mRNA_Ecto-sp13_S_contig912.20680.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig912.20680.1
Unique NamemRNA_Ecto-sp13_S_contig912.20680.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig912.20680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig912contigEcto-sp13_S_contig912:6513..6928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464183.5239828-UTR-Ecto-sp13_S_contig912:6512..65401681464183.5239828-UTR-Ecto-sp13_S_contig912:6512..6540Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig912 6513..6540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464183.5339637-CDS-Ecto-sp13_S_contig912:6540..67241681464183.5339637-CDS-Ecto-sp13_S_contig912:6540..6724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig912 6541..6724 +
1681464183.5435874-CDS-Ecto-sp13_S_contig912:6875..69281681464183.5435874-CDS-Ecto-sp13_S_contig912:6875..6928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig912 6876..6928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig912.20680.1prot_Ecto-sp13_S_contig912.20680.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig912 6541..6928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig912.20680.1

>prot_Ecto-sp13_S_contig912.20680.1 ID=prot_Ecto-sp13_S_contig912.20680.1|Name=mRNA_Ecto-sp13_S_contig912.20680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MRGTNQRPRLEATAAMIHCSLRRLHIADTRAPGSWPWPRQNLEESPTKDA
PVTRKQQGLSQGQQEINLFGTLLEAVAYR
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mRNA from alignment at Ecto-sp13_S_contig912:6513..6928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig912.20680.1 ID=mRNA_Ecto-sp13_S_contig912.20680.1|Name=mRNA_Ecto-sp13_S_contig912.20680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=416bp|location=Sequence derived from alignment at Ecto-sp13_S_contig912:6513..6928+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTTACCTGATAGTGCTTCACAGGAGAATGCGAGGCACGAACCAACGAC
CGAGGCTAGAAGCTACGGCGGCCATGATACACTGTAGTTTACGACGTCTT
CATATCGCCGACACGAGGGCCCCTGGCTCTTGGCCATGGCCTAGACAAAA
TTTAGAGGAAAGCCCAACGAAGGATGCACCAGTCACACGAAAGCAACAAG
GGCTATCCCAAGGTGAATCATTGTAAATATGTATGAAACCTTACCTTGTT
CTTTGCAGCTGTTCTCTCGTTCTTGTCAATCATTGAGAGCGTGCGTGAGT
GTCCCTATTCTACTGCTGTAGAGGCACTCACCCCACATCCGTCCATCCAT
GTTGTCACAACAGGTCAACAGGAGATCAACTTGTTTGGAACATTGCTGGA
GGCAGTGGCGTACAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig912:6513..6928+

>mRNA_Ecto-sp13_S_contig912.20680.1 ID=mRNA_Ecto-sp13_S_contig912.20680.1|Name=mRNA_Ecto-sp13_S_contig912.20680.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig912:6513..6928+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGGCACGAACCAACGACCGAGGCTAGAAGCTACGGCGGCCATGAT
ACACTGTAGTTTACGACGTCTTCATATCGCCGACACGAGGGCCCCTGGCT
CTTGGCCATGGCCTAGACAAAATTTAGAGGAAAGCCCAACGAAGGATGCA
CCAGTCACACGAAAGCAACAAGGGCTATCCCAAGGTCAACAGGAGATCAA
CTTGTTTGGAACATTGCTGGAGGCAGTGGCGTACAGG
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