mRNA_Ecto-sp13_S_contig9060.20621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9060.20621.1
Unique NamemRNA_Ecto-sp13_S_contig9060.20621.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9060.20621.1 vs. uniprot
Match: D7G0T1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T1_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.410e-24
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:   16 HVADPAVSSKECSFYKSDLVPSSTAADLNDGDGYKNVPTHNAVPTSTVTSSVRSPSESASSDRAKADRKK 225
            HVADPAVS KE SF+KSD  P+STAAD N GDG KNVP H+AVPTSTVTSSVRSPSES SSDRAKAD KK
Sbjct:  109 HVADPAVSFKEPSFHKSDPAPTSTAADPNAGDGDKNVPAHDAVPTSTVTSSVRSPSESTSSDRAKADGKK 178
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BLAST of mRNA_Ecto-sp13_S_contig9060.20621.1 vs. uniprot
Match: A0A6H5K6E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.720e-17
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   16 HVADPAVSSKECSFYKSDLVPSSTAADLNDGDGYKNVPTHNAVPTSTVTSSVRSPSESASSDRAKADRKK 225
            HV+D   S KE SF+K D  PSSTAAD NDGDG KNVP H A PTSTVTSSV SPSES SSD AKA+RK+
Sbjct:    2 HVSDLVSSLKEPSFHKPDPAPSSTAADPNDGDGDKNVPAHYAFPTSTVTSSVYSPSESTSSDLAKAERKR 71
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BLAST of mRNA_Ecto-sp13_S_contig9060.20621.1 vs. uniprot
Match: A0A6H5LGE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGE1_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 3.610e-5
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 2 
Query:  104 MVMATRTFRLIMPSRPPRSRPLFVRRLRALRRIVRKLTEK 223
            MVMATRT RL++P   PRSRPLF+R LR+LRRI  KL EK
Sbjct:    1 MVMATRTSRLMIPFPLPRSRPLFIRHLRSLRRIAPKLNEK 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9060.20621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0T1_ECTSI1.410e-2481.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6E6_9PHAE1.720e-1771.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGE1_9PHAE3.610e-570.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9060contigEcto-sp13_S_contig9060:6182..6406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size225
Hectar predicted targeting categoryother localisation
Exons1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464179.0429175-CDS-Ecto-sp13_S_contig9060:6181..64061681464179.0429175-CDS-Ecto-sp13_S_contig9060:6181..6406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9060 6182..6406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9060.20621.1prot_Ecto-sp13_S_contig9060.20621.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9060 6182..6406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9060.20621.1

>prot_Ecto-sp13_S_contig9060.20621.1 ID=prot_Ecto-sp13_S_contig9060.20621.1|Name=mRNA_Ecto-sp13_S_contig9060.20621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
SKQQQHVADPAVSSKECSFYKSDLVPSSTAADLNDGDGYKNVPTHNAVPT
STVTSSVRSPSESASSDRAKADRKK
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mRNA from alignment at Ecto-sp13_S_contig9060:6182..6406-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9060.20621.1 ID=mRNA_Ecto-sp13_S_contig9060.20621.1|Name=mRNA_Ecto-sp13_S_contig9060.20621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9060:6182..6406- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAAACAACAACAGCACGTGGCCGACCCCGCTGTTTCTTCGAAAGAATG
CTCCTTCTACAAGTCCGACCTTGTGCCGTCCTCCACTGCTGCGGACCTCA
ACGATGGTGATGGCTACAAGAACGTTCCGACTCATAATGCCGTCCCGACC
TCCACGGTCACGTCCTCTGTTCGTTCGCCGTCTGAGAGCGCTTCGTCGGA
TCGTGCGAAAGCTGACCGAAAAAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9060:6182..6406-

>mRNA_Ecto-sp13_S_contig9060.20621.1 ID=mRNA_Ecto-sp13_S_contig9060.20621.1|Name=mRNA_Ecto-sp13_S_contig9060.20621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9060:6182..6406- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCAAACAACAACAGCACGTGGCCGACCCCGCTGTTTCTTCGAAAGAATG
CTCCTTCTACAAGTCCGACCTTGTGCCGTCCTCCACTGCTGCGGACCTCA
ACGATGGTGATGGCTACAAGAACGTTCCGACTCATAATGCCGTCCCGACC
TCCACGGTCACGTCCTCTGTTCGTTCGCCGTCTGAGAGCGCTTCGTCGGA
TCGTGCGAAAGCTGACCGAAAAAAA
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