mRNA_Ecto-sp13_S_contig912.20679.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig912.20679.1
Unique NamemRNA_Ecto-sp13_S_contig912.20679.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig912.20679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig912contigEcto-sp13_S_contig912:3539..6043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1308
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_002330.1
Cds size1308
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464183.7010236-CDS-Ecto-sp13_S_contig912:3538..36701681464183.7010236-CDS-Ecto-sp13_S_contig912:3538..3670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig912 3539..3670 -
1681464183.7134206-CDS-Ecto-sp13_S_contig912:4867..60431681464183.7134206-CDS-Ecto-sp13_S_contig912:4867..6043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig912 4868..6043 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig912.20679.1prot_Ecto-sp13_S_contig912.20679.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig912 3539..6043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig912.20679.1

>prot_Ecto-sp13_S_contig912.20679.1 ID=prot_Ecto-sp13_S_contig912.20679.1|Name=mRNA_Ecto-sp13_S_contig912.20679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=436bp
MVSYTEAEPRFSRWLQKYRDDRAAHSRARKMHSDPAMLDADLARVVSRMG
IPNGHRKPAELREATEMLLNGARASTEHFRNHETFFNLGDVVDLLESLLG
EGTRHARPVVAAFLEALTASGSATVLTNRRYVGNGGLELPYFLLQSVVIG
EPWGYNYNNSSGMPNLGSSQDRAFREICFRMLARMAFLSAECTLSRGGNH
PFMVLLEGNRGPMLPFIEVRMNRIVDFPVNQSAVLDVLCLMIFVYRALPW
SRRQHLADIEHASSVRTPPVDYIAKVLVKKTMQMMIMVPGFLRELVVDQQ
LWHVLFAYGAGSIAASRYHLQHQSRDSLGFSSSETRNTARRLCNAFFRNR
QHEERLIRILKETCLVSTWICGEGQRPLLLEMCRQRRRRVVEAVAAGAPL
AFSTAVSELLAFVRGPGVRGKKQRLAAWLASKTEG*
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mRNA from alignment at Ecto-sp13_S_contig912:3539..6043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig912.20679.1 ID=mRNA_Ecto-sp13_S_contig912.20679.1|Name=mRNA_Ecto-sp13_S_contig912.20679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig912:3539..6043- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCTTACACTGAGGCGGAGCCACGCTTCAGTCGGTGGCTTCAGAA
GTACCGCGACGATCGAGCGGCACACAGCAGGGCTCGAAAGATGCACTCTG
ATCCAGCAATGCTCGATGCTGATCTCGCCCGTGTGGTGTCTCGAATGGGC
ATACCAAACGGCCATAGGAAGCCTGCCGAGCTCCGCGAAGCGACAGAAAT
GCTGTTGAATGGGGCACGTGCGAGCACGGAGCATTTCCGGAACCACGAGA
CATTCTTCAACTTGGGGGACGTTGTTGATTTATTAGAGTCTCTCTTGGGA
GAGGGCACTCGCCATGCACGCCCAGTGGTTGCGGCATTCTTGGAAGCACT
CACGGCCAGCGGGTCGGCTACGGTATTGACCAACAGGCGCTACGTCGGAA
ACGGAGGACTAGAACTACCGTACTTCTTACTGCAGTCGGTGGTGATTGGA
GAACCATGGGGGTACAACTATAACAATTCATCGGGAATGCCCAATCTTGG
ATCCTCGCAAGACCGCGCCTTTCGCGAAATTTGTTTCCGAATGTTGGCGC
GTATGGCGTTCCTCAGCGCTGAGTGCACCCTATCGCGCGGGGGCAACCAT
CCGTTCATGGTGCTGCTCGAAGGGAACCGTGGGCCAATGCTCCCGTTCAT
TGAAGTCCGGATGAACCGCATTGTTGATTTTCCGGTGAACCAATCTGCGG
TCCTCGACGTGCTCTGTCTGATGATCTTCGTGTATCGAGCACTTCCGTGG
TCCCGACGGCAGCATCTTGCCGACATAGAGCATGCAAGCAGTGTAAGAAC
GCCGCCGGTGGATTACATCGCGAAGGTTCTTGTGAAAAAGACGATGCAGA
TGATGATCATGGTGCCGGGCTTCTTGCGAGAGCTCGTCGTCGACCAACAG
CTATGGCATGTACTTTTTGCGTACGGCGCTGGAAGCATTGCGGCTTCCCG
GTACCACCTGCAGCACCAAAGCCGAGACAGTCTTGGTTTCAGCTCCAGTG
AGACAAGGAACACCGCCCGCCGTCTGTGCAACGCTTTCTTTCGGAATCGG
CAGCATGAGGAAAGATTGATACGGATCCTGAAGGAGACTTGCCTCGTGTC
GACGTGGATTTGCGGCGAGGGTCAGCGCCCCTTGTTGCTAGAGATGTGCC
GACAACGCCGCCGGCGAGTGGTGGAGGTGAGGAACAACCCGTGCAGCGAC
GGCCATTAGCTACGCGCGAAGCTACACGGTCGAGTAGCCTCCCAGAATTG
TTCGAATTTTTCGCGGTCGATGAACCCGTTCTCGGAACAAGCACTCCCAA
CACGTTTCTATCTGTGCAACGATTTTCCGCATGTTGATTGGTACTGTAGC
GTGATGCGGAGTCATGCGGTTGCGTAGCCATTGTTGTCGGGGGTTTTGAC
TAGCCCTATCCGTTGGGCGCGTCCGTCCGATTGGTCCTTACGGTAGACTA
TCGCGGTGCATCGTGTAGACGACCTATCGGAGTACGGGCGTATTTTCAGG
CTACACCAAGGGTATGCGCCAACGAAGAATTCGGGCACATGGCCCATTCC
CCCCCTCGAGGAGGAAGTTTCGAAACGTTCCCACGAACCACCGAAAACGT
ACGACCCATTCGGTGAGCATTGGTGGATTTCGGGCGTTCTTTTTCGACAA
TAACGCAGCACGCAATATTGAATTACGTCACCCCACCAAGAGCTTGTATG
AAGACACACGCACGCACCATTACGAGTGCATATCCAAGCGCGTACCAATC
TGCAGACAAATGTTACCGGGTGAGTAAGTGCAGAAAACGCTCGCGAATAC
CATAAGGTGTGTTTGTCATTGGCCCTGTGCAACACGCGTTTGAAACGTCT
AGGGTGACAGGCAGGTTCGGGAAGTGTTTTGGGTACTTGTTTCCCCAGGC
ACGTAGTCCATATATTAAGTGAGCTACTTTGGCTTACAGGAGACTCTCCA
TCCACGGCCAGGCAATCCGAAAGTGTTTTCGCGTAAGAGAACCGAAGCAA
GGAGAGGCCATTTGTCCCTGGCCACCCTCGGCCAGACAGGGGACGGACGG
GCTAGAGGCTGCTGCGAAGCCAACTTTGGGGGTCGCGGGGGGTCAGCCAC
CTCTCAGTGGCCCCAAGGCCCAAAGAAAACGTTGAAACAGAGGTAAAGAG
AGCTCCGAAGCTCAGCGAGAACCTCTCCGCCTACAACCCGGGGACACGCT
AGGTGCCTTCCTCCGCTTCCCAAATCATCGCGCGCCCCCTTCGACGGCCC
AGATTCGATGTGTGCACCTATTTTGTCTTGGGATGTTTTCCGCGTATACC
CTAGGCTACACGTAGTGTGTTTGAGTTGCACGCTTTCTAACATTGGCCCT
CGTTGCTGATAAACGGGATTCAGGCGGTGGCTGCGGGCGCGCCTTTGGCG
TTTTCTACCGCGGTGTCTGAATTGCTGGCCTTCGTTCGCGGGCCTGGTGT
TCGAGGAAAGAAACAGCGGCTTGCCGCATGGTTGGCGTCGAAGACTGAAG
GCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig912:3539..6043-

>mRNA_Ecto-sp13_S_contig912.20679.1 ID=mRNA_Ecto-sp13_S_contig912.20679.1|Name=mRNA_Ecto-sp13_S_contig912.20679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig912:3539..6043- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCTTACACTGAGGCGGAGCCACGCTTCAGTCGGTGGCTTCAGAA
GTACCGCGACGATCGAGCGGCACACAGCAGGGCTCGAAAGATGCACTCTG
ATCCAGCAATGCTCGATGCTGATCTCGCCCGTGTGGTGTCTCGAATGGGC
ATACCAAACGGCCATAGGAAGCCTGCCGAGCTCCGCGAAGCGACAGAAAT
GCTGTTGAATGGGGCACGTGCGAGCACGGAGCATTTCCGGAACCACGAGA
CATTCTTCAACTTGGGGGACGTTGTTGATTTATTAGAGTCTCTCTTGGGA
GAGGGCACTCGCCATGCACGCCCAGTGGTTGCGGCATTCTTGGAAGCACT
CACGGCCAGCGGGTCGGCTACGGTATTGACCAACAGGCGCTACGTCGGAA
ACGGAGGACTAGAACTACCGTACTTCTTACTGCAGTCGGTGGTGATTGGA
GAACCATGGGGGTACAACTATAACAATTCATCGGGAATGCCCAATCTTGG
ATCCTCGCAAGACCGCGCCTTTCGCGAAATTTGTTTCCGAATGTTGGCGC
GTATGGCGTTCCTCAGCGCTGAGTGCACCCTATCGCGCGGGGGCAACCAT
CCGTTCATGGTGCTGCTCGAAGGGAACCGTGGGCCAATGCTCCCGTTCAT
TGAAGTCCGGATGAACCGCATTGTTGATTTTCCGGTGAACCAATCTGCGG
TCCTCGACGTGCTCTGTCTGATGATCTTCGTGTATCGAGCACTTCCGTGG
TCCCGACGGCAGCATCTTGCCGACATAGAGCATGCAAGCAGTGTAAGAAC
GCCGCCGGTGGATTACATCGCGAAGGTTCTTGTGAAAAAGACGATGCAGA
TGATGATCATGGTGCCGGGCTTCTTGCGAGAGCTCGTCGTCGACCAACAG
CTATGGCATGTACTTTTTGCGTACGGCGCTGGAAGCATTGCGGCTTCCCG
GTACCACCTGCAGCACCAAAGCCGAGACAGTCTTGGTTTCAGCTCCAGTG
AGACAAGGAACACCGCCCGCCGTCTGTGCAACGCTTTCTTTCGGAATCGG
CAGCATGAGGAAAGATTGATACGGATCCTGAAGGAGACTTGCCTCGTGTC
GACGTGGATTTGCGGCGAGGGTCAGCGCCCCTTGTTGCTAGAGATGTGCC
GACAACGCCGCCGGCGAGTGGTGGAGGCGGTGGCTGCGGGCGCGCCTTTG
GCGTTTTCTACCGCGGTGTCTGAATTGCTGGCCTTCGTTCGCGGGCCTGG
TGTTCGAGGAAAGAAACAGCGGCTTGCCGCATGGTTGGCGTCGAAGACTG
AAGGCTAG
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