mRNA_Ecto-sp13_S_contig9003.20557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE) HSP 1 Score: 134 bits (337), Expect = 5.010e-36 Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1
Query: 1 CKLPPG-SGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPH 264
CK P SGP ACGDPHMTGF GQ+FDFTGED G+YA++SD PN+H++MRVTSPVPS+PEITYITG+S+ TTDAN H+I+I V NPH
Sbjct: 76 CKDPTETSGPRACGDPHMTGFLGQKFDFTGEDGGYYALISDFPNMHMNMRVTSPVPSLPEITYITGLSLLTTDANGEVHSIVIEVKNPH 164
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE) HSP 1 Score: 129 bits (323), Expect = 6.420e-34 Identity = 56/89 (62.92%), Postives = 75/89 (84.27%), Query Frame = 1
Query: 1 CKLPPGSGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
C+LP + P ACGDPHMTGF GQ+FDFTG+D WY ++SDLP+++L+MRVT+PVPS P+ITYITGIS+ T D N +DH+++I+V +PHS
Sbjct: 44 CELPLPTDPTACGDPHMTGFHGQKFDFTGDDGEWYCLISDLPSMNLNMRVTAPVPSRPDITYITGISLITQDGNGLDHSVVITVKDPHS 132
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.400e-31 Identity = 52/80 (65.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query: 28 GACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
GACGDPHMTGF GQ+FDF G+D WYA++SD+P++ ++MRVTSPVP+ PEITYITG+ IKT D +DH+++I+VT+PHS
Sbjct: 136 GACGDPHMTGFLGQKFDFVGQDGEWYAVVSDMPDLEVNMRVTSPVPAEPEITYITGLGIKTRDIEGLDHSLVITVTDPHS 215
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE) HSP 1 Score: 118 bits (296), Expect = 5.540e-31 Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 1
Query: 49 MTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
MTGFRGQ+FDFTG+D GWY++ SD+P IHL+MR S VPSVPEITYITG+ I TTDAN +DHTI+I+VT+PHS
Sbjct: 1 MTGFRGQKFDFTGQDGGWYSVHSDMPRIHLNMRARSLVPSVPEITYITGLGITTTDANGLDHTIVITVTDPHS 73
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.560e-30 Identity = 54/89 (60.67%), Postives = 72/89 (80.90%), Query Frame = 1
Query: 1 CKLPPGSGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
C++ + P ACGDPHMTGF GQ+FDFTG D WY ++SDLP++HL+MRVTSPV S P+ITYITG+S+ TTD + +H+I+ISV +P+S
Sbjct: 768 CEVADPTDPTACGDPHMTGFHGQKFDFTGNDGQWYCLISDLPSMHLNMRVTSPVSSRPDITYITGLSLITTDGDGQEHSIIISVKDPYS 856
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE) HSP 1 Score: 118 bits (296), Expect = 4.170e-29 Identity = 53/89 (59.55%), Postives = 71/89 (79.78%), Query Frame = 1
Query: 1 CKLPPGSGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
C++P + P A GDPHMTGF GQ+FDFTG D WY ++SDLP++HL+MRVT+PV S P+ITYITG+S+ TTD +H+I+ISV +PH+
Sbjct: 586 CEVPILTDPTAGGDPHMTGFHGQKFDFTGNDGQWYCLISDLPSMHLNMRVTAPVSSRPDITYITGLSLITTDGGGQEHSIIISVKDPHN 674
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE) HSP 1 Score: 112 bits (280), Expect = 5.290e-27 Identity = 48/78 (61.54%), Postives = 67/78 (85.90%), Query Frame = 1
Query: 34 CGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
CGDPHMTGF GQ+FDFTGED GWY++++D N++++MRVTSPV +PEITYITG+S+ TTD + ++H+I+I V +PH+
Sbjct: 317 CGDPHMTGFLGQKFDFTGEDGGWYSVIAD-SNMNVNMRVTSPVADLPEITYITGLSVLTTDTDGLEHSIVIEVIDPHN 393
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 1.380e-16 Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query: 37 GDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEI-------TYITGI-----SIKTTDANNVDHTILISVTNPHS 267
G PHMTGF GQ+FDFTGED GWY+I++D N++++MRVTSP + P Y + + S+ TTDA+ DH+I+I V PHS
Sbjct: 9 GGPHMTGFLGQKFDFTGEDGGWYSIIAD-SNMNVNMRVTSPSSTCPRSPTSQRLGAYSSAVLERRLSVLTTDADGSDHSIVIEVAEPHS 96
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: D7G9C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C8_ECTSI) HSP 1 Score: 74.3 bits (181), Expect = 1.730e-15 Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query: 1 CKLPPGSGPGA--CGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHM 144
C+ P P A CGDPHMTGF GQ+FDFTGED G+YA++SD PN+H++M
Sbjct: 23 CRNPDPGAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 72
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI) HSP 1 Score: 66.6 bits (161), Expect = 7.220e-11 Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query: 40 DPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSV-PEITYITGISIKTTDANNVDHTILISVTNP 261
DPH+TG RGQ FD+ G+D GWYA LS + +++RVTS +P+ PE +TG+++ T HTI + +P
Sbjct: 245 DPHLTGLRGQHFDWYGQDGGWYAFLSTPDQLQMNLRVTSHLPATFPERQLVTGVALVTEGG----HTITADIVDP 315 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9003.20557.1 >prot_Ecto-sp13_S_contig9003.20557.1 ID=prot_Ecto-sp13_S_contig9003.20557.1|Name=mRNA_Ecto-sp13_S_contig9003.20557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp CKLPPGSGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVback to top mRNA from alignment at Ecto-sp13_S_contig9003:1547..2180- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9003.20557.1 ID=mRNA_Ecto-sp13_S_contig9003.20557.1|Name=mRNA_Ecto-sp13_S_contig9003.20557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=634bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9003:1547..2180- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9003:1547..2180- >mRNA_Ecto-sp13_S_contig9003.20557.1 ID=mRNA_Ecto-sp13_S_contig9003.20557.1|Name=mRNA_Ecto-sp13_S_contig9003.20557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9003:1547..2180- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |