mRNA_Ecto-sp13_S_contig9118.20674.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9118.20674.1
Unique NamemRNA_Ecto-sp13_S_contig9118.20674.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9118.20674.1 vs. uniprot
Match: D7FWL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWL1_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.280e-59
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 1 
Query:    1 SEYKKLKAKMRKVQKLKRDLQNPGQAMKRKMQPDIYKKAKRTAHQXXXXXXXXXXXXXXXXXXXXXXRLKKLSKLKKMMKGEAHSKPKPRGMMPPEGHSGARHGAAPDGGYSSSDCSSVSSGSSLEGETLSDLXXXXXWDDGSGSS 438
            SEYKKLKAKMRKVQKLKRDLQNPGQAMKRKMQPDIYKKAKRTAHQXXXXXXXXXXXXXXXXXXXXXXRLKKLSKLKKMMKGE HSKPKPRGMMPPEGHSGARHGAAPD GYSSSDCSSVSSGSSLEGETLSD XXXXX +DGSGSS
Sbjct:    6 SEYKKLKAKMRKVQKLKRDLQNPGQAMKRKMQPDIYKKAKRTAHQXXXXXXXXXXXXXXXXXXXXXXRLKKLSKLKKMMKGEVHSKPKPRGMMPPEGHSGARHGAAPDDGYSSSDCSSVSSGSSLEGETLSDXXXXXXXEDGSGSS 151
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9118.20674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWL1_ECTSI1.280e-5996.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9118contigEcto-sp13_S_contig9118:4458..6491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1106
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_002320.1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464183.2875962-UTR-Ecto-sp13_S_contig9118:4457..44841681464183.2875962-UTR-Ecto-sp13_S_contig9118:4457..4484Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9118 4458..4484 +
1681464183.3308616-UTR-Ecto-sp13_S_contig9118:5826..64911681464183.3308616-UTR-Ecto-sp13_S_contig9118:5826..6491Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9118 5827..6491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464183.297937-CDS-Ecto-sp13_S_contig9118:4484..46101681464183.297937-CDS-Ecto-sp13_S_contig9118:4484..4610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9118 4485..4610 +
1681464183.3080194-CDS-Ecto-sp13_S_contig9118:4848..49411681464183.3080194-CDS-Ecto-sp13_S_contig9118:4848..4941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9118 4849..4941 +
1681464183.3198543-CDS-Ecto-sp13_S_contig9118:5631..58261681464183.3198543-CDS-Ecto-sp13_S_contig9118:5631..5826Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9118 5632..5826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9118.20674.1prot_Ecto-sp13_S_contig9118.20674.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9118 4485..5826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9118.20674.1

>prot_Ecto-sp13_S_contig9118.20674.1 ID=prot_Ecto-sp13_S_contig9118.20674.1|Name=mRNA_Ecto-sp13_S_contig9118.20674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
MRKVQKLKRDLQNPGQAMKRKMQPDIYKKAKRTAHQASNPGQTLKHKLQP
DAYKKAKRRLKKLSKLKKMMKGEAHSKPKPRGMMPPEGHSGARHGAAPDG
GYSSSDCSSVSSGSSLEGETLSDLSDLSDWDDGSGSS*
back to top

mRNA from alignment at Ecto-sp13_S_contig9118:4458..6491+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9118.20674.1 ID=mRNA_Ecto-sp13_S_contig9118.20674.1|Name=mRNA_Ecto-sp13_S_contig9118.20674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2034bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9118:4458..6491+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGAGTACAAGAAGCTCAAGGCGAAGATGAGGAAGGTGCAGAAGCTGAA
GCGAGACCTGCAGAACCCGGGGCAGGCCATGAAGCGCAAGATGCAGCCCG
ACATCTACAAGAAGGCGAAGCGCACCGCCCATCAGGCTTCGAATCCAGGA
CAGGTAACGTCGTCGTCGTCGTTGTTGTTCTTGTTCTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTCTTGTTCTTGTTCTTGTTCTTGTTGATATTTC
CCCATAGAAGTATTCTACAGTAGTGGTCCGTTGTTTGCTCGTCCATGCCA
CACCTCCTGTCACTCCCAATTTCCTGTTGCCATATGAAGTATCACCTACC
GCCCCCCGCTCCCTCGCATCCAAACGCTTGTTCTTTGCAAGACTTTGAAG
CACAAGCTGCAACCCGATGCGTACAAGAAGGCCAAGCGCAGGCTCAAGAA
GCTGTCCAAGCTCAAGAAGATGATGAAGGGCGAGGTGCGTGGTGGGTGGC
CGGCGCGGCTCGGCGCGCGTGAAGAACCCTTGAGCGTGTTTGTTCATGGT
GTACGCCCGTGTTCTGTACCATCATTCGTTCGCTTGATCGCTCCGCTCCA
TCCCATGCGGAATTTTATCCGTTCCGTCCCATGGTGACGATAAATGCCTC
AAAACACAGCGTTATTCTGCAACGTGAAAAATACAAAAGTAGTACGAAGC
TCACGGAAGACCTGGGGTGCGATGCGTACTCTACTTTTTGAATTTGCTGT
TTTGGATCCCAGGCAAAACTACATGCCGGTTTGTCGTGTTAGAGGGAGGG
AGAGAGAGACGGAGAAAGAGAGAGACAGAGAGACAGAGAGACAGAGAGAC
AGAGACAGAGACAGAGACAGAGACAGAGGGAGAGAGAGAGAGAGAGACAG
AGAGAGAGATAGAGAGAGAGAGACACAGAGACACAGAGACACAGAGACAC
AGAGACACAGAGACACAGAGACACAGAGACACAGAGACACAGAGACACAC
AGACAGACAGACAGACAGACAGAAAGAGAAGTATGGGGAGTCGTTTTTTT
CTCAAGCGTTGCTCGAGCCGAATTCCGGATCCCGAACGGGCGACACAGAT
TGCTGAACCTTACCCCCGTTCCTTCCCCACCATGGAAATTTCGTGTGTAA
CGAACGATGGCGGCCACGTTTCAGGCGCACTCCAAACCCAAGCCTCGCGG
GATGATGCCGCCTGAGGGGCACAGCGGGGCTCGCCACGGCGCGGCCCCCG
ATGGGGGTTACTCGAGCTCAGACTGCTCCAGCGTAAGCTCGGGATCCTCG
CTGGAGGGCGAGACCCTGTCCGATCTGTCCGACCTGTCTGATTGGGACGA
CGGTTCTGGTTCCAGCTGAACGATACGAGGAACTTATTTTTCGATGGATG
ATGTGTAATATATTTAGAATTGTTGTTCGGTGTGCGATTCGAAGAAGGGT
TCTCGTCTCCGCTGATGAGTTGGGTTAGTATTTTGCTGAAATATATGTGC
GTACTCTTTACTCCCGGCAGGGTTTGAGTGTGCCGAGAGTGGAAAGAAGG
CAACGAAGAAAGCTTCACAGCTTGCCTTTACATGGCACCACGTTGCCTTT
GCATGGCGGCATCACGCTGTTGTTCACGCTGTCTGTCGTCAATAGGTCTC
GAACGGGGCATGTTTTTTATTTATTTATTTATTTTTTGGCGTCGGTGTGG
GTCCCGTGGAGAAATCAATATTGACTGAAACAAGACAGCAAGAGCATGTT
AAGTGTTTAGTGAATTTGACAAAGAGGCCGACGACCCCATCTTCTGCAGC
GAAATGTCGGTATTAGTTCGGCAGAAATTACGCCGGCGGGCAGGGGATGT
GGTGATCATGGCAGTTAAGCCATCGCGACCAAGCGAGAAAATAGGGTTGG
AGGGGTGCGAGAGCAAGGAAGGGTGTTTCGAGGGCAGAGGGGATCCAAGG
TCCTGTCTGACCTCTGCAAATTGAGAATAATGTGTGTGCTCAGGCTACCG
GATTTTTGGCCTCCTGGATCTTTTTCTGTGTTCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9118:4458..6491+

>mRNA_Ecto-sp13_S_contig9118.20674.1 ID=mRNA_Ecto-sp13_S_contig9118.20674.1|Name=mRNA_Ecto-sp13_S_contig9118.20674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9118:4458..6491+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGAAGGTGCAGAAGCTGAAGCGAGACCTGCAGAACCCGGGGCAGGC
CATGAAGCGCAAGATGCAGCCCGACATCTACAAGAAGGCGAAGCGCACCG
CCCATCAGGCTTCGAATCCAGGACAGACTTTGAAGCACAAGCTGCAACCC
GATGCGTACAAGAAGGCCAAGCGCAGGCTCAAGAAGCTGTCCAAGCTCAA
GAAGATGATGAAGGGCGAGGCGCACTCCAAACCCAAGCCTCGCGGGATGA
TGCCGCCTGAGGGGCACAGCGGGGCTCGCCACGGCGCGGCCCCCGATGGG
GGTTACTCGAGCTCAGACTGCTCCAGCGTAAGCTCGGGATCCTCGCTGGA
GGGCGAGACCCTGTCCGATCTGTCCGACCTGTCTGATTGGGACGACGGTT
CTGGTTCCAGCTGA
back to top