mRNA_Ecto-sp13_S_contig9060.20619.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9060.20619.1
Unique NamemRNA_Ecto-sp13_S_contig9060.20619.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9060.20619.1 vs. uniprot
Match: D7G0S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S9_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 3.570e-42
Identity = 120/149 (80.54%), Postives = 121/149 (81.21%), Query Frame = -3 
Query:    1 MAWWAPKGSASSATPVDVDDDNEAVIDLTSDMEDSXXXXXXXXXXXXXXXXXXXXXXXNAGVEVL*--------KKEVKNEGLKRAAEASAKAQQSGEVQVTDKPPEMINEEVASRPAKRSRGGDEEDMEVVGTTGTAKLPHNRFACTE 423
            MAWWAPKGSA+SATPVD                  XXXXXXXXXXXXXXXXXXXXXXXNAGVEVL         KKEVKNEGLKRAAEASAKAQQSGEVQVTDKPPEMINEEVA RPAKRSRGGDEEDMEVVGTTGTAKLPHNRFACTE
Sbjct:    1 MAWWAPKGSAASATPVDX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGVEVLSPWALKMQAKKEVKNEGLKRAAEASAKAQQSGEVQVTDKPPEMINEEVARRPAKRSRGGDEEDMEVVGTTGTAKLPHNRFACTE 144
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BLAST of mRNA_Ecto-sp13_S_contig9060.20619.1 vs. uniprot
Match: A0A6H5JZM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM5_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.990e-40
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -3 
Query:    1 KKEVKNEGLKRAAEASAKAQQSGEVQVTDKPPEMINEEVASRPAKRSRGGDEEDMEVVGTTGTAKLPHNRFACTE 225
            KKEVKNEGLKRAAEAS KAQQSGEVQVTDKPPEMINEEVASRPAKRSRGGDEEDMEVVGTTGTAKLPHNRFACTE
Sbjct:   16 KKEVKNEGLKRAAEASTKAQQSGEVQVTDKPPEMINEEVASRPAKRSRGGDEEDMEVVGTTGTAKLPHNRFACTE 90
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BLAST of mRNA_Ecto-sp13_S_contig9060.20619.1 vs. uniprot
Match: A0A6H5KW09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW09_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 9.900e-36
Identity = 86/142 (60.56%), Postives = 100/142 (70.42%), Query Frame = -3 
Query:    1 MAWWAPKGSASSATPVDVDDDNEAVIDLTSDMEDSXXXXXXXXXXXXXXXXXXXXXXXNAGVEVL*-KKEVKNEGLKRAAEASAKAQQSGEVQVTDKPPEMINEEVASRPAKRSRGGDEEDMEVVGTTGTAKLPHNRFACTE 423
            MAWW    + +S T   ++D++E  IDLTSD E S                         G++++  K+EVKNEG+KRAAEASAKAQQS EVQVTDKPPEMINEEVASRPAKRS+ GDE+DMEVVGTTGTAKLPHNRFACTE
Sbjct:    1 MAWWGALANGAS-TGAALEDNSEDPIDLTSDTEISPLPGADGVGIESAAW----------GLKLMAAKQEVKNEGVKRAAEASAKAQQSDEVQVTDKPPEMINEEVASRPAKRSKEGDEDDMEVVGTTGTAKLPHNRFACTE 131
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BLAST of mRNA_Ecto-sp13_S_contig9060.20619.1 vs. uniprot
Match: D7G0T2_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T2_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.780e-29
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = -3 
Query:    1 KKEVKNEGLKRAAEASAKAQQSGEVQVTDKPP-EMIN----EEVASRPAKRSRGGDEEDMEVVGTTGTAKLPHNRFACTE 225
            KKEVKNEG+KRAAEASA AQQSGEV VTDKPP E IN    EE ASRPAKRS+GGDEEDMEVVGTTGTAKLPHNRFACTE
Sbjct:  138 KKEVKNEGVKRAAEASAMAQQSGEVLVTDKPPAEKINQEEQEEGASRPAKRSKGGDEEDMEVVGTTGTAKLPHNRFACTE 217
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9060.20619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G0S9_ECTSI3.570e-4280.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZM5_9PHAE1.990e-4098.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW09_9PHAE9.900e-3660.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T2_ECTSI4.780e-2986.25Helicase ATP-binding domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9060contigEcto-sp13_S_contig9060:663..3252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size608
Hectar predicted targeting categoryother localisation
Exons2
Cds size576
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464178.940112-CDS-Ecto-sp13_S_contig9060:662..8891681464178.940112-CDS-Ecto-sp13_S_contig9060:662..889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9060 663..889 +
1681464178.9513664-CDS-Ecto-sp13_S_contig9060:2871..32201681464178.9513664-CDS-Ecto-sp13_S_contig9060:2871..3220Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9060 2872..3220 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464178.9629855-UTR-Ecto-sp13_S_contig9060:3220..32521681464178.9629855-UTR-Ecto-sp13_S_contig9060:3220..3252Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9060 3221..3252 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9060.20619.1prot_Ecto-sp13_S_contig9060.20619.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9060 663..3220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9060.20619.1

>prot_Ecto-sp13_S_contig9060.20619.1 ID=prot_Ecto-sp13_S_contig9060.20619.1|Name=mRNA_Ecto-sp13_S_contig9060.20619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
LRAGEAVVRQLCRAGRANHLHVFLVSPPAALGWAAGDLFVDHLRRLVRDL
DLAALLGLGGGLRGPLQPLVLHLLLLQDLDASVARGRRCCSCSRACSCSC
SCCRRWRVLHIGREVDDGFVVVINVHGRCRRRGALGCPPCHDSSCRRIAF
RKTRTPPLYHTFSIKDCCCGSAATRVEGEIGWSQVLSGVTP*
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mRNA from alignment at Ecto-sp13_S_contig9060:663..3252+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9060.20619.1 ID=mRNA_Ecto-sp13_S_contig9060.20619.1|Name=mRNA_Ecto-sp13_S_contig9060.20619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9060:663..3252+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCGTGCAGGCGAAGCGGTTGTGCGGCAGCTTTGCCGTGCCGGTCGTGC
CAACCACCTCCATGTCTTCCTCGTCTCCCCCCCTGCTGCGCTTGGCTGGG
CGGCTGGCGACCTCTTCGTTGATCATCTCCGGCGGCTTGTCCGTGACTTG
GACCTCGCCGCTCTGCTGGGCCTTGGCGGAGGCCTCCGCGGCCCTCTTCA
GCCCCTCGTTCTTCACCTCCTTCTTCTGCGAATGTTGGGATTGGATGGAC
GGGGTTCCGCGCATAAGAAGGCTTCAGCGTGAATTACTGGTAGACGTGCG
AGACGTCGTGTACTTGTCCCAAGAAAAGCACTTCATTGTAATATCACGGA
AAACCATTGAGATGACTGGTGAGTGCGAGTCGTGTGCTTGTCCAAGAAAC
GCTAATTATTGTTGTGCCCTGGAACAGCTTCGAGGTGAACCGGTACGTGA
GAGTCGCGTGCTTGTCCGAGAAATGCCCTTCATAATTTGAACCATGGTTG
ACCTTTGTAGCAAATAGGGCTTGTTTCGAAACCAGATCACCCCCTTTGCC
CAACGCCCAAACAACACTGCACAACCGGTGACCGTCTACCAAGTGGTGCC
CTTCACGTGCATGTGCCCTGAAGTTCTCCTCTATGATTGCATGGCCTTTC
GGAAGAGACTGCGCAATTAACAGGTTTGTGTTGCTGTTGTCTGCACAGCA
GCTACTACGGCATTCCAGCAGCTATTGCGGACCGTACGATTGCAGCATGC
ACAAAAAAACCAACATGCCTAACCTGCAGCAGGCTCCTGCAACGTGCGGC
GGGACACTGACGAAGCATGGCGCGGTGTCGAGTAACAAATCTGTCCCATC
TACCACAGACCCAAGCACCGAACACGACGACAGATAAGTTATAAATTGCC
ACTACGACAGTGATACAAACCAGTAGAGCCCCCTGTATAGTTTCGATTGC
CGATATAGTCGGTGTTTTCGGCGGGCACGCACTGATTTTCCCAGTTGTTC
TGTACTTTGAATATTTAGTGCCGGTGACCGGAACAGTGAAATATCTGGGC
ACATACCGGTAATGAACAGGGACCTCCGCTGTGAACACGATTGGTTCACG
GCATGACTCTTCTGTTCGGTGCTACAGAGTAGATTGTACGATAGAGAAAA
ATGTCTGTTGCTGTAGCGTCTTAGAATCTGTGCTGAGGAACAACACCCGA
ACATGACAACGATACCCCGAAAGTGCTACTATAATACTACCGATAGGAAG
GAACGCAGGCGGTAGGTCTTCGGCGTGACGCCTCGTCCAAGTCAGGCACA
TGCGGCATGAAAATGCATGCCAGGCGTGCGATCTTTGTAAATACCACATC
CCGTTCGACTCTCGGTTATAACTTGAAATGGTAGTCTTTCGGTGTGTGTA
TCTATTTTTCCTGAATGATTTAGTGATGGTGAAAAAGGCCAAAAAAGGGC
TGAAACTTTGCCCGTGACCTCAATACACTGCTCCCAGCAGCGGGCTCGGC
TGCGTACGCCTTGTGCACGCCTTCGGCGTGCGTAACGGAATAGCCTGAAA
GGCTTCGTTGGTTTGCACCCGCCGTGTTACAACGCTACTTGCAGATAACC
CGCTTCCATGCATGCTACATGCCATTAATCATGCTTCATAGACTCGTTCT
GTAGTGTTTCTTTGATCAATGTATTGATGTGGATGAGACTACACAAGAGA
GGAACACGAATTTCAAATTTCAAATTTCGGATCACAAGCCCATGTTCTTT
CTCCTCTCTCTACTGGTGTGGCCGAAAGGGCGCTTGTTGCACGGCGATCT
ATTAGGCAAGAGGTAACATGTACAGAATGACGGTCCATACCATTCACGAC
CGCAGAGAGCATGCACACCGTCGTCGCCGCTGTGTACAACGGCTGGGCAC
AAACTAATCCCCTTTGCAACAGCTGCGGGCGTGTGCATACAACGGACTTT
ACACAGACCTCGGCAAGATCATTGCTGGCACGTTGCGCGAGGTGAACAAG
AACAGGTTGTGGAGTCTCGCGTGGACAGATGATCATTGAACTGGGGGAGA
TTGTTGGCCGCCTATACAGGCCAAGCAGGCCGGCGGTGGATATCTATTCA
GAGTCCCTCCCTCGCTGCTTGAAAGCGCATCGTCAGATGGAGCAAAAACA
TCATGATGGAAACAAGGCCGTTTGCACACACACCGCTCGCATCTTGACCG
CCCAGGGAGACAGGACCTCGACGCCAGCGTTGCTCGAGGAAGACGATGCT
GCTCCTGCTCCCGCGCCTGCTCCTGCTCCTGCTCCTGCTGCAGGCGATGG
CGAGTCCTCCATATCGGACGTGAGGTCGATGACGGCTTCGTTGTCGTCAT
CAACGTCCACGGGCGTTGCCGAAGACGCGGAGCCCTTGGGTGCCCACCAT
GCCATGATTCGAGCTGTCGTCGGATTGCTTTTCGAAAAACAAGGACACCA
CCGCTGTACCACACTTTTTCGATCAAAGACTGCTGTTGCGGGAGTGCTGC
AACACGGGTCGAGGGAGAGATCGGCTGGAGTCAAGTCCTCTCAGGTGTAA
CCCCGTAGCTGTACCTCTCTCACACCCACACACGGGAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9060:663..3252+

>mRNA_Ecto-sp13_S_contig9060.20619.1 ID=mRNA_Ecto-sp13_S_contig9060.20619.1|Name=mRNA_Ecto-sp13_S_contig9060.20619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9060:663..3252+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCGTGCAGGCGAAGCGGTTGTGCGGCAGCTTTGCCGTGCCGGTCGTGC
CAACCACCTCCATGTCTTCCTCGTCTCCCCCCCTGCTGCGCTTGGCTGGG
CGGCTGGCGACCTCTTCGTTGATCATCTCCGGCGGCTTGTCCGTGACTTG
GACCTCGCCGCTCTGCTGGGCCTTGGCGGAGGCCTCCGCGGCCCTCTTCA
GCCCCTCGTTCTTCACCTCCTTCTTCTACAGGACCTCGACGCCAGCGTTG
CTCGAGGAAGACGATGCTGCTCCTGCTCCCGCGCCTGCTCCTGCTCCTGC
TCCTGCTGCAGGCGATGGCGAGTCCTCCATATCGGACGTGAGGTCGATGA
CGGCTTCGTTGTCGTCATCAACGTCCACGGGCGTTGCCGAAGACGCGGAG
CCCTTGGGTGCCCACCATGCCATGATTCGAGCTGTCGTCGGATTGCTTTT
CGAAAAACAAGGACACCACCGCTGTACCACACTTTTTCGATCAAAGACTG
CTGTTGCGGGAGTGCTGCAACACGGGTCGAGGGAGAGATCGGCTGGAGTC
AAGTCCTCTCAGGTGTAACCCCGTAG
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