mRNA_Ecto-sp13_S_contig90697.20628.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig90697.20628.1
Unique NamemRNA_Ecto-sp13_S_contig90697.20628.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: A0A6H5KLR8_9PHAE (Gal_mutarotas_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR8_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 4.890e-57
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:    1 QDVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGN-VSHCCYP 291
            QDVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGN     C+P
Sbjct:  468 QDVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGNDFDGWCWP 565
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: D7G789_ECTSI (Alpha-glucosidase II alpha subunit, family GH31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G789_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 2.630e-56
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 1 
Query:    1 QDVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGN-VSHCCYP 291
            QDVL+VD+GFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRD KYAVHKEATAKGLYIKDKDGN     C+P
Sbjct:   17 QDVLAVDSGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDAKYAVHKEATAKGLYIKDKDGNDFDGWCWP 114
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: A0A812UNB7_9DINO (ModA protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UNB7_9DINO)

HSP 1 Score: 155 bits (391), Expect = 8.560e-42
Identity = 72/97 (74.23%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    4 DVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDG-NVSHCCYP 291
            DV +VDAGFEE DFPYDVIWLDIEHTDGKRYFTWDK LFP+P  M +K+AA G +MVTIVDPHIKRD  YAVH EAT+KGLYIKDK G ++   C+P
Sbjct:  395 DVAAVDAGFEEHDFPYDVIWLDIEHTDGKRYFTWDKHLFPNPVEMQNKLAARGHKMVTIVDPHIKRDNAYAVHSEATSKGLYIKDKHGGDLDGWCWP 491
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: A0A7S2STM5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STM5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.190e-41
Identity = 69/98 (70.41%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 QDVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGN-VSHCCYP 291
            +DV  V+A FEE DFPYDV+WLDIEHTDGKRYFTWDK LFP+PK MI+ ++AHGRRMVTI+DPHIKRD  Y +H+EAT KGLYIK+KDG+     C+P
Sbjct:  432 KDVAQVEAKFEELDFPYDVLWLDIEHTDGKRYFTWDKNLFPNPKAMIEGLSAHGRRMVTIIDPHIKRDNNYYIHREATEKGLYIKNKDGDDFDGWCWP 529
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: A0A7S2A9D9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9D9_TRICV)

HSP 1 Score: 152 bits (385), Expect = 1.330e-41
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:    4 DVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGNVSH--CCYP 291
            DV +V + FEE D+PYDV+WLDIEHTDGKRYFTWDK +FP PK M +K+ + GRRMVTI+DPHIKRD KY VHKEAT+KGLYIKDKDGN  +   C+P
Sbjct:   40 DVYAVHSKFEELDYPYDVLWLDIEHTDGKRYFTWDKSVFPHPKEMQEKLWSQGRRMVTIIDPHIKRDSKYHVHKEATSKGLYIKDKDGNKDYDGWCWP 137
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: A0A7S4DBU0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBU0_HETAK)

HSP 1 Score: 152 bits (384), Expect = 3.100e-41
Identity = 70/98 (71.43%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 QDVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDG-NVSHCCYP 291
            +DVL VDA FEE DFPYDVIWLDIEHTD KRYFTW+  LFPDP RMI+ VAAHGRRMVTIVDPH+KRD  Y +HK AT KG Y+KD+DG +    C+P
Sbjct:  101 KDVLQVDAKFEELDFPYDVIWLDIEHTDDKRYFTWNSHLFPDPARMINAVAAHGRRMVTIVDPHVKRDANYRIHKIATDKGYYVKDRDGEDFDGWCWP 198
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: A0A1Z5JSS4_FISSO (Alpha 1,3-glucosidase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSS4_FISSO)

HSP 1 Score: 149 bits (376), Expect = 6.790e-40
Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 1 
Query:    1 QDVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDG--NVSHCCYP 291
            +DV  V   FEE D+PYDV+WLDIEHTDGKRYFTWDKGLFP P+ M +K+A+ GRRMVTI+DPHIKRD KY +HKEA +KGLYIKDKDG  +    C+P
Sbjct:  475 KDVYYVHEKFEELDYPYDVLWLDIEHTDGKRYFTWDKGLFPHPEEMQEKLASQGRRMVTIIDPHIKRDKKYYIHKEAESKGLYIKDKDGQKDFDGWCWP 573
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: A0A7S1C9T9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9T9_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.190e-40
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    4 DVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGN-VSHCCYP 291
            DV +VDA FEE +FPYDV+WLDIEHTDGKRYFTWDK LFP P  M DK+A  GR+MVTIVDPHIKRD  Y VH EA+ +GLY+++KDG      C+P
Sbjct:   76 DVFAVDAKFEEHNFPYDVLWLDIEHTDGKRYFTWDKPLFPAPAAMQDKLAERGRKMVTIVDPHIKRDPGYHVHSEASREGLYVRNKDGGEFDGWCWP 172
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: A0A176WKH6_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WKH6_MARPO)

HSP 1 Score: 148 bits (373), Expect = 2.350e-39
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    4 DVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDG-NVSHCCYP 291
            DV  VDAGF+E D PYDV+WLDIEHTDGK+YFTWD  LFP+PK M DK+AA GR+MVTIVDPHIKRD  Y +HKEA +KG YIKDK G +    C+P
Sbjct:  404 DVAQVDAGFDEHDIPYDVLWLDIEHTDGKKYFTWDSVLFPNPKDMQDKIAAKGRKMVTIVDPHIKRDSNYYIHKEAQSKGFYIKDKHGRDYDGWCWP 500
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BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Match: A0A7S4K6T3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6T3_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.250e-39
Identity = 66/98 (67.35%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    4 DVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKVAAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGNVSH--CCYP 291
            DV +V + FEE D+PYDV+WLDIEHTDGKRYFTWD   FP+PK M +K+ + GRRMVTI+DPHIKRD KY +HKEATAKGLYIKDK+G   +   C+P
Sbjct:  599 DVYAVHSKFEELDYPYDVLWLDIEHTDGKRYFTWDSNTFPNPKEMQEKLWSQGRRMVTIIDPHIKRDDKYRIHKEATAKGLYIKDKEGKKDYDGWCWP 696
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig90697.20628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLR8_9PHAE4.890e-5793.88Gal_mutarotas_2 domain-containing protein (Fragmen... [more]
D7G789_ECTSI2.630e-5690.82Alpha-glucosidase II alpha subunit, family GH31 n=... [more]
A0A812UNB7_9DINO8.560e-4274.23ModA protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A7S2STM5_9STRA1.190e-4170.41Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2A9D9_TRICV1.330e-4170.41Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4DBU0_HETAK3.100e-4171.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5JSS4_FISSO6.790e-4068.69Alpha 1,3-glucosidase n=2 Tax=Fistulifera solaris ... [more]
A0A7S1C9T9_9STRA8.190e-4067.01Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A176WKH6_MARPO2.350e-3969.07Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A7S4K6T3_9STRA3.250e-3967.35Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig90697contigEcto-sp13_S_contig90697:31..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score192.2
Seed ortholog evalue1.1e-46
Seed eggNOG ortholog2880.D7G789
Preferred nameROT2
Model size291
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K01187,ko:K05546
KEGG ReactionR00028,R00801,R00802,R05980,R05981,R06087,R06088
KEGG Pathwayko00052,ko00500,ko00510,ko01100,ko04141,map00052,map00500,map00510,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0000902,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006073,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009250,GO:0009272,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009826,GO:0009987,GO:0010035,GO:0010038,GO:0010383,GO:0012505,GO:0015926,GO:0016043,GO:0016049,GO:0016051,GO:0016787,GO:0016798,GO:0017177,GO:0019538,GO:0030243,GO:0030244,GO:0030587,GO:0031288,GO:0031974,GO:0032502,GO:0032989,GO:0032991,GO:0033692,GO:0033919,GO:0034406,GO:0034637,GO:0034645,GO:0036211,GO:0040007,GO:0042221,GO:0042546,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043687,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048589,GO:0048856,GO:0048869,GO:0050896,GO:0051273,GO:0051274,GO:0051278,GO:0051703,GO:0051704,GO:0051707,GO:0060560,GO:0070013,GO:0070085,GO:0070589,GO:0070592,GO:0070879,GO:0070880,GO:0071554,GO:0071704,GO:0071840,GO:0071852,GO:0071966,GO:0090599,GO:0090600,GO:0090702,GO:0098542,GO:0099120,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.alpha-1,3-glucosidase activity
EggNOG OGsCOG1501@1,KOG1066@2759
EC3.2.1.20,3.2.1.84
Cds size291
COG Functional cat.G
CAZyGH31
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464179.5526466-CDS-Ecto-sp13_S_contig90697:30..1771681464179.5526466-CDS-Ecto-sp13_S_contig90697:30..177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig90697 31..177 +
1681464179.5766804-CDS-Ecto-sp13_S_contig90697:394..5381681464179.5766804-CDS-Ecto-sp13_S_contig90697:394..538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig90697 395..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig90697.20628.1prot_Ecto-sp13_S_contig90697.20628.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig90697 31..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig90697.20628.1

>prot_Ecto-sp13_S_contig90697.20628.1 ID=prot_Ecto-sp13_S_contig90697.20628.1|Name=mRNA_Ecto-sp13_S_contig90697.20628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
QDVLSVDAGFEERDFPYDVIWLDIEHTDGKRYFTWDKGLFPDPKRMIDKV
AAHGRRMVTIVDPHIKRDGKYAVHKEATAKGLYIKDKDGNVSHCCYP
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mRNA from alignment at Ecto-sp13_S_contig90697:31..538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig90697.20628.1 ID=mRNA_Ecto-sp13_S_contig90697.20628.1|Name=mRNA_Ecto-sp13_S_contig90697.20628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=508bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90697:31..538+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATGTGCTATCGGTCGACGCCGGCTTCGAGGAGCGCGACTTCCCGTA
CGACGTGATCTGGCTGGACATCGAGCACACGGACGGCAAGCGGTACTTCA
CCTGGGACAAGGGGCTCTTCCCGGACCCCAAGAGGATGATCGACAAGGTT
TGGATCGGGCGTTTTATGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGT
GGGGTTGGTGCTGGGGTTGGTGTTTAGTTGTGTGCTGGTGTTAGTGGTGG
TGTTGGTTTTAATTGTCGTTGCTGTTGCGTTCTTCGCTCTCTGTTCGCTG
TGTGTCCTCGTCGTTGCCGCTACTGATGTCTTATATTCGCGTCGTTGGTA
TCCATTCGATGTAGGTGGCGGCCCACGGCAGACGGATGGTGACGATCGTC
GACCCGCACATCAAGCGAGACGGCAAGTACGCCGTGCACAAGGAGGCCAC
CGCAAAGGGCCTCTACATCAAGGACAAGGACGGCAATGTGAGCCACTGCT
GCTATCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig90697:31..538+

>mRNA_Ecto-sp13_S_contig90697.20628.1 ID=mRNA_Ecto-sp13_S_contig90697.20628.1|Name=mRNA_Ecto-sp13_S_contig90697.20628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90697:31..538+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATGTGCTATCGGTCGACGCCGGCTTCGAGGAGCGCGACTTCCCGTA
CGACGTGATCTGGCTGGACATCGAGCACACGGACGGCAAGCGGTACTTCA
CCTGGGACAAGGGGCTCTTCCCGGACCCCAAGAGGATGATCGACAAGGTG
GCGGCCCACGGCAGACGGATGGTGACGATCGTCGACCCGCACATCAAGCG
AGACGGCAAGTACGCCGTGCACAAGGAGGCCACCGCAAAGGGCCTCTACA
TCAAGGACAAGGACGGCAATGTGAGCCACTGCTGCTATCCG
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