mRNA_Ecto-sp13_S_contig9021.20578.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9021.20578.1
Unique NamemRNA_Ecto-sp13_S_contig9021.20578.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9021.20578.1 vs. uniprot
Match: A0A6H5JRE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE1_9PHAE)

HSP 1 Score: 416 bits (1070), Expect = 1.210e-145
Identity = 219/257 (85.21%), Postives = 227/257 (88.33%), Query Frame = 1 
Query:    1 MLAYAAKAVLGEKRFEASEAAVEWTGARDASGRAFWFNGVTHEATLEDPSKDGSYAASSSLSLPSQLQQRQSASPVAVTPFRSGCRTPGDGCVTPAECGRVTPPFYGCTAPPADDHPISGYASXXXXXXXXXXVMTPPHVRGYFSPGTGGVSPPYGYRCNQQLPPXXXXXHQHAYPVENQSPCFAAGQAWKALPRQPRRARXXXXSDASVPXXXXXXXXXXXXXXGYRWDECYKETDGKKFWRHKETGVIITEDPYH 771
            MLAYAAKAVLGEKRFEASEAAVEWTGARD SGR+FW+NGVTHEATLEDPSK+GSYA  SSLSLPSQL QRQSASPVAVTPFRSGCRT  D CVTPAECGRVTPPFYGCTAPPADD PISGYASXXXXXXXXXXVMTPPHVRGYFSPGTGGVSPP GYRC+QQLPP     HQHAYPV+NQS CFAAGQAW+ LPRQPRRARXXXXS++SVP              GYRWDECYKETDGKKFWRHKETGVIITEDPYH
Sbjct:    1 MLAYAAKAVLGEKRFEASEAAVEWTGARDGSGRSFWYNGVTHEATLEDPSKNGSYAPPSSLSLPSQLLQRQSASPVAVTPFRSGCRTQADACVTPAECGRVTPPFYGCTAPPADDRPISGYASXXXXXXXXXXVMTPPHVRGYFSPGTGGVSPPCGYRCDQQLPPPP---HQHAYPVQNQSSCFAAGQAWETLPRQPRRARXXXXSNSSVPPSAATAGGDGSGSGGYRWDECYKETDGKKFWRHKETGVIITEDPYH 254
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BLAST of mRNA_Ecto-sp13_S_contig9021.20578.1 vs. uniprot
Match: D8LFW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW6_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 7.740e-127
Identity = 219/259 (84.56%), Postives = 229/259 (88.42%), Query Frame = 1 
Query:    1 MLAYAAKAVLGEKRFEASEAAVEWTGARDASGRAFWFNGVTHEATLEDPSKDGSYAASSSLSLPSQLQQRQSASPVAVTPFRSGCRTPGDGCVTPAECGRVTPPFYGCTAPPA-DDHPISGYASXXXXXXXXXXVMTPPHVRGYFSPGTGGVSPPYGYRCNQQLPPXXXXX-HQHAYPVENQSPCFAAGQAWKALPRQPRRARXXXXSDASVPXXXXXXXXXXXXXXGYRWDECYKETDGKKFWRHKETGVIITEDPYH 771
            MLAYAAKAVLGEKRFEASEAAVEWTGARD SGRAFW+NGVTHEATLEDPSKDGSYA+ SSLSLPSQLQQRQSASPVAVTPFRSGCRTPGDGCVTPAECGRVTPPFYGCTAPPA +D+PISGYA XXXXXXXXXX             GTGGVSPPYG+R +Q    XXXX   Q+AYPVENQSPCFAAGQAW+++P QPRRAR  XX DASV XXXXXXXXXXXXXXGYRWDECYKETDGKKFWRHKETGVIITEDPYH
Sbjct:    1 MLAYAAKAVLGEKRFEASEAAVEWTGARDGSGRAFWYNGVTHEATLEDPSKDGSYASPSSLSLPSQLQQRQSASPVAVTPFRSGCRTPGDGCVTPAECGRVTPPFYGCTAPPAAEDYPISGYAXXXXXXXXXXXXXXXXXXXXXXXXGTGGVSPPYGHRRDQXXXXXXXXLPDQNAYPVENQSPCFAAGQAWESVPHQPRRARRQXXXDASVXXXXXXXXXXXXXXXGYRWDECYKETDGKKFWRHKETGVIITEDPYH 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9021.20578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRE1_9PHAE1.210e-14585.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFW6_ECTSI7.740e-12784.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9021contigEcto-sp13_S_contig9021:527..1612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size774
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005260.1
Cds size774
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464175.7109997-CDS-Ecto-sp13_S_contig9021:526..11931681464175.7109997-CDS-Ecto-sp13_S_contig9021:526..1193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9021 527..1193 -
1681464175.721072-CDS-Ecto-sp13_S_contig9021:1505..16121681464175.721072-CDS-Ecto-sp13_S_contig9021:1505..1612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9021 1506..1612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9021.20578.1prot_Ecto-sp13_S_contig9021.20578.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9021 527..1612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9021.20578.1

>prot_Ecto-sp13_S_contig9021.20578.1 ID=prot_Ecto-sp13_S_contig9021.20578.1|Name=mRNA_Ecto-sp13_S_contig9021.20578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
MLAYAAKAVLGEKRFEASEAAVEWTGARDASGRAFWFNGVTHEATLEDPS
KDGSYAASSSLSLPSQLQQRQSASPVAVTPFRSGCRTPGDGCVTPAECGR
VTPPFYGCTAPPADDHPISGYASPPYNGYVSPPVMTPPHVRGYFSPGTGG
VSPPYGYRCNQQLPPPPPPPHQHAYPVENQSPCFAAGQAWKALPRQPRRA
RRQRRSDASVPPSAATAGGGGSGGGGYRWDECYKETDGKKFWRHKETGVI
ITEDPYH*
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mRNA from alignment at Ecto-sp13_S_contig9021:527..1612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9021.20578.1 ID=mRNA_Ecto-sp13_S_contig9021.20578.1|Name=mRNA_Ecto-sp13_S_contig9021.20578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9021:527..1612- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCCTATGCAGCGAAAGCTGTGCTGGGAGAGAAACGCTTCGAGGC
GTCGGAAGCGGCCGTTGAATGGACGGGTGCCCGTGACGCTAGTGGTCGTG
CGTTCTGGTGAGGACACGTAGCTTAAAGCTGCTCAACATAGGTTGTGCAT
CGCAGGATCGTCTCTGCTGGGCTGCAGCCACGTATTTTGAGGTGCAGCCG
ACGGCCACCAAGCCACATGTTTTCGCACTTTGTCGCAACAAGTCACTCAC
CCTTTCTCGCTCGTCATCCCCGGCCGCTCTGAATTCCAGACACACCCAGA
GTATTCCGTCGTGCCGCAAGCTGGCCATCTTGATTGCAGTCCACCACAGT
GTGTGCGAGCCACGAGAAAAAACAACTCCCAACGCCAAAGCATCCCACTC
GTTCCTTCCTTTAAAGCAGGTTCAACGGGGTAACACACGAAGCCACGCTG
GAAGACCCCAGCAAAGACGGGAGCTACGCCGCGTCATCGTCGTTGTCACT
GCCGTCGCAGCTGCAGCAGCGGCAATCCGCATCGCCCGTGGCGGTGACGC
CGTTCCGGAGCGGGTGCAGGACCCCGGGCGACGGGTGCGTGACGCCGGCG
GAATGCGGCCGCGTGACGCCTCCGTTCTACGGCTGCACAGCCCCGCCGGC
CGACGACCACCCCATCAGTGGCTACGCGTCGCCGCCCTACAACGGCTACG
TGTCGCCCCCAGTCATGACGCCGCCCCACGTGCGCGGGTACTTCTCTCCC
GGCACCGGCGGCGTGTCGCCCCCGTACGGGTACCGGTGCAACCAGCAGCT
GCCGCCGCCGCCGCCGCCGCCGCATCAACACGCCTACCCGGTGGAGAACC
AGTCCCCGTGCTTCGCCGCGGGGCAAGCGTGGAAAGCACTGCCACGCCAG
CCGCGTCGCGCTCGGCGGCAGAGGCGGAGTGACGCCTCTGTTCCGCCATC
CGCGGCCACTGCCGGCGGCGGTGGCAGCGGCGGCGGCGGCTACCGGTGGG
ACGAGTGCTACAAGGAAACCGATGGGAAGAAGTTCTGGCGCCACAAAGAG
ACGGGAGTTATCATCACAGAAGACCCCTACCACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9021:527..1612-

>mRNA_Ecto-sp13_S_contig9021.20578.1 ID=mRNA_Ecto-sp13_S_contig9021.20578.1|Name=mRNA_Ecto-sp13_S_contig9021.20578.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9021:527..1612- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCCTATGCAGCGAAAGCTGTGCTGGGAGAGAAACGCTTCGAGGC
GTCGGAAGCGGCCGTTGAATGGACGGGTGCCCGTGACGCTAGTGGTCGTG
CGTTCTGGTTCAACGGGGTAACACACGAAGCCACGCTGGAAGACCCCAGC
AAAGACGGGAGCTACGCCGCGTCATCGTCGTTGTCACTGCCGTCGCAGCT
GCAGCAGCGGCAATCCGCATCGCCCGTGGCGGTGACGCCGTTCCGGAGCG
GGTGCAGGACCCCGGGCGACGGGTGCGTGACGCCGGCGGAATGCGGCCGC
GTGACGCCTCCGTTCTACGGCTGCACAGCCCCGCCGGCCGACGACCACCC
CATCAGTGGCTACGCGTCGCCGCCCTACAACGGCTACGTGTCGCCCCCAG
TCATGACGCCGCCCCACGTGCGCGGGTACTTCTCTCCCGGCACCGGCGGC
GTGTCGCCCCCGTACGGGTACCGGTGCAACCAGCAGCTGCCGCCGCCGCC
GCCGCCGCCGCATCAACACGCCTACCCGGTGGAGAACCAGTCCCCGTGCT
TCGCCGCGGGGCAAGCGTGGAAAGCACTGCCACGCCAGCCGCGTCGCGCT
CGGCGGCAGAGGCGGAGTGACGCCTCTGTTCCGCCATCCGCGGCCACTGC
CGGCGGCGGTGGCAGCGGCGGCGGCGGCTACCGGTGGGACGAGTGCTACA
AGGAAACCGATGGGAAGAAGTTCTGGCGCCACAAAGAGACGGGAGTTATC
ATCACAGAAGACCCCTACCACTAA
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