mRNA_Ecto-sp13_S_contig9037.20595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9037.20595.1
Unique NamemRNA_Ecto-sp13_S_contig9037.20595.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9037.20595.1 vs. uniprot
Match: D7G9H7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H7_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 1.800e-143
Identity = 311/399 (77.94%), Postives = 315/399 (78.95%), Query Frame = 1 
Query:    1 RTDLDKLAQVVQLFPQISKRSLQNALTRAEGNIVLAVEFLLTRPGGDGSTPNAGSGGGDSRGDGGREAVEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR----KPRWGGGYAVSPFSAMAARGGNPALLRSGGVXXXXXXXXXXXXXXGDGSQATTPRASIDPPLDAEEGGDDVIEEEAVATTASYAAVPDLGVEETQQQVLEAGVARGGSAEGEPECAGGGIRAGEVGAAAXXXXXXXXXXXXXXXGTAGEMALPPPSAAAVRPMSA--PTGGMAGAFAWRRRSASLTDAAGKEAPKAHGVDDDDACSPSSQGSEAGSVRHSSSLPSNTRPRSPRGSFLSFSTREGSSVVMEEGGXXXXXXXXXXXCGFGRLAAANASFPIARTPPTSG 1179
            RTDLDKLAQVVQLFPQISKRSLQNALTRAEGNIVLAVEFLLTRPGGDGSTP+AGSGGGDSRGDGGREAVEVS XXXXXXXXXXXXXXXXXXXX              R    KPRWGGGY VSP+SAMAARGGNPALLRSGG       XXXXXXXX   SQATTPRASIDPPLDAEE           A+T              QQQVLE GVARGGSAEGEPECAGGGIRAGEVGAAAXXXXXXXXXXXXXX G AGE A  PPSAAAVR MSA  PTGGMAGAFAWRRRSASLT AA  EAPKAHGVDDDDACSPSSQGS +GSVR  SSLPS  R RSPRGSFLSFSTREGSSVVMEEGG           CGFGRLAAANASFPIARTPPTSG
Sbjct:  234 RTDLDKLAQVVQLFPQISKRSLQNALTRAEGNIVLAVEFLLTRPGGDGSTPDAGSGGGDSRGDGGREAVEVSSXXXXXXXXXXXXXXXXXXXXDGACRGGGEEAGRGRTAARKPRWGGGYVVSPYSAMAARGGNPALLRSGGFLQGGGLXXXXXXXXXXXSQATTPRASIDPPLDAEEXXXXXXXXXXXAST--------------QQQVLETGVARGGSAEGEPECAGGGIRAGEVGAAAXXXXXXXXXXXXXXAGAAGETAPRPPSAAAVRTMSARVPTGGMAGAFAWRRRSASLTAAADNEAPKAHGVDDDDACSPSSQGSGSGSVRQYSSLPSYGRSRSPRGSFLSFSTREGSSVVMEEGGGDGSGSCGSSGCGFGRLAAANASFPIARTPPTSG 618
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BLAST of mRNA_Ecto-sp13_S_contig9037.20595.1 vs. uniprot
Match: A0A6H5JXK0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK0_9PHAE)

HSP 1 Score: 421 bits (1081), Expect = 5.700e-138
Identity = 338/431 (78.42%), Postives = 344/431 (79.81%), Query Frame = 1 
Query:    1 RTDLDKLAQVVQLFPQISKRSLQNALTRAEGNIVLAVEFLLTRPGGDGSTPNAGSGGGDSRGDGGREAVEVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKPRWGGGYAVSPFSAMAARGGNPALLRSGGVXXXXXXXXXXXXXXGD--GSQATTPRASIDPPLDAEEGGDDVIEEEAVATTASYAAVPDLGVEETQQQVLEAGVARGGSAEGEPECAGGGIRAGEVGAAAXXXXXXXXXXXXXXXGTAGEMALPP----PSAAAVRPMSAPTGGMAGAFAWRRRSASLTDAAGKEAPKAHGVDDDDACSPSSQGSEAGSVRHSSSLPSNTRPRSPRGSFLSFSTREGSSVVMEEGGXXXXXXXXXXXCGFGRLAAANASFPIARTPPTSGXXXXXXXXXXXXXXXXXXXXXXCMCLGLDSAV 1275
            RTDLDKLAQVVQLFPQISKRSLQNALTRA GNIVLAVE LLTRPGGDGSTP+AG GGGDSRGDGGREAVEVSXXXXXXXXXXXXXXXXXXXXXXXXXX         R PRWGGGY VSP+SAMAARGGNPALLRSGG    XXXXXXXXXXX    GSQATTPRASIDP LDAEEGG D +EEE V              E TQQQVL AGVARGGSAEGEPECAGGGIR GE GAAAXXXXXXXXXXXXXXX              PSAAAVRPMSAPTGGMAGAFAWRRRSASLT AAGK+APKAHGVDDDDACSPSSQGS AGSV+H+SSLPS  R  S RGSFLSFS REG SVVMEEGG           CGFGRLAAANASFPIARTPPTSG      XXXXXXXXXXXXXX  CMCLGLDS V
Sbjct:  314 RTDLDKLAQVVQLFPQISKRSLQNALTRAGGNIVLAVEILLTRPGGDGSTPDAGIGGGDSRGDGGREAVEVSXXXXXXXXXXXXXXXXXXXXXXXXXXEETAA----RNPRWGGGYMVSPYSAMAARGGNPALLRSGGFLQGXXXXXXXXXXXXXVYGSQATTPRASIDPSLDAEEGGGDAMEEEPV--------------EVTQQQVLGAGVARGGSAEGEPECAGGGIRVGEFGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSAAAVRPMSAPTGGMAGAFAWRRRSASLTAAAGKDAPKAHGVDDDDACSPSSQGSGAGSVQHNSSLPSYARSHSQRGSFLSFSAREGPSVVMEEGGGGSSSG-----CGFGRLAAANASFPIARTPPTSGSGARGMXXXXXXXXXXXXXXD-CMCLGLDSTV 720
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9037.20595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9H7_ECTSI1.800e-14377.94RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JXK0_9PHAE5.700e-13878.42RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9037contigEcto-sp13_S_contig9037:106..1383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score437.2
Seed ortholog evalue8.9e-120
Seed eggNOG ortholog2880.D7G9H7
Model size1278
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-28_000960.1
Cds size1278
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464176.8991559-CDS-Ecto-sp13_S_contig9037:105..13831681464176.8991559-CDS-Ecto-sp13_S_contig9037:105..1383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9037 106..1383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9037.20595.1prot_Ecto-sp13_S_contig9037.20595.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9037 106..1383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9037.20595.1

>prot_Ecto-sp13_S_contig9037.20595.1 ID=prot_Ecto-sp13_S_contig9037.20595.1|Name=mRNA_Ecto-sp13_S_contig9037.20595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=426bp
RTDLDKLAQVVQLFPQISKRSLQNALTRAEGNIVLAVEFLLTRPGGDGST
PNAGSGGGDSRGDGGREAVEVSSSAATAAATERDDDDDDDDDDDDDGACR
GGGETAARKPRWGGGYAVSPFSAMAARGGNPALLRSGGVLRGGGLGRRGG
GGDGDGSQATTPRASIDPPLDAEEGGDDVIEEEAVATTASYAAVPDLGVE
ETQQQVLEAGVARGGSAEGEPECAGGGIRAGEVGAAAGAAAAAVAAAVVA
AAGTAGEMALPPPSAAAVRPMSAPTGGMAGAFAWRRRSASLTDAAGKEAP
KAHGVDDDDACSPSSQGSEAGSVRHSSSLPSNTRPRSPRGSFLSFSTREG
SSVVMEEGGGGSGSGGGSSGCGFGRLAAANASFPIARTPPTSGSGARGMA
VAAAAAAVVGDGQGDCMCLGLDSAV*
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mRNA from alignment at Ecto-sp13_S_contig9037:106..1383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9037.20595.1 ID=mRNA_Ecto-sp13_S_contig9037.20595.1|Name=mRNA_Ecto-sp13_S_contig9037.20595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9037:106..1383+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAACCGACCTGGACAAACTAGCCCAGGTAGTTCAGCTCTTCCCCCAGAT
CAGCAAGCGATCCCTGCAGAACGCTCTCACTCGTGCAGAGGGAAACATCG
TGCTTGCCGTCGAGTTCCTCCTGACTCGGCCCGGCGGAGACGGCAGCACG
CCCAACGCAGGAAGCGGCGGGGGCGACTCGAGAGGTGACGGCGGTCGAGA
AGCCGTCGAGGTCTCCTCCTCCGCAGCAACGGCGGCGGCGACAGAGCGCG
ATGATGATGATGATGATGATGATGATGACGATGATGACGGTGCGTGCCGA
GGAGGAGGAGAAACAGCGGCAAGGAAGCCTCGGTGGGGCGGCGGCTACGC
CGTTAGCCCCTTCTCCGCCATGGCGGCGCGCGGCGGCAATCCGGCGTTGC
TGCGATCCGGGGGGGTTCTACGAGGAGGAGGCCTTGGCCGCCGGGGCGGG
GGCGGGGACGGGGACGGCAGCCAGGCCACGACCCCGCGAGCCTCGATCGA
TCCCCCGCTTGACGCAGAAGAGGGCGGCGACGATGTCATAGAGGAGGAGG
CGGTGGCTACTACTGCTTCTTATGCAGCTGTGCCGGACTTGGGCGTGGAA
GAGACTCAGCAGCAGGTGTTGGAGGCGGGTGTAGCTCGGGGGGGCAGCGC
GGAGGGAGAACCCGAGTGCGCCGGCGGTGGGATTCGAGCGGGGGAGGTCG
GAGCGGCGGCGGGGGCGGCGGCGGCGGCCGTTGCAGCGGCGGTAGTGGCG
GCGGCGGGAACGGCCGGCGAAATGGCGCTACCGCCTCCGTCGGCGGCAGC
GGTGAGGCCTATGTCCGCGCCCACCGGGGGTATGGCCGGAGCTTTCGCGT
GGCGGCGAAGGTCGGCGTCCTTGACGGATGCTGCAGGTAAGGAGGCTCCA
AAGGCTCATGGGGTGGACGATGACGATGCCTGTAGTCCGTCGTCTCAAGG
CTCGGAGGCGGGGTCTGTCCGACATAGTAGCTCCCTTCCTTCGAACACGC
GTCCCCGAAGCCCTCGAGGGTCTTTCTTGTCCTTTTCCACTCGGGAAGGC
TCCTCGGTGGTGATGGAGGAGGGCGGCGGCGGCAGCGGCAGCGGCGGCGG
CAGCAGCGGGTGCGGGTTTGGCCGCCTCGCGGCGGCGAACGCCTCGTTTC
CGATCGCGCGGACGCCGCCGACGTCAGGAAGCGGCGCGCGCGGGATGGCG
GTGGCGGCGGCAGCGGCTGCAGTCGTGGGCGACGGCCAAGGGGACTGCAT
GTGCCTGGGCCTAGACTCTGCCGTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9037:106..1383+

>mRNA_Ecto-sp13_S_contig9037.20595.1 ID=mRNA_Ecto-sp13_S_contig9037.20595.1|Name=mRNA_Ecto-sp13_S_contig9037.20595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9037:106..1383+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAACCGACCTGGACAAACTAGCCCAGGTAGTTCAGCTCTTCCCCCAGAT
CAGCAAGCGATCCCTGCAGAACGCTCTCACTCGTGCAGAGGGAAACATCG
TGCTTGCCGTCGAGTTCCTCCTGACTCGGCCCGGCGGAGACGGCAGCACG
CCCAACGCAGGAAGCGGCGGGGGCGACTCGAGAGGTGACGGCGGTCGAGA
AGCCGTCGAGGTCTCCTCCTCCGCAGCAACGGCGGCGGCGACAGAGCGCG
ATGATGATGATGATGATGATGATGATGACGATGATGACGGTGCGTGCCGA
GGAGGAGGAGAAACAGCGGCAAGGAAGCCTCGGTGGGGCGGCGGCTACGC
CGTTAGCCCCTTCTCCGCCATGGCGGCGCGCGGCGGCAATCCGGCGTTGC
TGCGATCCGGGGGGGTTCTACGAGGAGGAGGCCTTGGCCGCCGGGGCGGG
GGCGGGGACGGGGACGGCAGCCAGGCCACGACCCCGCGAGCCTCGATCGA
TCCCCCGCTTGACGCAGAAGAGGGCGGCGACGATGTCATAGAGGAGGAGG
CGGTGGCTACTACTGCTTCTTATGCAGCTGTGCCGGACTTGGGCGTGGAA
GAGACTCAGCAGCAGGTGTTGGAGGCGGGTGTAGCTCGGGGGGGCAGCGC
GGAGGGAGAACCCGAGTGCGCCGGCGGTGGGATTCGAGCGGGGGAGGTCG
GAGCGGCGGCGGGGGCGGCGGCGGCGGCCGTTGCAGCGGCGGTAGTGGCG
GCGGCGGGAACGGCCGGCGAAATGGCGCTACCGCCTCCGTCGGCGGCAGC
GGTGAGGCCTATGTCCGCGCCCACCGGGGGTATGGCCGGAGCTTTCGCGT
GGCGGCGAAGGTCGGCGTCCTTGACGGATGCTGCAGGTAAGGAGGCTCCA
AAGGCTCATGGGGTGGACGATGACGATGCCTGTAGTCCGTCGTCTCAAGG
CTCGGAGGCGGGGTCTGTCCGACATAGTAGCTCCCTTCCTTCGAACACGC
GTCCCCGAAGCCCTCGAGGGTCTTTCTTGTCCTTTTCCACTCGGGAAGGC
TCCTCGGTGGTGATGGAGGAGGGCGGCGGCGGCAGCGGCAGCGGCGGCGG
CAGCAGCGGGTGCGGGTTTGGCCGCCTCGCGGCGGCGAACGCCTCGTTTC
CGATCGCGCGGACGCCGCCGACGTCAGGAAGCGGCGCGCGCGGGATGGCG
GTGGCGGCGGCAGCGGCTGCAGTCGTGGGCGACGGCCAAGGGGACTGCAT
GTGCCTGGGCCTAGACTCTGCCGTTTAG
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