mRNA_Ecto-sp13_S_contig910.20658.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig910.20658.1
Unique NamemRNA_Ecto-sp13_S_contig910.20658.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig910.20658.1 vs. uniprot
Match: A0A345MSH9_9VIRU (Triacylglycerol lipase n=1 Tax=CRESS virus sp. TaxID=2202563 RepID=A0A345MSH9_9VIRU)

HSP 1 Score: 263 bits (672), Expect = 8.470e-86
Identity = 135/235 (57.45%), Postives = 170/235 (72.34%), Query Frame = 1 
Query:    1 MDVSGAAFGNQSMYFGNLHIQTYSQN*FANPQGAEGAPILNELSIESHKAPSGRRHHVVGFEYDADLSDRRHAVYHHRATKRVVMANRGTVPSKLRDLYTDAALTVGTFKGTKHYQNAVRKYQEVQKKYGKGQNYRLTGHSLGGMTTVALHHRLPHSTSSSTAWNPPGSIPGVFSSGIQKLGYKTRTQKKV*AYHPSFVNTLDPVSILSRLRKGLKNQKKF-SLHPYSLTQWQGF 702
            MDVSG AF NQ MYF N  I  Y  + F     AE  P+ +E+S+ES+K+PS RR ++VGF+YD  LSDRRHAVY H A KRV+M +RGT P +LRDLY+DAALT+G FKGTKHY+ +V+KYQ+VQ KYG  Q+Y L+GHSLG   T AL +R P+ST +S  +N PGS+PG+ SSGIQ + Y+T TQKKV  +H  + NTLDPVSILSR RK  +NQK   S +P+SL  W  +
Sbjct:    1 MDVSGQAFSNQLMYFNNPTIAAYDSSEFNPESQAESHPLHHEISVESYKSPSERRRNIVGFQYDDQLSDRRHAVYRHAADKRVIMGSRGTNPKELRDLYSDAALTIGQFKGTKHYKTSVKKYQQVQDKYGPNQSYHLSGHSLGAHNTYALANRYPNSTQTSVGFNQPGSLPGLVSSGIQNI-YQTPTQKKVDKFHVMYNNTLDPVSILSRHRKIQRNQKAHHSWNPHSLQSWYNY 234
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig910.20658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A345MSH9_9VIRU8.470e-8657.45Triacylglycerol lipase n=1 Tax=CRESS virus sp. Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig910contigEcto-sp13_S_contig910:11438..12139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size702
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464182.2320228-UTR-Ecto-sp13_S_contig910:11437..116891681464182.2320228-UTR-Ecto-sp13_S_contig910:11437..11689Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig910 11438..11689 +
1681464182.2538023-UTR-Ecto-sp13_S_contig910:12013..121391681464182.2538023-UTR-Ecto-sp13_S_contig910:12013..12139Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig910 12014..12139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464182.2431111-CDS-Ecto-sp13_S_contig910:11689..120131681464182.2431111-CDS-Ecto-sp13_S_contig910:11689..12013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig910 11690..12013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig910.20658.1prot_Ecto-sp13_S_contig910.20658.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig910 11690..12013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig910.20658.1

>prot_Ecto-sp13_S_contig910.20658.1 ID=prot_Ecto-sp13_S_contig910.20658.1|Name=mRNA_Ecto-sp13_S_contig910.20658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MANRGTVPSKLRDLYTDAALTVGTFKGTKHYQNAVRKYQEVQKKYGKGQN
YRLTGHSLGGMTTVALHHRLPHSTSSSTAWNPPGSIPGVFSSGIQKLGYK
TRTQKKV*
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mRNA from alignment at Ecto-sp13_S_contig910:11438..12139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig910.20658.1 ID=mRNA_Ecto-sp13_S_contig910.20658.1|Name=mRNA_Ecto-sp13_S_contig910.20658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig910:11438..12139+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGTATCGGGCGCTGCATTCGGTAACCAATCAATGTATTTTGGTAA
CCTCCACATTCAAACGTATTCCCAAAATTAGTTCGCGAACCCACAAGGTG
CAGAGGGTGCCCCCATCCTGAACGAGCTCAGTATTGAATCACATAAAGCT
CCAAGTGGAAGACGCCATCACGTAGTAGGTTTCGAGTACGACGCTGACCT
CAGCGACAGGCGACACGCCGTGTACCACCATAGAGCGACCAAAAGGGTTG
TGATGGCCAATAGGGGGACGGTCCCGTCCAAACTACGCGATCTCTACACG
GACGCAGCGTTAACTGTAGGTACGTTCAAAGGTACCAAACATTATCAGAA
TGCGGTCAGAAAATACCAGGAGGTACAAAAAAAATACGGGAAGGGCCAAA
ATTACCGTTTGACGGGGCATTCGCTAGGAGGGATGACAACAGTCGCCCTT
CATCACAGATTACCCCATTCCACCTCCTCAAGCACGGCTTGGAACCCACC
AGGTTCAATCCCAGGAGTATTTTCATCAGGTATTCAGAAGTTGGGTTATA
AAACACGAACCCAAAAGAAGGTTTAGGCTTACCATCCGAGCTTCGTCAAT
ACTCTTGACCCCGTCTCGATTCTCAGTCGACTCAGAAAAGGGCTCAAGAA
CCAGAAAAAGTTTTCACTGCATCCTTATAGCCTAACACAGTGGCAAGGAT
TT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig910:11438..12139+

>mRNA_Ecto-sp13_S_contig910.20658.1 ID=mRNA_Ecto-sp13_S_contig910.20658.1|Name=mRNA_Ecto-sp13_S_contig910.20658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig910:11438..12139+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAATAGGGGGACGGTCCCGTCCAAACTACGCGATCTCTACACGGA
CGCAGCGTTAACTGTAGGTACGTTCAAAGGTACCAAACATTATCAGAATG
CGGTCAGAAAATACCAGGAGGTACAAAAAAAATACGGGAAGGGCCAAAAT
TACCGTTTGACGGGGCATTCGCTAGGAGGGATGACAACAGTCGCCCTTCA
TCACAGATTACCCCATTCCACCTCCTCAAGCACGGCTTGGAACCCACCAG
GTTCAATCCCAGGAGTATTTTCATCAGGTATTCAGAAGTTGGGTTATAAA
ACACGAACCCAAAAGAAGGTTTAG
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