mRNA_Ecto-sp13_S_contig90083.20561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig90083.20561.1
Unique NamemRNA_Ecto-sp13_S_contig90083.20561.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig90083.20561.1 vs. uniprot
Match: D7G483_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G483_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 4.610e-9
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:   31 RGESALQLAMSRRNVEVVDLLVNHPNIRL 117
            RGESALQLAMSRRNVEVVDLLVNHPNIRL
Sbjct:  550 RGESALQLAMSRRNVEVVDLLVNHPNIRL 578
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig90083.20561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G483_ECTSI4.610e-9100.00Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig90083contigEcto-sp13_S_contig90083:312..428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464174.321215-CDS-Ecto-sp13_S_contig90083:311..4281681464174.321215-CDS-Ecto-sp13_S_contig90083:311..428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig90083 312..428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig90083.20561.1prot_Ecto-sp13_S_contig90083.20561.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig90083 312..428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig90083.20561.1

>prot_Ecto-sp13_S_contig90083.20561.1 ID=prot_Ecto-sp13_S_contig90083.20561.1|Name=mRNA_Ecto-sp13_S_contig90083.20561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
SPVRLGLLCTRGESALQLAMSRRNVEVVDLLVNHPNIRL
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mRNA from alignment at Ecto-sp13_S_contig90083:312..428-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig90083.20561.1 ID=mRNA_Ecto-sp13_S_contig90083.20561.1|Name=mRNA_Ecto-sp13_S_contig90083.20561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90083:312..428- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCGGTGCGGTTGGGTCTTTTGTGTACAAGGGGGGAGTCGGCGCTGCA
GCTGGCCATGTCGAGGAGGAACGTGGAGGTGGTGGACTTGCTCGTCAATC
ACCCGAACATACGTCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig90083:312..428-

>mRNA_Ecto-sp13_S_contig90083.20561.1 ID=mRNA_Ecto-sp13_S_contig90083.20561.1|Name=mRNA_Ecto-sp13_S_contig90083.20561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig90083:312..428- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCCGGTGCGGTTGGGTCTTTTGTGTACAAGGGGGGAGTCGGCGCTGCA
GCTGGCCATGTCGAGGAGGAACGTGGAGGTGGTGGACTTGCTCGTCAATC
ACCCGAACATACGTCTC
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