mRNA_Ecto-sp13_S_contig90592.20614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig90592.20614.1
Unique NamemRNA_Ecto-sp13_S_contig90592.20614.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: D8LBI3_ECTSI (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI3_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.620e-30
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADE 171
            PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADE
Sbjct:  241 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADE 297
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BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: A0A8J9X0N9_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X0N9_PHATR)

HSP 1 Score: 73.9 bits (180), Expect = 8.280e-15
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 174
            P TLVLDLE TL+ + + R+ GWR AKRPG+D FL+E++Q YEIV+++ S+ G+AD V
Sbjct:   11 PHTLVLDLENTLVSSTWDRRYGWRHAKRPGVDKFLRELAQYYEIVLYSPSIDGIADPV 68
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BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: A4RUZ3_OSTLU (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RUZ3_OSTLU)

HSP 1 Score: 74.3 bits (181), Expect = 1.000e-14
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 174
            P TLVLDL+ TL+ + + R++GWRV KRPG+DAFLK MSQ YE+V+FTD +    D +
Sbjct:   28 PHTLVLDLDDTLINSNWKRERGWRVFKRPGVDAFLKHMSQFYEMVIFTDQLMTYGDPI 85
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BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: A0A7R9U5W4_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5W4_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.600e-14
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFT 144
            PPTL+LDLEGTL    ++RK GWR AKRPG DAFLKEMS+ YEIV+F+
Sbjct:  128 PPTLILDLEGTLTRPEWSRKHGWRYAKRPGFDAFLKEMSKYYEIVLFS 175
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BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: A0A448YW51_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW51_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.840e-14
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 174
            P TLVLDLE TL+ + + RK+GWR AKRPG+D FL +M+Q YEIV+++ S+ G+AD V
Sbjct:  169 PHTLVLDLENTLVSSSWDRKRGWRHAKRPGVDKFLLDMAQYYEIVLYSPSIDGIADPV 226
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BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: A0A7S1BYC3_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYC3_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 4.850e-14
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 174
            P TLVLDLE TL+ + + RK GWR AKRPG+D FL++M+Q YEIV++T ++ G+A+ V
Sbjct:  176 PHTLVLDLENTLVSSTWDRKHGWRHAKRPGVDQFLRKMAQYYEIVLYTSTIQGVAEPV 233
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BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: A0A7S3PUE5_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUE5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.420e-14
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 174
            P TLVLDLE TL+ + + RK GWR AKRPG+D FL EM+Q YEIV+++ S  G+A+ V
Sbjct:  194 PHTLVLDLENTLVNSTWDRKHGWRFAKRPGVDKFLSEMAQYYEIVIYSPSHEGVAEPV 251
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BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: A0A7S2GPP0_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GPP0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.020e-14
Identity = 31/58 (53.45%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 174
            PPTLVLDLEGTL+ + + R+ GWR AKRPG+D FL++M+Q YEIV+F+++   + + +
Sbjct:  138 PPTLVLDLEGTLVKSTWDRRHGWRHAKRPGVDKFLQDMAQYYEIVLFSNNTASIVEPI 195
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BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: A0A7S1G064_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G064_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.360e-14
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 174
            P TLVLDLE TL+ + + RK GWR AKRPG+D FL++M+Q YEIV++T ++ G+A+ V
Sbjct:  176 PHTLVLDLENTLVSSTWDRKHGWRHAKRPGVDQFLRKMAQYYEIVLYTSTIQGVAEPV 233
[Close]
BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Match: A0A7S4AKD5_9STRA (Mitochondrial import inner membrane translocase subunit TIM50 n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKD5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.380e-14
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDSMGGLADEV 174
            P TLVLDLE TL+ + + RK+GWR AKRPG+D FL +M+Q YEIV+++ S+ G+AD V
Sbjct:  195 PHTLVLDLEKTLVSSSWDRKRGWRHAKRPGVDKFLIDMAQYYEIVLYSPSIDGIADPV 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig90592.20614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBI3_ECTSI9.620e-30100.00Mitochondrial import inner membrane translocase su... [more]
A0A8J9X0N9_PHATR8.280e-1556.90Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A4RUZ3_OSTLU1.000e-1456.90Mitochondrial import inner membrane translocase su... [more]
A0A7R9U5W4_9STRA2.600e-1470.83Mitochondrial import inner membrane translocase su... [more]
A0A448YW51_9STRA2.840e-1458.62Mitochondrial import inner membrane translocase su... [more]
A0A7S1BYC3_9STRA4.850e-1456.90Mitochondrial import inner membrane translocase su... [more]
A0A7S3PUE5_9STRA5.420e-1458.62Mitochondrial import inner membrane translocase su... [more]
A0A7S2GPP0_9STRA7.020e-1453.45Mitochondrial import inner membrane translocase su... [more]
A0A7S1G064_9STRA7.360e-1456.90Mitochondrial import inner membrane translocase su... [more]
A0A7S4AKD5_9STRA7.380e-1458.62Mitochondrial import inner membrane translocase su... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig90592contigEcto-sp13_S_contig90592:57..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score119.0
Seed ortholog evalue7.3e-25
Seed eggNOG ortholog2880.D8LBI3
Preferred nameTIMM50
Model size174
KEGG koko:K17496
KEGG TC3.A.8.1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001836,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0004725,GO:0005048,GO:0005102,GO:0005126,GO:0005134,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005886,GO:0006464,GO:0006470,GO:0006605,GO:0006626,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009987,GO:0012501,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0017038,GO:0019538,GO:0019866,GO:0023052,GO:0030150,GO:0030943,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0035335,GO:0036211,GO:0042277,GO:0042578,GO:0042886,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044455,GO:0044464,GO:0044743,GO:0044877,GO:0045184,GO:0046902,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0061024,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0070851,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090559,GO:0097190,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1990542
Exons2
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG2832@2759
Cds size174
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464178.5928173-CDS-Ecto-sp13_S_contig90592:56..1651681464178.5928173-CDS-Ecto-sp13_S_contig90592:56..165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig90592 57..165 -
1681464178.6061268-CDS-Ecto-sp13_S_contig90592:461..5261681464178.6061268-CDS-Ecto-sp13_S_contig90592:461..526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig90592 462..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig90592.20614.1prot_Ecto-sp13_S_contig90592.20614.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig90592 57..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig90592.20614.1

>prot_Ecto-sp13_S_contig90592.20614.1 ID=prot_Ecto-sp13_S_contig90592.20614.1|Name=mRNA_Ecto-sp13_S_contig90592.20614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
PPTLVLDLEGTLLGTIYTRKKGWRVAKRPGLDAFLKEMSQLYEIVVFTDS
MGGLADEV
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mRNA from alignment at Ecto-sp13_S_contig90592:57..526-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig90592.20614.1 ID=mRNA_Ecto-sp13_S_contig90592.20614.1|Name=mRNA_Ecto-sp13_S_contig90592.20614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=470bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90592:57..526- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCGACGCTTGTGCTGGACCTTGAGGGAACCCTCCTCGGCACCATCTA
CACCCGTAAGAAAGGGTGAGCTTGAGGAGCTGTGCATGCTCGCAAGCCAG
GGGCGGGTTTTCATGCGTGCGCTGTTAGTGTCATACATGGTTAGAACCGT
CTGTGCGGTGCGTAGGGCTTAAAACTGTTTTTGTGTTTCGTGTAGATGCC
GGGTGGTCGTCTTTGGGAAAGTCTCGAGGGCGGCTTGACCCTCCATTGTG
GAAACTTCTTGTCAGGCAAGTTTGTAGCCACCGCCTTGCCGCACGCATCG
TGCCGTTCTTCTCATGCTTTCGTTGTTTCCTGTCTCATTTCTCTGTGCTG
TCCTGAAACAGGTGGAGAGTTGCCAAGCGACCAGGCCTGGATGCGTTCCT
GAAGGAGATGTCACAGCTGTACGAGATCGTCGTCTTCACGGACAGCATGG
GGGGTTTGGCGGATGAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig90592:57..526-

>mRNA_Ecto-sp13_S_contig90592.20614.1 ID=mRNA_Ecto-sp13_S_contig90592.20614.1|Name=mRNA_Ecto-sp13_S_contig90592.20614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90592:57..526- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCGACGCTTGTGCTGGACCTTGAGGGAACCCTCCTCGGCACCATCTA
CACCCGTAAGAAAGGGTGGAGAGTTGCCAAGCGACCAGGCCTGGATGCGT
TCCTGAAGGAGATGTCACAGCTGTACGAGATCGTCGTCTTCACGGACAGC
ATGGGGGGTTTGGCGGATGAGGTG
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