mRNA_Ecto-sp13_S_contig905.20606.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: D7G973_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G973_ECTSI) HSP 1 Score: 228 bits (582), Expect = 1.950e-68 Identity = 115/142 (80.99%), Postives = 119/142 (83.80%), Query Frame = 1
Query: 115 SCFAPVFGTSALNMVLVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEKASHARLCPHATAASVEEREGGRPEHVEGAVCQRKLDAYSTKGSPHAPLPLRHHCLDGKT*RPE---CRRHMISTEAGR 531
S FA +F TSALNMVL+ESN LLE PSGFKCTWYGL HPVQF +LILMPALLY VNRLFD LEKASHA LCPHATAA VEE+EGGRPEHVEGAVCQRKLDA STKGSP APLPLRHH LDGK CRR MISTEAGR
Sbjct: 24 SRFALLFATSALNMVLLESNRLLEFPSGFKCTWYGLPHPVQFTILILMPALLYGVNRLFDRLEKASHAGLCPHATAACVEEKEGGRPEHVEGAVCQRKLDACSTKGSPRAPLPLRHHRLDGKEKAGASCMCRRDMISTEAGR 165
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: A0A6H5J7H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7H2_9PHAE) HSP 1 Score: 167 bits (422), Expect = 4.730e-45 Identity = 81/118 (68.64%), Postives = 92/118 (77.97%), Query Frame = 1
Query: 154 MVLVESNGLLELPSGFKCTWYGLSHPVQFAVLIL---------MPALLYRVNRLFDSLEKASHARLCPHATAASVEEREGGRPEHVEGAVCQRKLDAYSTKGSPHAPLPLRHHCLDGK 480
MVL+ES LL+ PSGFKCTWYGL HPVQFAVLIL MPALLY VNRLFD+LEKASH LCP+ TAA ++ REGGRPE+VEG +CQRKL A + KG+P APLPL HH L+GK
Sbjct: 1 MVLLESKSLLDFPSGFKCTWYGLPHPVQFAVLILALRSARAPQMPALLYGVNRLFDTLEKASHNYLCPYTTAAYMDAREGGRPEYVEGTLCQRKLVACANKGNPRAPLPLHHHRLEGK 118
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: D7G963_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G963_ECTSI) HSP 1 Score: 109 bits (272), Expect = 2.180e-25 Identity = 53/64 (82.81%), Postives = 54/64 (84.38%), Query Frame = 1
Query: 154 MVLVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEKASHARLCPHATAA 345
MVLVE+N LLE S FKCTWYGL HPVQF VLILMPALLY VNRLFD LEKASHARLCP A AA
Sbjct: 1 MVLVENNRLLEFSSRFKCTWYGLPHPVQFMVLILMPALLYGVNRLFDRLEKASHARLCPRAAAA 64
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: D7G956_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G956_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 1.630e-16 Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 160 LVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEKASHARLCPHATAASVEERE 363
+ ESN L++LPSGFKC WY LSHPVQFAVL++MPAL VNR+F L+KA++ARL +A E+R+
Sbjct: 8 VAESNMLVDLPSGFKCMWYNLSHPVQFAVLLVMPALFLGVNRMFGMLDKAAYARLSRAVSAWMNEKRQ 75
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: D7FU60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU60_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 7.870e-13 Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1
Query: 142 SALNMVLVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEKASHARLCPHATAASVEERE 363
SA+ + + ES L+E SGFKC WY L HPVQFAVL++MPAL + +NR+F L+KA++ARL TA E+R+
Sbjct: 145 SAMVVGVAESK-LVEFQSGFKCMWYDLPHPVQFAVLLMMPALFFGINRIFGKLDKAAYARLSRAVTAWMDEKRQ 217
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: A0A6H5J6F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6F6_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 8.460e-13 Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 142 SALNMVLVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEKASHARL 324
+A+ + L E L +LPSG KC WY LSHP Q+AVLI+ LY VNRLFD L+ A +ARL
Sbjct: 7 AAIKLGLAEGTLLFDLPSGLKCAWYSLSHPAQYAVLIMTLGCLYGVNRLFDKLDSAMNARL 67
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: A0A6H5KYN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN8_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 8.470e-13 Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 130 VFGTSALNMVLVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEKASHARLCPHATAASVEERE 363
V TSA+ + + ES L+E SGFKC WY L HPVQFAVL++MPAL + +N +F L+K ++ARL TA E+R+
Sbjct: 50 VLVTSAMVVGVAESK-LVEFRSGFKCIWYDLPHPVQFAVLLMMPALFFGINWIFGKLDKVAYARLSRAVTAWMDEKRQ 126
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: A0A6H5L9J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9J2_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 1.750e-12 Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 142 SALNMVLVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEKASHARL 324
+ALN LV+ + L++LPSGFKC WY L HP QFA+L LM ++Y +NRLF+ ++K +ARL
Sbjct: 132 AALNAGLVDGSLLVDLPSGFKCAWYNLEHPAQFAILFLMVGVVYFINRLFNEVDKVMYARL 192
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: D7G968_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G968_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 1.240e-11 Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 106 KRQSCFAPVFGTSALNMVLVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEKASHARL 324
+R+S SA+ + +VESN L+E PSG CTW L HP QFAV+ LM ALL+ V+++F L+ A++ARL
Sbjct: 18 RRRSHLLVATAMSAMIVGIVESNRLVEFPSGVMCTWNDLPHPAQFAVIFLMLALLFGVHQIFGKLDSAAYARL 90
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Match: A0A6H5L1U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U9_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 8.780e-11 Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 142 SALNMVLVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEKASHARLCPHATAASVEEREGGRPEH 381
+A+N VE N ++++PSG KC WY L+HP QFA+L+LM L+ VNRLF+ +K + RL AT A ++E R H
Sbjct: 147 AAINAGCVEGNVVVDMPSGLKCAWYNLTHPAQFAILLLMVGLVSFVNRLFNEADKVMYTRLS-RATDAWMDEMRHTRRGH 225 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig905.20606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig905.20606.1 >prot_Ecto-sp13_S_contig905.20606.1 ID=prot_Ecto-sp13_S_contig905.20606.1|Name=mRNA_Ecto-sp13_S_contig905.20606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp MVLVESNGLLELPSGFKCTWYGLSHPVQFAVLILMPALLYRVNRLFDSLEback to top mRNA from alignment at Ecto-sp13_S_contig905:8425..12936- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig905.20606.1 ID=mRNA_Ecto-sp13_S_contig905.20606.1|Name=mRNA_Ecto-sp13_S_contig905.20606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4512bp|location=Sequence derived from alignment at Ecto-sp13_S_contig905:8425..12936- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig905:8425..12936- >mRNA_Ecto-sp13_S_contig905.20606.1 ID=mRNA_Ecto-sp13_S_contig905.20606.1|Name=mRNA_Ecto-sp13_S_contig905.20606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig905:8425..12936- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |