mRNA_Ecto-sp13_S_contig912.20683.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig912.20683.1
Unique NamemRNA_Ecto-sp13_S_contig912.20683.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig912.20683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig912contigEcto-sp13_S_contig912:16675..17576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size275
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_002310.2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464183.6426046-CDS-Ecto-sp13_S_contig912:16675..167271681464183.6426046-CDS-Ecto-sp13_S_contig912:16675..16727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig912 16676..16727 -
1681464183.6531672-CDS-Ecto-sp13_S_contig912:17355..175761681464183.6531672-CDS-Ecto-sp13_S_contig912:17355..17576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig912 17356..17576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig912.20683.1prot_Ecto-sp13_S_contig912.20683.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig912 16676..17576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig912.20683.1

>prot_Ecto-sp13_S_contig912.20683.1 ID=prot_Ecto-sp13_S_contig912.20683.1|Name=mRNA_Ecto-sp13_S_contig912.20683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
FLFSSSRARSLPPGAGRGHRQQSRPSTSTPCPPASSVGIRRGTAASRGCR
DSGGGAGKLAEGVAGDPDGASGYRAFVERSYYKGNGAAQLL
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mRNA from alignment at Ecto-sp13_S_contig912:16675..17576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig912.20683.1 ID=mRNA_Ecto-sp13_S_contig912.20683.1|Name=mRNA_Ecto-sp13_S_contig912.20683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=902bp|location=Sequence derived from alignment at Ecto-sp13_S_contig912:16675..17576- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCTTTTCTCCAGCTCTCGGGCTCGAAGCTTACCTCCAGGAGCCGGGCG
GGGGCACCGCCAACAGTCACGGCCCTCGACGTCGACCCCTTGTCCGCCGG
CGTCGTCGGTTGGAATCAGAAGAGGAACGGCCGCATCGAGAGGCTGTCGG
GATAGCGGTGGTGGTGCTGGAAAGTTGGCGGAAGGCGTGGCTGGGGACCC
AGACGGAGCTTCAGGGTATAGGTGCGCTTGAAGTGCGATTGACTTCATTC
ATGCCCGAACAGATTCAAAGGTCACACGGCTCACCACATTTTCCACCCGC
TCTTGCACGAGGAACGATGGCCATGTTGTGTGTCTTTCCATTGACAAAAC
ATACATACAAAGAAATGATCAATTGTACGGAAAACATATCTTCAGTAACT
CGTTCGTCTAGCATTTGTTGTCCACAACAATGGTGGGTTCGATTTTAAGA
CCTGCGTTGACTACTGTAGTCAATGACACCAAGGTTGACAAGGCCCCGAC
AACACGCACCGACATCCGAAATCGCTGGGAAAGATTGTCTGCTATTATCG
AAGAGACGAAATCGACGGGGTATCCCGACACGCCTGCGGGCGTTCGAAGA
CCACACATTCTACAAAGGGGGACGCGAACGGGTAGCGTCTGATATATATA
TAAAGAGAGTCCAGAAGGCATTCGTGATCAACAAGCACGCACCCGCCGCC
GGCGGCCCCGATATTCACCATGAACGGCGCTGGTGTAGAATTCTGCTTCA
AACCTTCAGAGTCCATAGGCACCCTTACTCGCCAACGAGGGCTAGAACCT
CTCGTCGAGCTGCGCACCGGCGATGTTGCCTGCGGGATAAAATGGTCAGG
GCGTTTGTGGAGAGGAGCTATTACAAGGGCAACGGAGCGGCGCAGCTCCT
GA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig912:16675..17576-

>mRNA_Ecto-sp13_S_contig912.20683.1 ID=mRNA_Ecto-sp13_S_contig912.20683.1|Name=mRNA_Ecto-sp13_S_contig912.20683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig912:16675..17576- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCTTTTCTCCAGCTCTCGGGCTCGAAGCTTACCTCCAGGAGCCGGGCG
GGGGCACCGCCAACAGTCACGGCCCTCGACGTCGACCCCTTGTCCGCCGG
CGTCGTCGGTTGGAATCAGAAGAGGAACGGCCGCATCGAGAGGCTGTCGG
GATAGCGGTGGTGGTGCTGGAAAGTTGGCGGAAGGCGTGGCTGGGGACCC
AGACGGAGCTTCAGGGTATAGGGCGTTTGTGGAGAGGAGCTATTACAAGG
GCAACGGAGCGGCGCAGCTCCTG
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