTTCTACC
AAGGCCCCTACTTTCTCAATCTCTCACACTTCTGCCAGTTTTGCTAATCC
GCCCATGGGGCACCCATGAGCAGCCCATGAGCTGCCCAAGAAGTGCCCAC
CGTGGGCACTTTAACCTAGAACTCGCCACCATCATCTCAACCTAGAACTT
AGCCACTGGCACATAACCTAGAATTTATCCAGCGCCAACCTAGCACGTAC
CGTGTGGGCTTGGGTTGACGTAAGGGTTTAGCCGGTAGTGTTTTCCTTCC
AAAGCAGATATTCTGTTGTTAGGACTACCCTGATTCCGGTTGAAGGGAAC
TTATTGACGATCCATAGGCTGCCAAAACCATGGGCAGCCCATGAACTGCC
CACGAAGTGCCCATCATGGGCTGCCCATGGGTTTTTCCCATGGCCTGTCC
GTGGGCTGTCTATGTGCAGCTCCGTGGGTACACGTGGTGCCCATGGGCGG
TTTCGTGTGGTAGACCCTACTTTATCCTCGTGTTTGTTTCGGCCCCTTTC
TCACGGTATTGTCGCTTCGATCGTTCTTATTGCATTCACCACTATCTTGG
CTCTTACCTCTACCGCTCCTGTTGGGCTATCCCGTATTTCGCCGGCGCTT
GTTGTGTGGAAGGCTCACCTGGGTGGGAACATTTTCTCTCTTCCGTGCCT
CCTGTTCCCTCGCGTCGATCATGGTGTTCGCATCGACCGCGCAAACCGGC
TGACCAATTAAAAATACGTCCAGTCTCAGCGCGGCTAAATGCCGCAAAAC
GTTTCTCAAGGCCATGACCTGGTGTGCATGTGTGTGTGTCGCTTTCTTCG
AGTACCGCCAGTCATGCATGACTTAACTATACCTTCACTCGCGACTTTGC
CTTTGTTCCGTCCCGTGCAGTGCCGGTTGACTTGCCTTCGGGGTTCAAGT
GCGCGTGGTACAACCTATCGCACCCCGTCCAGTGTGCGGTATTGCTAGTG
GTAAGTGCCCTCTCCTGGGCATGTATACCCATGCTTCAAGGTGGATTGTC
GGCGTCTGGACACGCTTGCCACTCCCGCTGTGCGCGTTCTTCGATGCACA
AAGCCTGGCAGCAGGACTACCGATGGCCGTAGAACAGGCTCGAAAGTTGC
TTGTGGCATCCTCCGGGCTCCTGATAGATTCCGGCGCGCCCAATGCTGAT
CCGAATCCCGCGCAGATGCCTGCGCTCTTCTTCGGGGTGAACCGGATGTT
CGGCATGCTCGAAAAAGCCGCCTACGCTCGGCTTTCTCGGGCCGTGTCAG
CTTGGATGAACGAGAAGAGGCAGGTGGATCAGATTTAGTCCTCCGAAACC
AAGACAATCAAAGCAGAAGAAAGACTTGCATGCCCTGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9142:3890..6479+

>mRNA_Ecto-sp13_S_contig9142.20710.1 ID=mRNA_Ecto-sp13_S_contig9142.20710.1|Name=mRNA_Ecto-sp13_S_contig9142.20710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9142:3890..6479+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGTTGACTTGCCTTCGGGGTTCAAGTGCGCGTGGTACAACCTATC
GCACCCCGTCCAGTGTGCGGTATTGCTAGTGATGCCTGCGCTCTTCTTCG
GGGTGAACCGGATGTTCGGCATGCTCGAAAAAGCCGCCTACGCTCGGCTT
TCTCGGGCCGTGTCAGCTTGGATGAACGAGAAGAGGCAGGTGGATCAGAT
TTAG
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