mRNA_Ecto-sp13_S_contig909.20646.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig909.20646.1 vs. uniprot
Match: D8LG98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG98_ECTSI) HSP 1 Score: 380 bits (976), Expect = 1.350e-126 Identity = 183/198 (92.42%), Postives = 189/198 (95.45%), Query Frame = 1
Query: 124 MKFSSTLFTGASLLFAAVAVAAKEDTSCSSSTAADADVSGCPDPVGAVLGLFDCVTKKDSSCAAAAYDPGFQRFHNEESTGAIAVSDPGWWAGAFSVVDISFDVKFTSKPAPNTASVRYLEMVTTSDGRSLGLPDPRSDYPFNFTVVQHEHAIGHVDDDCKFTFWGQYGDNKEQTDVDVAVANMMSCMGGGPCGTAPA 717
MKFSS L TGASLLFAAVAVAAKE TSCSSSTAADAD+ GCPDPVGAVL LFDCVTKKDS+CAAAAYDPGFQRFHNEESTGA+AVSDPGWWAGAFSVVDISFDVKFT+ PAPNTASVRYLE VTTSDGRSLGLPDPR DYPFNFTVVQHEHAIGHVDD+CKFTFWGQYGDNKEQTDVD A+ANMMSCMGGGPCGTAPA
Sbjct: 1 MKFSSALITGASLLFAAVAVAAKEGTSCSSSTAADADIRGCPDPVGAVLALFDCVTKKDSACAAAAYDPGFQRFHNEESTGAMAVSDPGWWAGAFSVVDISFDVKFTNNPAPNTASVRYLETVTTSDGRSLGLPDPRFDYPFNFTVVQHEHAIGHVDDNCKFTFWGQYGDNKEQTDVDAAIANMMSCMGGGPCGTAPA 198
BLAST of mRNA_Ecto-sp13_S_contig909.20646.1 vs. uniprot
Match: A0A6H5JQE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE6_9PHAE) HSP 1 Score: 238 bits (608), Expect = 3.210e-72 Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 1
Query: 376 VSDPGWWAGAFSVVDISFDVKFTSKPAPNTASVRYLEMVTTSDGRSLGLPDPRSDYPFNFTVVQHEHAIGHVDDDCKFTFWGQYGDNKEQTDVDVAVANMMSCMGGGPCGTAPA 717
VSD WW GAFSVVDISFDVKFT+KPAPNTASVRYLEMVTTSDGRSLGLPDPRSDYPFNFTVVQHEHAIGHVDDDCKFTFWGQYGDNKEQTDVDVAVANMMSCMGGGPCGTAPA
Sbjct: 41 VSDSEWWDGAFSVVDISFDVKFTNKPAPNTASVRYLEMVTTSDGRSLGLPDPRSDYPFNFTVVQHEHAIGHVDDDCKFTFWGQYGDNKEQTDVDVAVANMMSCMGGGPCGTAPA 154
BLAST of mRNA_Ecto-sp13_S_contig909.20646.1 vs. uniprot
Match: D7FMJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ9_ECTSI) HSP 1 Score: 239 bits (609), Expect = 2.130e-71 Identity = 108/157 (68.79%), Postives = 128/157 (81.53%), Query Frame = 1
Query: 241 GCPDPVGAVLGLFDCVTKKDSSCAAAAYDPGFQRFHNEESTGAIAVSDPGWWAGAFSVVDISFDVKFTSKPAPNTASVRYLEMVTTSDGRSLGLPDPRSDYPFNFTVVQHEHAIGHVDDDCKFTFWGQYGDNKEQTDVDVAVANMMSCMGGGPCGTA 711
GC DPVGAVL LFDCVT KDS CAAA YDPGFQRFHNE TG I VS+P +WAGAF+VVD+SFD+KFT+ P+PN ASVRY+E VTT+DG SLG+P +YPFN T++QHEH + VDDDC F W QYGD++EQTDVDV VA+++SC+ GGPCG A
Sbjct: 66 GCSDPVGAVLNLFDCVTNKDSVCAAAGYDPGFQRFHNENFTGDIPVSEPDYWAGAFAVVDLSFDMKFTNNPSPNRASVRYIETVTTTDGLSLGVP-ATFEYPFNVTILQHEHVLVDVDDDCNFVLWDQYGDDQEQTDVDVVVADLLSCVSGGPCGPA 221
BLAST of mRNA_Ecto-sp13_S_contig909.20646.1 vs. uniprot
Match: A0A6H5J7U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U4_9PHAE) HSP 1 Score: 234 bits (598), Expect = 7.810e-70 Identity = 120/215 (55.81%), Postives = 147/215 (68.37%), Query Frame = 1
Query: 139 TLFTGASLLFAAVAVAAK-----------------------EDTSCSSSTAADADVSG-CPDPVGAVLGLFDCVTKKDSSCAAAAYDPGFQRFHNEESTGAIAVSDPGWWAGAFSVVDISFDVKFTSKPAPNTASVRYLEMVTTSDGRSLGLPDPRSDYPFNFTVVQHEHAIGHVDDDCKFTFWGQYGDNKEQTDVDVAVANMMSCMGGGPCGTA 711
++FT ASLL A+ A A K ED+S SS+ + G C DPVGAVL LF CVT KDS CAAA YDPGFQRFHNE TG + VS+P +W GAF+VVD SFD+KFT+ P+PN ASVRY+E VTT+DG SLG+P +YPFN T++QHEHA+ VDDDC F W QYGD++EQTDV+V VA+++SC+GGG CG A
Sbjct: 4 SIFTAASLLIASAAAAKKGAFPNNSVLREGRGRSTGGSRNGEDSSSDSSSHDNMGTQGGCSDPVGAVLNLFGCVTNKDSMCAAAGYDPGFQRFHNENFTGDLPVSEPDYWTGAFAVVDFSFDIKFTNNPSPNRASVRYIEAVTTTDGLSLGVP-ATFEYPFNVTILQHEHALVDVDDDCNFVLWDQYGDDQEQTDVEVVVADLLSCVGGGACGPA 217
BLAST of mRNA_Ecto-sp13_S_contig909.20646.1 vs. uniprot
Match: A0A6H5K3F1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F1_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.990e-38 Identity = 76/84 (90.48%), Postives = 77/84 (91.67%), Query Frame = 1
Query: 124 MKFSSTLFTGASLLFAAVAVAAKEDTSCSSSTAADADVSGCPDPVGAVLGLFDCVTKKDSSCAAAAYDPGFQRFHNEESTGAIA 375
MKFSS L TGA LLFAA AVAAKEDTSCSS TAADADVSGCPDPVGAVL LFDCVTKKDS+CAAAAYDPGFQRFHNEESTGA A
Sbjct: 1 MKFSSALVTGAYLLFAAAAVAAKEDTSCSSLTAADADVSGCPDPVGAVLALFDCVTKKDSACAAAAYDPGFQRFHNEESTGATA 84
BLAST of mRNA_Ecto-sp13_S_contig909.20646.1 vs. uniprot
Match: A0A7S2I0Z0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I0Z0_9STRA) HSP 1 Score: 142 bits (358), Expect = 9.730e-35 Identity = 71/175 (40.57%), Postives = 101/175 (57.71%), Query Frame = 1
Query: 238 SGCPDPVGAVLGLFDCVTKKDSSCAAAAYDPG-FQRFHNEESTGAIAVSDPGWWAGAFSVVDISFDVKFTSKPAPNTASVRYLEMVTTSDGRSLGLPDPRSDYPFNFTVVQHEHAIGHVDDDCKFTFWGQYGDNKEQTDVDVAVANMMSCMG-GGPCGTAPA*KIYPPWMRPLRK 756
S C DP+ ++L DC+ +D +C++A Y+ F + HN T + S +WAGAF+++DI D PN AS+RY+E V ++G GLP P SD+PF ++QHEHA+ VDDDCK W QYGDNKEQ+DVD A ++ +G C + P P +P +K
Sbjct: 71 SECADPLASILVTLDCIEAEDVACSSAGYNSSSFVKLHNGVDTNTVIDSSGSFWAGAFALLDIIMDYNHQMNIGPNQASIRYVEKVIFTNGAEFGLP-PSSDFPFGAEMIQHEHALVTVDDDCKMVLWDQYGDNKEQSDVDEAAMMILCAVGLSEMCSSIPPPDSPPITTKPAKK 244
BLAST of mRNA_Ecto-sp13_S_contig909.20646.1 vs. uniprot
Match: UPI0018AA1AEA (hypothetical protein n=1 Tax=Aliikangiella sp. G2MR2-5 TaxID=2788943 RepID=UPI0018AA1AEA) HSP 1 Score: 105 bits (263), Expect = 6.300e-23 Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 1
Query: 238 SGCPDPVGAVLGLFDCVTKKDSSCAAAAYDPGFQRFHNEESTGAIAVSDPGW--WAGAFSVVDISFDVKFTSKPAPNTASVRYLEMVTTSDGRSLGLPDPRSDYPFNFTVVQHEHAIGHVDDDCKFTFWGQYGDNKEQTDVDVAVANMM 678
S C DPV +V+ + +C+ +++ CAA+ Y GF + HN T + PG+ W GAF +D D ++ + N S+RY+E VT +DG T QHEHA+ V+ C+ T W QYGDNKEQ DVD + +
Sbjct: 29 STCDDPVASVMRIMNCIQSENALCAASGYASGFTKLHNRIDT---ETNKPGYFFWLGAFMFIDFELDFDHVAQVSDNQVSMRYVETVTFNDGE---------------TFKQHEHALVTVNSSCRMTLWDQYGDNKEQQDVDDKASTLF 159
BLAST of mRNA_Ecto-sp13_S_contig909.20646.1 vs. uniprot
Match: A0A545T8M6_9GAMM (Uncharacterized protein n=1 Tax=Aliikangiella marina TaxID=1712262 RepID=A0A545T8M6_9GAMM) HSP 1 Score: 96.7 bits (239), Expect = 1.030e-19 Identity = 50/147 (34.01%), Postives = 73/147 (49.66%), Query Frame = 1
Query: 244 CPDPVGAVLGLFDCVTKKDSSCAAAAYDPGFQRFHNEESTGAIAVSDPGW--WAGAFSVVDISFDVKFTSKPAPNTASVRYLEMVTTSDGRSLGLPDPRSDYPFNFTVVQHEHAIGHVDDDCKFTFWGQYGDNKEQTDVDVAVANMM 678
C DP AV+ + +C+ +++ CAA+ Y F ++HN T + PG+ W GAF +D + A N S+RY+E VT +DG Q+EHA+ V++ C+ W QYGDNKEQ DVD A +
Sbjct: 29 CDDPAAAVMRIMNCIENENAFCAASGYASNFAKYHNTLDTDT---NRPGYFFWLGAFLFIDFELEFDHVVNVAENQVSMRYIETVTFNDGE---------------VFTQYEHALVTVNNSCRMEMWDQYGDNKEQQDVDDKAATLF 157 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig909.20646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig909.20646.1 >prot_Ecto-sp13_S_contig909.20646.1 ID=prot_Ecto-sp13_S_contig909.20646.1|Name=mRNA_Ecto-sp13_S_contig909.20646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp MKFSSTLFTGASLLFAAVAVAAKEDTSCSSSTAADADVSGCPDPVGAVLGback to top mRNA from alignment at Ecto-sp13_S_contig909:5640..10889+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig909.20646.1 ID=mRNA_Ecto-sp13_S_contig909.20646.1|Name=mRNA_Ecto-sp13_S_contig909.20646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5250bp|location=Sequence derived from alignment at Ecto-sp13_S_contig909:5640..10889+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig909:5640..10889+ >mRNA_Ecto-sp13_S_contig909.20646.1 ID=mRNA_Ecto-sp13_S_contig909.20646.1|Name=mRNA_Ecto-sp13_S_contig909.20646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig909:5640..10889+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |