mRNA_Ecto-sp13_S_contig9003.20557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9003.20557.1
Unique NamemRNA_Ecto-sp13_S_contig9003.20557.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.010e-36
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    1 CKLPPG-SGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPH 264
            CK P   SGP ACGDPHMTGF GQ+FDFTGED G+YA++SD PN+H++MRVTSPVPS+PEITYITG+S+ TTDAN   H+I+I V NPH
Sbjct:   76 CKDPTETSGPRACGDPHMTGFLGQKFDFTGEDGGYYALISDFPNMHMNMRVTSPVPSLPEITYITGLSLLTTDANGEVHSIVIEVKNPH 164          
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 6.420e-34
Identity = 56/89 (62.92%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    1 CKLPPGSGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
            C+LP  + P ACGDPHMTGF GQ+FDFTG+D  WY ++SDLP+++L+MRVT+PVPS P+ITYITGIS+ T D N +DH+++I+V +PHS
Sbjct:   44 CELPLPTDPTACGDPHMTGFHGQKFDFTGDDGEWYCLISDLPSMNLNMRVTAPVPSRPDITYITGISLITQDGNGLDHSVVITVKDPHS 132          
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.400e-31
Identity = 52/80 (65.00%), Postives = 69/80 (86.25%), Query Frame = 1
Query:   28 GACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
            GACGDPHMTGF GQ+FDF G+D  WYA++SD+P++ ++MRVTSPVP+ PEITYITG+ IKT D   +DH+++I+VT+PHS
Sbjct:  136 GACGDPHMTGFLGQKFDFVGQDGEWYAVVSDMPDLEVNMRVTSPVPAEPEITYITGLGIKTRDIEGLDHSLVITVTDPHS 215          
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.540e-31
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 1
Query:   49 MTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
            MTGFRGQ+FDFTG+D GWY++ SD+P IHL+MR  S VPSVPEITYITG+ I TTDAN +DHTI+I+VT+PHS
Sbjct:    1 MTGFRGQKFDFTGQDGGWYSVHSDMPRIHLNMRARSLVPSVPEITYITGLGITTTDANGLDHTIVITVTDPHS 73          
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.560e-30
Identity = 54/89 (60.67%), Postives = 72/89 (80.90%), Query Frame = 1
Query:    1 CKLPPGSGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
            C++   + P ACGDPHMTGF GQ+FDFTG D  WY ++SDLP++HL+MRVTSPV S P+ITYITG+S+ TTD +  +H+I+ISV +P+S
Sbjct:  768 CEVADPTDPTACGDPHMTGFHGQKFDFTGNDGQWYCLISDLPSMHLNMRVTSPVSSRPDITYITGLSLITTDGDGQEHSIIISVKDPYS 856          
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 4.170e-29
Identity = 53/89 (59.55%), Postives = 71/89 (79.78%), Query Frame = 1
Query:    1 CKLPPGSGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
            C++P  + P A GDPHMTGF GQ+FDFTG D  WY ++SDLP++HL+MRVT+PV S P+ITYITG+S+ TTD    +H+I+ISV +PH+
Sbjct:  586 CEVPILTDPTAGGDPHMTGFHGQKFDFTGNDGQWYCLISDLPSMHLNMRVTAPVSSRPDITYITGLSLITTDGGGQEHSIIISVKDPHN 674          
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5KVF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 5.290e-27
Identity = 48/78 (61.54%), Postives = 67/78 (85.90%), Query Frame = 1
Query:   34 CGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS 267
            CGDPHMTGF GQ+FDFTGED GWY++++D  N++++MRVTSPV  +PEITYITG+S+ TTD + ++H+I+I V +PH+
Sbjct:  317 CGDPHMTGFLGQKFDFTGEDGGWYSVIAD-SNMNVNMRVTSPVADLPEITYITGLSVLTTDTDGLEHSIVIEVIDPHN 393          
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.380e-16
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:   37 GDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSVPEI-------TYITGI-----SIKTTDANNVDHTILISVTNPHS 267
            G PHMTGF GQ+FDFTGED GWY+I++D  N++++MRVTSP  + P          Y + +     S+ TTDA+  DH+I+I V  PHS
Sbjct:    9 GGPHMTGFLGQKFDFTGEDGGWYSIIAD-SNMNVNMRVTSPSSTCPRSPTSQRLGAYSSAVLERRLSVLTTDADGSDHSIVIEVAEPHS 96          
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: D7G9C8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C8_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.730e-15
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 CKLPPGSGPGA--CGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHM 144
            C+ P    P A  CGDPHMTGF GQ+FDFTGED G+YA++SD PN+H++M
Sbjct:   23 CRNPDPGAPAARACGDPHMTGFLGQKFDFTGEDGGYYAVISDFPNLHMNM 72          
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 7.220e-11
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   40 DPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRVTSPVPSV-PEITYITGISIKTTDANNVDHTILISVTNP 261
            DPH+TG RGQ FD+ G+D GWYA LS    + +++RVTS +P+  PE   +TG+++ T       HTI   + +P
Sbjct:  245 DPHLTGLRGQHFDWYGQDGGWYAFLSTPDQLQMNLRVTSHLPATFPERQLVTGVALVTEGG----HTITADIVDP 315          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9003.20557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JW46_9PHAE5.010e-3670.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRS2_9PHAE6.420e-3462.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE1.400e-3165.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W0_9PHAE5.540e-3172.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE2.560e-3060.67LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE4.170e-2959.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF3_9PHAE5.290e-2761.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5Y7_9PHAE1.380e-1648.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9C8_ECTSI1.730e-1562.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G544_ECTSI7.220e-1142.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9003contigEcto-sp13_S_contig9003:1547..2180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size268
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionLeucine-rich repeat
Ec32 orthologEc-22_002180.3
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464174.0573373-CDS-Ecto-sp13_S_contig9003:1546..17761681464174.0573373-CDS-Ecto-sp13_S_contig9003:1546..1776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9003 1547..1776 -
1681464174.067223-CDS-Ecto-sp13_S_contig9003:2143..21801681464174.067223-CDS-Ecto-sp13_S_contig9003:2143..2180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9003 2144..2180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9003.20557.1prot_Ecto-sp13_S_contig9003.20557.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9003 1547..2180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9003.20557.1

>prot_Ecto-sp13_S_contig9003.20557.1 ID=prot_Ecto-sp13_S_contig9003.20557.1|Name=mRNA_Ecto-sp13_S_contig9003.20557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
CKLPPGSGPGACGDPHMTGFRGQRFDFTGEDDGWYAILSDLPNIHLHMRV
TSPVPSVPEITYITGISIKTTDANNVDHTILISVTNPHS
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mRNA from alignment at Ecto-sp13_S_contig9003:1547..2180-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9003.20557.1 ID=mRNA_Ecto-sp13_S_contig9003.20557.1|Name=mRNA_Ecto-sp13_S_contig9003.20557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=634bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9003:1547..2180- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTAAACTTCCCCCAGGCTCGGGCCCTGGAGCGTGCGGTGAGAGAGAAGC TCAAACGAACGCCGCAGACCGTTGCTGCTCAAACATAGGAAACATAAGAA CGAGGTTCGAACAAGCTGCAACGCCGGGCTTTTGTCATGTTCCCAGCTTG ATTGATTTAAGCAATTCATCTAACGTTCAATCGAGTCCATCCGCTAGCTC TTGTGCGTTTCCCTCGGCGAACAATCACAGTGGTGGATGATAAACCATGC AAAGAATTGAACAACATGGCCGACCGATATCTCTACCTGTGCATGCCGTC GCTCGCGCTGCGGTACGCTATATATACAAGACCCGATGTAAAATATTACT CGACGGCCGTCGTCGTCGCTGTCCACCTTTTTCGCCCCCTGGCGCCACGA GCAGGCGATCCTCACATGACTGGGTTCAGAGGGCAAAGATTCGATTTCAC GGGGGAAGACGACGGCTGGTACGCGATCCTCTCAGACCTGCCCAACATCC ACCTCCACATGCGCGTAACCTCGCCTGTCCCGTCGGTGCCTGAAATCACC TACATCACCGGGATCTCCATCAAGACCACCGACGCTAACAACGTGGACCA CACTATCTTAATCTCGGTTACCAACCCGCACAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9003:1547..2180-

>mRNA_Ecto-sp13_S_contig9003.20557.1 ID=mRNA_Ecto-sp13_S_contig9003.20557.1|Name=mRNA_Ecto-sp13_S_contig9003.20557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9003:1547..2180- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTAAACTTCCCCCAGGCTCGGGCCCTGGAGCGTGCGGCGATCCTCACAT
GACTGGGTTCAGAGGGCAAAGATTCGATTTCACGGGGGAAGACGACGGCT
GGTACGCGATCCTCTCAGACCTGCCCAACATCCACCTCCACATGCGCGTA
ACCTCGCCTGTCCCGTCGGTGCCTGAAATCACCTACATCACCGGGATCTC
CATCAAGACCACCGACGCTAACAACGTGGACCACACTATCTTAATCTCGG
TTACCAACCCGCACAGC
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